RNA–Protein interactions for RNA: ENST00000570451.5

RPA1-202, Transcript of replication protein A1, humanhuman

TSL 3

Gene RPA1, Length 630 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPA1-202ENST00000570451 NISCHQ9Y2I1 1504 aa52.2■■■■■ 5.95
RPA1-202ENST00000570451 CCDC180Q9P1Z9 1646 aa46.7■■■■■ 5.07
RPA1-202ENST00000570451 ABCC9O60706 1549 aa46.54■■■■■ 5.04
RPA1-202ENST00000570451 RB1CC1Q8TDY2 1594 aa44.37■■■■■ 4.69
RPA1-202ENST00000570451 NACADO15069 1562 aa44.1■■■■■ 4.65
RPA1-202ENST00000570451 DCAF8L2P0C7V8 631 aa44.1■■■■■ 4.65
RPA1-202ENST00000570451 MYO15BQ96JP2 1530 aa43.53■■■■■ 4.56
RPA1-202ENST00000570451 PABPN1Q86U42 306 aaKnown RBP eCLIP43.4■■■■■ 4.54
RPA1-202ENST00000570451 DNAJC5BQ9UF47 199 aa43.38■■■■■ 4.53
RPA1-202ENST00000570451 UNC13AQ9UPW8 1703 aa43.34■■■■■ 4.53
RPA1-202ENST00000570451 ZCCHC6Q5VYS8 1495 aaKnown RBP43.32■■■■■ 4.52
RPA1-202ENST00000570451 DCAF1Q9Y4B6 1507 aa43.08■■■■■ 4.49
RPA1-202ENST00000570451 BICRAQ9NZM4 1560 aa43.03■■■■■ 4.48
RPA1-202ENST00000570451 SCRIBQ14160 1630 aa42.68■■■■■ 4.42
RPA1-202ENST00000570451 SHROOM4Q9ULL8 1493 aa42.46■■■■■ 4.39
RPA1-202ENST00000570451 CC2D2AQ9P2K1 1620 aa42.02■■■■■ 4.32
RPA1-202ENST00000570451 EIF4G1Q04637 1599 aaKnown RBP41.98■■■■■ 4.31
RPA1-202ENST00000570451 CECR2Q9BXF3 1484 aa41.88■■■■■ 4.29
RPA1-202ENST00000570451 NCAPD3P42695 1498 aa40.7■■■■■ 4.11
RPA1-202ENST00000570451 SMARCA4P51532 1647 aa40.67■■■■■ 4.1
RPA1-202ENST00000570451 ATAD2BQ9ULI0 1458 aa40.64■■■■■ 4.1
RPA1-202ENST00000570451 SMARCA2P51531 1590 aa40.56■■■■■ 4.08
RPA1-202ENST00000570451 BAZ1AQ9NRL2 1556 aaPredicted RBP40.52■■■■■ 4.08
RPA1-202ENST00000570451 HMGXB3Q12766 1538 aa40.44■■■■■ 4.06
RPA1-202ENST00000570451 BAZ1BQ9UIG0 1483 aaKnown RBP40.31■■■■■ 4.04
RPA1-202ENST00000570451 MROH2BQ7Z745 1585 aa40.25■■■■■ 4.03
RPA1-202ENST00000570451 PEG3Q9GZU2 1588 aa40.23■■■■■ 4.03
RPA1-202ENST00000570451 ERCC6Q03468 1493 aa40.2■■■■■ 4.03
RPA1-202ENST00000570451 NESP48681 1621 aa40.05■■■■■ 4
RPA1-202ENST00000570451 CUX2O14529 1486 aa39.95■■■■□ 3.99
RPA1-202ENST00000570451 WIZO95785 1651 aa39.79■■■■□ 3.96
RPA1-202ENST00000570451 LAMC3Q9Y6N6 1575 aa39.76■■■■□ 3.96
RPA1-202ENST00000570451 DNAJC5Q9H3Z4 198 aa39.63■■■■□ 3.93
RPA1-202ENST00000570451 PDS5BQ9NTI5 1447 aa39.56■■■■□ 3.92
RPA1-202ENST00000570451 THOC2Q8NI27 1593 aaKnown RBP39.55■■■■□ 3.92
RPA1-202ENST00000570451 KIF21AQ7Z4S6 1674 aa39.52■■■■□ 3.92
RPA1-202ENST00000570451 CADPSQ9ULU8 1353 aa39.51■■■■□ 3.92
RPA1-202ENST00000570451 RSF1Q96T23 1441 aaPredicted RBP39.5■■■■□ 3.91
RPA1-202ENST00000570451 TOP2AP11388 1531 aaKnown RBP39.3■■■■□ 3.88
RPA1-202ENST00000570451 MRC2Q9UBG0 1479 aa39.2■■■■□ 3.87
RPA1-202ENST00000570451 CEP164Q9UPV0 1460 aa39.11■■■■□ 3.85
RPA1-202ENST00000570451 CFTRP13569 1480 aa39.1■■■■□ 3.85
RPA1-202ENST00000570451 FANCD2Q9BXW9 1451 aa39.09■■■■□ 3.85
RPA1-202ENST00000570451 WDR62O43379 1518 aa39.07■■■■□ 3.84
RPA1-202ENST00000570451 CCDC88BA6NC98 1476 aa38.86■■■■□ 3.81
RPA1-202ENST00000570451 URB2Q14146 1524 aaKnown RBP38.73■■■■□ 3.79
RPA1-202ENST00000570451 PRDM2Q13029 1718 aa38.72■■■■□ 3.79
RPA1-202ENST00000570451 TOPBP1Q92547 1522 aa38.37■■■■□ 3.73
RPA1-202ENST00000570451 IFT140Q96RY7 1462 aa38.31■■■■□ 3.72
RPA1-202ENST00000570451 ABCC8Q09428 1581 aa38.27■■■■□ 3.72
RPA1-202ENST00000570451 DNMBPQ6XZF7 1577 aa38.25■■■■□ 3.71
RPA1-202ENST00000570451 ZNF608Q9ULD9 1512 aaPredicted RBP38.22■■■■□ 3.71
RPA1-202ENST00000570451 OSCARQ8IYS5 282 aa38.21■■■■□ 3.71
RPA1-202ENST00000570451 TRIM41Q8WV44 630 aa38.13■■■■□ 3.69
RPA1-202ENST00000570451 SUPT5HO00267 1087 aaKnown RBP38.08■■■■□ 3.69
RPA1-202ENST00000570451 EIF4G3O43432 1585 aaKnown RBP38.03■■■■□ 3.68
RPA1-202ENST00000570451 POLA1P09884 1462 aaPredicted RBP37.99■■■■□ 3.67
RPA1-202ENST00000570451 TARBP1Q13395 1621 aaKnown RBP37.98■■■■□ 3.67
RPA1-202ENST00000570451 AQRO60306 1485 aaKnown RBP eCLIP37.93■■■■□ 3.66
RPA1-202ENST00000570451 RAD54L2Q9Y4B4 1467 aa37.88■■■■□ 3.65
RPA1-202ENST00000570451 SOGA1O94964 1423 aa37.84■■■■□ 3.65
RPA1-202ENST00000570451 FGD5Q6ZNL6 1462 aa37.8■■■■□ 3.64
RPA1-202ENST00000570451 CUX1P39880 1505 aa37.8■■■■□ 3.64
RPA1-202ENST00000570451 TDRD9Q8NDG6 1382 aaKnown RBP37.76■■■■□ 3.64
RPA1-202ENST00000570451 FBLN2P98095 1184 aa37.72■■■■□ 3.63
RPA1-202ENST00000570451 CHD1O14646 1710 aa37.7■■■■□ 3.63
RPA1-202ENST00000570451 RIMBP3CA6NJZ7 1639 aa37.68■■■■□ 3.62
RPA1-202ENST00000570451 RIMBP3BA6NNM3 1639 aa37.68■■■■□ 3.62
RPA1-202ENST00000570451 RIMBP3Q9UFD9 1639 aa37.68■■■■□ 3.62
RPA1-202ENST00000570451 WDR97A6NE52 1622 aa37.59■■■■□ 3.61
RPA1-202ENST00000570451 ARHGEF11O15085 1522 aa37.58■■■■□ 3.61
RPA1-202ENST00000570451 SNAPC4Q5SXM2 1469 aa37.56■■■■□ 3.6
RPA1-202ENST00000570451 GRIN2BQ13224 1484 aa37.47■■■■□ 3.59
RPA1-202ENST00000570451 CHMP7Q8WUX9 453 aaPredicted RBP37.43■■■■□ 3.58
RPA1-202ENST00000570451 MAGI1Q96QZ7 1491 aaPredicted RBP37.43■■■■□ 3.58
RPA1-202ENST00000570451 GAPVD1Q14C86 1478 aa37.39■■■■□ 3.58
RPA1-202ENST00000570451 ABCA10Q8WWZ4 1543 aa37.36■■■■□ 3.57
RPA1-202ENST00000570451 PBRM1Q86U86 1689 aa37.34■■■■□ 3.57
RPA1-202ENST00000570451 CYB5RLQ6IPT4 315 aa37.34■■■■□ 3.57
RPA1-202ENST00000570451 SYNJ2O15056 1496 aa37.32■■■■□ 3.56
RPA1-202ENST00000570451 WRNQ14191 1432 aaPredicted RBP eCLIP37.3■■■■□ 3.56
RPA1-202ENST00000570451 SYNJ1O43426 1573 aa37.28■■■■□ 3.56
RPA1-202ENST00000570451 ABCA5Q8WWZ7 1642 aa37.28■■■■□ 3.56
RPA1-202ENST00000570451 TOP2BQ02880 1626 aa37.25■■■■□ 3.55
RPA1-202ENST00000570451 CLASP1Q7Z460 1538 aa37.24■■■■□ 3.55
RPA1-202ENST00000570451 BIVM-ERCC5R4GMW8 1640 aa37.24■■■■□ 3.55
RPA1-202ENST00000570451 ARAP1Q96P48 1450 aa37.23■■■■□ 3.55
RPA1-202ENST00000570451 ADAMTS12P58397 1594 aa37■■■■□ 3.51
RPA1-202ENST00000570451 GRIN2AQ12879 1464 aa36.99■■■■□ 3.51
RPA1-202ENST00000570451 FHAD1B1AJZ9 1412 aa36.91■■■■□ 3.5
RPA1-202ENST00000570451 ERICH3Q5RHP9 1530 aa36.9■■■■□ 3.5
RPA1-202ENST00000570451 TRHP20396 242 aaPredicted RBP36.89■■■■□ 3.5
RPA1-202ENST00000570451 CEP170Q5SW79 1584 aa36.85■■■■□ 3.49
RPA1-202ENST00000570451 NUP160Q12769 1436 aa36.82■■■■□ 3.48
RPA1-202ENST00000570451 ERCC6L2Q5T890 1561 aa36.71■■■■□ 3.47
RPA1-202ENST00000570451 SHROOM2Q13796 1616 aa36.62■■■■□ 3.45
RPA1-202ENST00000570451 KIF27Q86VH2 1401 aa36.57■■■■□ 3.44
RPA1-202ENST00000570451 PRG4Q92954 1404 aaPredicted RBP36.51■■■■□ 3.43
RPA1-202ENST00000570451 IGF1RP08069 1367 aa36.5■■■■□ 3.43
RPA1-202ENST00000570451 JPH4Q96JJ6 628 aa36.48■■■■□ 3.43
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms