RNA–Protein interactions for RNA: ENST00000570273.5

HERPUD1-219, Transcript of homocysteine inducible ER protein with ubiquitin like domain 1, humanhuman

TSL 1 (best)

Gene HERPUD1, Length 1,425 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD1-219ENST00000570273 NISCHQ9Y2I1 1504 aa36■■■■□ 3.35
HERPUD1-219ENST00000570273 CCDC180Q9P1Z9 1646 aa31.67■■■□□ 2.66
HERPUD1-219ENST00000570273 ABCC9O60706 1549 aa30.54■■■□□ 2.48
HERPUD1-219ENST00000570273 ZCCHC6Q5VYS8 1495 aaKnown RBP30.17■■■□□ 2.42
HERPUD1-219ENST00000570273 DCAF8L2P0C7V8 631 aa29.83■■■□□ 2.37
HERPUD1-219ENST00000570273 DCAF1Q9Y4B6 1507 aa29.8■■■□□ 2.36
HERPUD1-219ENST00000570273 MYO15BQ96JP2 1530 aa29.62■■■□□ 2.33
HERPUD1-219ENST00000570273 NACADO15069 1562 aa29.6■■■□□ 2.33
HERPUD1-219ENST00000570273 RB1CC1Q8TDY2 1594 aa29.5■■■□□ 2.31
HERPUD1-219ENST00000570273 SCRIBQ14160 1630 aa29.04■■■□□ 2.24
HERPUD1-219ENST00000570273 SHROOM4Q9ULL8 1493 aa29■■■□□ 2.23
HERPUD1-219ENST00000570273 UNC13AQ9UPW8 1703 aa28.93■■■□□ 2.22
HERPUD1-219ENST00000570273 BICRAQ9NZM4 1560 aa28.68■■■□□ 2.18
HERPUD1-219ENST00000570273 PABPN1Q86U42 306 aaKnown RBP eCLIP28.5■■■□□ 2.15
HERPUD1-219ENST00000570273 CECR2Q9BXF3 1484 aa27.98■■■□□ 2.07
HERPUD1-219ENST00000570273 DNAJC5BQ9UF47 199 aa27.93■■■□□ 2.06
HERPUD1-219ENST00000570273 BAZ1AQ9NRL2 1556 aaPredicted RBP27.86■■■□□ 2.05
HERPUD1-219ENST00000570273 EIF4G1Q04637 1599 aaKnown RBP27.86■■■□□ 2.05
HERPUD1-219ENST00000570273 SMARCA4P51532 1647 aa27.8■■■□□ 2.04
HERPUD1-219ENST00000570273 MROH2BQ7Z745 1585 aa27.78■■■□□ 2.04
HERPUD1-219ENST00000570273 RSF1Q96T23 1441 aaPredicted RBP27.72■■■□□ 2.03
HERPUD1-219ENST00000570273 CC2D2AQ9P2K1 1620 aa27.7■■■□□ 2.03
HERPUD1-219ENST00000570273 SUPT5HO00267 1087 aaKnown RBP27.63■■■□□ 2.01
HERPUD1-219ENST00000570273 WIZO95785 1651 aa27.52■■■□□ 2
HERPUD1-219ENST00000570273 PEG3Q9GZU2 1588 aa27.47■■□□□ 1.99
HERPUD1-219ENST00000570273 SMARCA2P51531 1590 aa27.46■■□□□ 1.99
HERPUD1-219ENST00000570273 ATAD2BQ9ULI0 1458 aa27.45■■□□□ 1.98
HERPUD1-219ENST00000570273 NCAPD3P42695 1498 aa27.29■■□□□ 1.96
HERPUD1-219ENST00000570273 BAZ1BQ9UIG0 1483 aaKnown RBP27.29■■□□□ 1.96
HERPUD1-219ENST00000570273 TOP2AP11388 1531 aaKnown RBP27.28■■□□□ 1.96
HERPUD1-219ENST00000570273 HMGXB3Q12766 1538 aa27.26■■□□□ 1.95
HERPUD1-219ENST00000570273 CCDC88BA6NC98 1476 aa26.94■■□□□ 1.9
HERPUD1-219ENST00000570273 CADPSQ9ULU8 1353 aa26.57■■□□□ 1.84
HERPUD1-219ENST00000570273 CFTRP13569 1480 aa26.56■■□□□ 1.84
HERPUD1-219ENST00000570273 LAMC3Q9Y6N6 1575 aa26.5■■□□□ 1.83
HERPUD1-219ENST00000570273 NESP48681 1621 aa26.5■■□□□ 1.83
HERPUD1-219ENST00000570273 PRDM2Q13029 1718 aa26.39■■□□□ 1.82
HERPUD1-219ENST00000570273 FANCD2Q9BXW9 1451 aa26.29■■□□□ 1.8
HERPUD1-219ENST00000570273 PDS5BQ9NTI5 1447 aa26.28■■□□□ 1.8
HERPUD1-219ENST00000570273 ERCC6Q03468 1493 aa26.27■■□□□ 1.8
HERPUD1-219ENST00000570273 KIF21AQ7Z4S6 1674 aa26.25■■□□□ 1.79
HERPUD1-219ENST00000570273 ABCC8Q09428 1581 aa26.21■■□□□ 1.79
HERPUD1-219ENST00000570273 CEP164Q9UPV0 1460 aa26.2■■□□□ 1.78
HERPUD1-219ENST00000570273 CHIC1Q5VXU3 224 aa26.18■■□□□ 1.78
HERPUD1-219ENST00000570273 THOC2Q8NI27 1593 aaKnown RBP26.15■■□□□ 1.78
HERPUD1-219ENST00000570273 WRNQ14191 1432 aaPredicted RBP eCLIP26.14■■□□□ 1.77
HERPUD1-219ENST00000570273 CUX2O14529 1486 aa26.05■■□□□ 1.76
HERPUD1-219ENST00000570273 SYNJ1O43426 1573 aa26.04■■□□□ 1.76
HERPUD1-219ENST00000570273 TRIM41Q8WV44 630 aa26.03■■□□□ 1.76
HERPUD1-219ENST00000570273 CUX1P39880 1505 aa26.03■■□□□ 1.76
HERPUD1-219ENST00000570273 MRC2Q9UBG0 1479 aa26■■□□□ 1.75
HERPUD1-219ENST00000570273 TOP2BQ02880 1626 aa25.98■■□□□ 1.75
HERPUD1-219ENST00000570273 DNMBPQ6XZF7 1577 aa25.98■■□□□ 1.75
HERPUD1-219ENST00000570273 URB2Q14146 1524 aaKnown RBP25.97■■□□□ 1.75
HERPUD1-219ENST00000570273 BIVM-ERCC5R4GMW8 1640 aa25.97■■□□□ 1.75
HERPUD1-219ENST00000570273 WDR62O43379 1518 aa25.97■■□□□ 1.75
HERPUD1-219ENST00000570273 TOPBP1Q92547 1522 aa25.94■■□□□ 1.74
HERPUD1-219ENST00000570273 FGD5Q6ZNL6 1462 aa25.83■■□□□ 1.73
HERPUD1-219ENST00000570273 POLA1P09884 1462 aaPredicted RBP25.78■■□□□ 1.72
HERPUD1-219ENST00000570273 SOGA1O94964 1423 aa25.67■■□□□ 1.7
HERPUD1-219ENST00000570273 RAD54L2Q9Y4B4 1467 aa25.66■■□□□ 1.7
HERPUD1-219ENST00000570273 IFT140Q96RY7 1462 aa25.59■■□□□ 1.69
HERPUD1-219ENST00000570273 ABCA10Q8WWZ4 1543 aa25.59■■□□□ 1.69
HERPUD1-219ENST00000570273 TARBP1Q13395 1621 aaKnown RBP25.58■■□□□ 1.69
HERPUD1-219ENST00000570273 WDR97A6NE52 1622 aa25.55■■□□□ 1.68
HERPUD1-219ENST00000570273 EEA1Q15075 1411 aa25.53■■□□□ 1.68
HERPUD1-219ENST00000570273 KIF27Q86VH2 1401 aa25.53■■□□□ 1.68
HERPUD1-219ENST00000570273 FAM9AQ8IZU1 332 aaPredicted RBP25.53■■□□□ 1.68
HERPUD1-219ENST00000570273 RUSC2Q8N2Y8 1516 aa25.52■■□□□ 1.68
HERPUD1-219ENST00000570273 TDRD9Q8NDG6 1382 aaKnown RBP25.45■■□□□ 1.66
HERPUD1-219ENST00000570273 ABCA5Q8WWZ7 1642 aa25.43■■□□□ 1.66
HERPUD1-219ENST00000570273 ZNF608Q9ULD9 1512 aaPredicted RBP25.43■■□□□ 1.66
HERPUD1-219ENST00000570273 GAPVD1Q14C86 1478 aa25.4■■□□□ 1.66
HERPUD1-219ENST00000570273 AQRO60306 1485 aaKnown RBP eCLIP25.38■■□□□ 1.654e-7■■■■■ 42.8
HERPUD1-219ENST00000570273 CSRNP3Q8WYN3 585 aa25.37■■□□□ 1.65
HERPUD1-219ENST00000570273 EIF4G3O43432 1585 aaKnown RBP25.37■■□□□ 1.65
HERPUD1-219ENST00000570273 GRIN2BQ13224 1484 aa25.3■■□□□ 1.64
HERPUD1-219ENST00000570273 IGF1RP08069 1367 aa25.3■■□□□ 1.64
HERPUD1-219ENST00000570273 ERICH3Q5RHP9 1530 aa25.29■■□□□ 1.64
HERPUD1-219ENST00000570273 PBRM1Q86U86 1689 aa25.29■■□□□ 1.64
HERPUD1-219ENST00000570273 CUL7Q14999 1698 aa25.22■■□□□ 1.63
HERPUD1-219ENST00000570273 PRXQ9BXM0 1461 aa25.21■■□□□ 1.63
HERPUD1-219ENST00000570273 KIF21BO75037 1637 aa25.21■■□□□ 1.63
HERPUD1-219ENST00000570273 CARMIL1Q5VZK9 1371 aa25.2■■□□□ 1.62
HERPUD1-219ENST00000570273 SNAPC4Q5SXM2 1469 aa25.18■■□□□ 1.62
HERPUD1-219ENST00000570273 EHMT2Q96KQ7 1210 aa25.17■■□□□ 1.62
HERPUD1-219ENST00000570273 ADAMTS12P58397 1594 aa25.16■■□□□ 1.62
HERPUD1-219ENST00000570273 GOLGA3Q08378 1498 aa25.15■■□□□ 1.62
HERPUD1-219ENST00000570273 MAGI1Q96QZ7 1491 aaPredicted RBP25.14■■□□□ 1.61
HERPUD1-219ENST00000570273 RAPGEF2Q9Y4G8 1499 aa25.14■■□□□ 1.61
HERPUD1-219ENST00000570273 FHAD1B1AJZ9 1412 aa25.13■■□□□ 1.61
HERPUD1-219ENST00000570273 LOC105371045A0A1W2PR82 267 aa25.12■■□□□ 1.61
HERPUD1-219ENST00000570273 DNAJC5Q9H3Z4 198 aa25.04■■□□□ 1.6
HERPUD1-219ENST00000570273 SYNJ2O15056 1496 aa25.04■■□□□ 1.6
HERPUD1-219ENST00000570273 UBTFP17480 764 aaKnown RBP25.01■■□□□ 1.59
HERPUD1-219ENST00000570273 CHD1O14646 1710 aa24.98■■□□□ 1.59
HERPUD1-219ENST00000570273 GRIN2AQ12879 1464 aa24.97■■□□□ 1.59
HERPUD1-219ENST00000570273 CHMP7Q8WUX9 453 aaPredicted RBP24.97■■□□□ 1.59
HERPUD1-219ENST00000570273 FBLN2P98095 1184 aa24.95■■□□□ 1.59
HERPUD1-219ENST00000570273 TNIKQ9UKE5 1360 aa24.94■■□□□ 1.58
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms