RNA–Protein interactions for RNA: ENST00000569827.5

CAPN3-220, Transcript of calpain 3, humanhuman

TSL 5

Gene CAPN3, Length 908 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-220ENST00000569827 NISCHQ9Y2I1 1504 aa30.63■■■□□ 2.49
CAPN3-220ENST00000569827 ABCC9O60706 1549 aa27.8■■■□□ 2.04
CAPN3-220ENST00000569827 CCDC180Q9P1Z9 1646 aa27.61■■■□□ 2.01
CAPN3-220ENST00000569827 RB1CC1Q8TDY2 1594 aa26.31■■□□□ 1.8
CAPN3-220ENST00000569827 DNAJC5BQ9UF47 199 aa26.18■■□□□ 1.78
CAPN3-220ENST00000569827 NACADO15069 1562 aa26.05■■□□□ 1.76
CAPN3-220ENST00000569827 UNC13AQ9UPW8 1703 aa25.97■■□□□ 1.75
CAPN3-220ENST00000569827 DCAF8L2P0C7V8 631 aa25.96■■□□□ 1.75
CAPN3-220ENST00000569827 PABPN1Q86U42 306 aaKnown RBP eCLIP25.83■■□□□ 1.73
CAPN3-220ENST00000569827 BICRAQ9NZM4 1560 aa25.63■■□□□ 1.69
CAPN3-220ENST00000569827 MYO15BQ96JP2 1530 aa25.53■■□□□ 1.68
CAPN3-220ENST00000569827 ZCCHC6Q5VYS8 1495 aaKnown RBP25.37■■□□□ 1.65
CAPN3-220ENST00000569827 SCRIBQ14160 1630 aa25.26■■□□□ 1.63
CAPN3-220ENST00000569827 DCAF1Q9Y4B6 1507 aa25.2■■□□□ 1.62
CAPN3-220ENST00000569827 CC2D2AQ9P2K1 1620 aa25.12■■□□□ 1.61
CAPN3-220ENST00000569827 SHROOM4Q9ULL8 1493 aa25.04■■□□□ 1.6
CAPN3-220ENST00000569827 CECR2Q9BXF3 1484 aa24.99■■□□□ 1.59
CAPN3-220ENST00000569827 EIF4G1Q04637 1599 aaKnown RBP24.98■■□□□ 1.59
CAPN3-220ENST00000569827 DNAJC5Q9H3Z4 198 aa24.02■■□□□ 1.44
CAPN3-220ENST00000569827 SMARCA4P51532 1647 aa24.01■■□□□ 1.43
CAPN3-220ENST00000569827 NCAPD3P42695 1498 aa24■■□□□ 1.43
CAPN3-220ENST00000569827 ATAD2BQ9ULI0 1458 aa23.99■■□□□ 1.43
CAPN3-220ENST00000569827 ERCC6Q03468 1493 aa23.95■■□□□ 1.42
CAPN3-220ENST00000569827 SMARCA2P51531 1590 aa23.9■■□□□ 1.42
CAPN3-220ENST00000569827 CUX2O14529 1486 aa23.88■■□□□ 1.41
CAPN3-220ENST00000569827 HMGXB3Q12766 1538 aa23.88■■□□□ 1.41
CAPN3-220ENST00000569827 NESP48681 1621 aa23.87■■□□□ 1.41
CAPN3-220ENST00000569827 BAZ1AQ9NRL2 1556 aaPredicted RBP23.77■■□□□ 1.4
CAPN3-220ENST00000569827 BAZ1BQ9UIG0 1483 aaKnown RBP23.76■■□□□ 1.39
CAPN3-220ENST00000569827 PEG3Q9GZU2 1588 aa23.68■■□□□ 1.38
CAPN3-220ENST00000569827 MROH2BQ7Z745 1585 aa23.67■■□□□ 1.38
CAPN3-220ENST00000569827 THOC2Q8NI27 1593 aaKnown RBP23.65■■□□□ 1.38
CAPN3-220ENST00000569827 KIF21AQ7Z4S6 1674 aa23.65■■□□□ 1.38
CAPN3-220ENST00000569827 LAMC3Q9Y6N6 1575 aa23.57■■□□□ 1.36
CAPN3-220ENST00000569827 WIZO95785 1651 aa23.47■■□□□ 1.35
CAPN3-220ENST00000569827 PDS5BQ9NTI5 1447 aa23.35■■□□□ 1.33
CAPN3-220ENST00000569827 CADPSQ9ULU8 1353 aa23.27■■□□□ 1.32
CAPN3-220ENST00000569827 MRC2Q9UBG0 1479 aa23.24■■□□□ 1.31
CAPN3-220ENST00000569827 WDR62O43379 1518 aa23.22■■□□□ 1.31
CAPN3-220ENST00000569827 CEP164Q9UPV0 1460 aa23.13■■□□□ 1.29
CAPN3-220ENST00000569827 FANCD2Q9BXW9 1451 aa23.1■■□□□ 1.29
CAPN3-220ENST00000569827 TRIM41Q8WV44 630 aa23.06■■□□□ 1.28
CAPN3-220ENST00000569827 RSF1Q96T23 1441 aaPredicted RBP23.05■■□□□ 1.28
CAPN3-220ENST00000569827 TOP2AP11388 1531 aaKnown RBP23.04■■□□□ 1.28
CAPN3-220ENST00000569827 CFTRP13569 1480 aa23■■□□□ 1.27
CAPN3-220ENST00000569827 PRDM2Q13029 1718 aa22.99■■□□□ 1.27
CAPN3-220ENST00000569827 URB2Q14146 1524 aaKnown RBP22.96■■□□□ 1.27
CAPN3-220ENST00000569827 CCDC88BA6NC98 1476 aa22.78■■□□□ 1.24
CAPN3-220ENST00000569827 OSCARQ8IYS5 282 aa22.72■■□□□ 1.23
CAPN3-220ENST00000569827 ZNF608Q9ULD9 1512 aaPredicted RBP22.72■■□□□ 1.23
CAPN3-220ENST00000569827 TOPBP1Q92547 1522 aa22.66■■□□□ 1.22
CAPN3-220ENST00000569827 RIMBP3CA6NJZ7 1639 aa22.65■■□□□ 1.22
CAPN3-220ENST00000569827 RIMBP3BA6NNM3 1639 aa22.65■■□□□ 1.22
CAPN3-220ENST00000569827 RIMBP3Q9UFD9 1639 aa22.65■■□□□ 1.22
CAPN3-220ENST00000569827 EIF4G3O43432 1585 aaKnown RBP22.63■■□□□ 1.21
CAPN3-220ENST00000569827 IFT140Q96RY7 1462 aa22.62■■□□□ 1.21
CAPN3-220ENST00000569827 CHD1O14646 1710 aa22.57■■□□□ 1.2
CAPN3-220ENST00000569827 DNMBPQ6XZF7 1577 aa22.57■■□□□ 1.2
CAPN3-220ENST00000569827 TARBP1Q13395 1621 aaKnown RBP22.51■■□□□ 1.19
CAPN3-220ENST00000569827 ARHGEF11O15085 1522 aa22.5■■□□□ 1.19
CAPN3-220ENST00000569827 AQRO60306 1485 aaKnown RBP eCLIP22.47■■□□□ 1.19
CAPN3-220ENST00000569827 ABCC8Q09428 1581 aa22.46■■□□□ 1.19
CAPN3-220ENST00000569827 POLA1P09884 1462 aaPredicted RBP22.41■■□□□ 1.18
CAPN3-220ENST00000569827 RAD54L2Q9Y4B4 1467 aa22.39■■□□□ 1.17
CAPN3-220ENST00000569827 FBLN2P98095 1184 aa22.33■■□□□ 1.17
CAPN3-220ENST00000569827 CYB5RLQ6IPT4 315 aa22.3■■□□□ 1.16
CAPN3-220ENST00000569827 FGD5Q6ZNL6 1462 aa22.28■■□□□ 1.16
CAPN3-220ENST00000569827 ARAP1Q96P48 1450 aa22.28■■□□□ 1.16
CAPN3-220ENST00000569827 TDRD9Q8NDG6 1382 aaKnown RBP22.27■■□□□ 1.16
CAPN3-220ENST00000569827 SOGA1O94964 1423 aa22.26■■□□□ 1.15
CAPN3-220ENST00000569827 CUX1P39880 1505 aa22.26■■□□□ 1.15
CAPN3-220ENST00000569827 SNAPC4Q5SXM2 1469 aa22.24■■□□□ 1.15
CAPN3-220ENST00000569827 WDR97A6NE52 1622 aa22.21■■□□□ 1.15
CAPN3-220ENST00000569827 PBRM1Q86U86 1689 aa22.19■■□□□ 1.14
CAPN3-220ENST00000569827 CLASP1Q7Z460 1538 aa22.16■■□□□ 1.14
CAPN3-220ENST00000569827 TRHP20396 242 aaPredicted RBP22.11■■□□□ 1.13
CAPN3-220ENST00000569827 SYNJ1O43426 1573 aa22.11■■□□□ 1.13
CAPN3-220ENST00000569827 MAGI1Q96QZ7 1491 aaPredicted RBP22.09■■□□□ 1.13
CAPN3-220ENST00000569827 GRIN2BQ13224 1484 aa22.08■■□□□ 1.12
CAPN3-220ENST00000569827 CHMP7Q8WUX9 453 aaPredicted RBP22.06■■□□□ 1.12
CAPN3-220ENST00000569827 SYNJ2O15056 1496 aa22.03■■□□□ 1.12
CAPN3-220ENST00000569827 ABCA5Q8WWZ7 1642 aa22.02■■□□□ 1.12
CAPN3-220ENST00000569827 GAPVD1Q14C86 1478 aa22.01■■□□□ 1.11
CAPN3-220ENST00000569827 SUPT5HO00267 1087 aaKnown RBP21.99■■□□□ 1.11
CAPN3-220ENST00000569827 ABCA10Q8WWZ4 1543 aa21.95■■□□□ 1.1
CAPN3-220ENST00000569827 ERCC6L2Q5T890 1561 aa21.91■■□□□ 1.1
CAPN3-220ENST00000569827 BIVM-ERCC5R4GMW8 1640 aa21.88■■□□□ 1.09
CAPN3-220ENST00000569827 ADAMTS12P58397 1594 aa21.87■■□□□ 1.09
CAPN3-220ENST00000569827 CEP170Q5SW79 1584 aa21.85■■□□□ 1.09
CAPN3-220ENST00000569827 GRIN2AQ12879 1464 aa21.83■■□□□ 1.09
CAPN3-220ENST00000569827 TOP2BQ02880 1626 aa21.83■■□□□ 1.08
CAPN3-220ENST00000569827 WRNQ14191 1432 aaPredicted RBP eCLIP21.79■■□□□ 1.08
CAPN3-220ENST00000569827 SHROOM2Q13796 1616 aa21.73■■□□□ 1.07
CAPN3-220ENST00000569827 NUP160Q12769 1436 aa21.72■■□□□ 1.07
CAPN3-220ENST00000569827 FHAD1B1AJZ9 1412 aa21.67■■□□□ 1.06
CAPN3-220ENST00000569827 ERICH3Q5RHP9 1530 aa21.66■■□□□ 1.06
CAPN3-220ENST00000569827 KIF13AQ9H1H9 1805 aa21.65■■□□□ 1.06
CAPN3-220ENST00000569827 RUSC2Q8N2Y8 1516 aa21.58■■□□□ 1.04
CAPN3-220ENST00000569827 PRG4Q92954 1404 aaPredicted RBP21.56■■□□□ 1.04
CAPN3-220ENST00000569827 AEBP2Q6ZN18 517 aaPredicted RBP21.54■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms