RNA–Protein interactions for RNA: ENST00000569720.1

SPG7-221, Transcript of SPG7, paraplegin matrix AAA peptidase subunit, humanhuman

TSL 2

Gene SPG7, Length 909 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG7-221ENST00000569720 NISCHQ9Y2I1 1504 aa32.73■■■□□ 2.83
SPG7-221ENST00000569720 CCDC180Q9P1Z9 1646 aa29.41■■■□□ 2.3
SPG7-221ENST00000569720 ABCC9O60706 1549 aa29.29■■■□□ 2.28
SPG7-221ENST00000569720 RB1CC1Q8TDY2 1594 aa27.96■■■□□ 2.07
SPG7-221ENST00000569720 NACADO15069 1562 aa27.77■■■□□ 2.04
SPG7-221ENST00000569720 DCAF8L2P0C7V8 631 aa27.63■■■□□ 2.01
SPG7-221ENST00000569720 MYO15BQ96JP2 1530 aa27.39■■□□□ 1.98
SPG7-221ENST00000569720 DNAJC5BQ9UF47 199 aa27.36■■□□□ 1.97
SPG7-221ENST00000569720 UNC13AQ9UPW8 1703 aa27.33■■□□□ 1.96
SPG7-221ENST00000569720 PABPN1Q86U42 306 aaKnown RBP eCLIP27.26■■□□□ 1.955e-7■■■□□ 17.4
SPG7-221ENST00000569720 ZCCHC6Q5VYS8 1495 aaKnown RBP27.13■■□□□ 1.93
SPG7-221ENST00000569720 BICRAQ9NZM4 1560 aa27.08■■□□□ 1.93
SPG7-221ENST00000569720 DCAF1Q9Y4B6 1507 aa27.06■■□□□ 1.92
SPG7-221ENST00000569720 SHROOM4Q9ULL8 1493 aa26.79■■□□□ 1.88
SPG7-221ENST00000569720 SCRIBQ14160 1630 aa26.76■■□□□ 1.87
SPG7-221ENST00000569720 CC2D2AQ9P2K1 1620 aa26.48■■□□□ 1.83
SPG7-221ENST00000569720 EIF4G1Q04637 1599 aaKnown RBP26.44■■□□□ 1.82
SPG7-221ENST00000569720 CECR2Q9BXF3 1484 aa26.39■■□□□ 1.82
SPG7-221ENST00000569720 NCAPD3P42695 1498 aa25.6■■□□□ 1.69
SPG7-221ENST00000569720 SMARCA4P51532 1647 aa25.54■■□□□ 1.68
SPG7-221ENST00000569720 ATAD2BQ9ULI0 1458 aa25.52■■□□□ 1.68
SPG7-221ENST00000569720 SMARCA2P51531 1590 aa25.51■■□□□ 1.67
SPG7-221ENST00000569720 HMGXB3Q12766 1538 aa25.44■■□□□ 1.66
SPG7-221ENST00000569720 BAZ1AQ9NRL2 1556 aaPredicted RBP25.44■■□□□ 1.66
SPG7-221ENST00000569720 ERCC6Q03468 1493 aa25.34■■□□□ 1.65
SPG7-221ENST00000569720 BAZ1BQ9UIG0 1483 aaKnown RBP25.32■■□□□ 1.64
SPG7-221ENST00000569720 PEG3Q9GZU2 1588 aa25.28■■□□□ 1.64
SPG7-221ENST00000569720 CUX2O14529 1486 aa25.26■■□□□ 1.63
SPG7-221ENST00000569720 MROH2BQ7Z745 1585 aa25.19■■□□□ 1.62
SPG7-221ENST00000569720 NESP48681 1621 aa25.15■■□□□ 1.62
SPG7-221ENST00000569720 DNAJC5Q9H3Z4 198 aa25.15■■□□□ 1.62
SPG7-221ENST00000569720 LAMC3Q9Y6N6 1575 aa25.06■■□□□ 1.6
SPG7-221ENST00000569720 THOC2Q8NI27 1593 aaKnown RBP24.93■■□□□ 1.58
SPG7-221ENST00000569720 WIZO95785 1651 aa24.92■■□□□ 1.58
SPG7-221ENST00000569720 PDS5BQ9NTI5 1447 aa24.91■■□□□ 1.58
SPG7-221ENST00000569720 KIF21AQ7Z4S6 1674 aa24.9■■□□□ 1.58
SPG7-221ENST00000569720 CADPSQ9ULU8 1353 aa24.83■■□□□ 1.57
SPG7-221ENST00000569720 RSF1Q96T23 1441 aaPredicted RBP24.69■■□□□ 1.54
SPG7-221ENST00000569720 MRC2Q9UBG0 1479 aa24.67■■□□□ 1.54
SPG7-221ENST00000569720 TOP2AP11388 1531 aaKnown RBP24.62■■□□□ 1.53
SPG7-221ENST00000569720 WDR62O43379 1518 aa24.6■■□□□ 1.53
SPG7-221ENST00000569720 CEP164Q9UPV0 1460 aa24.59■■□□□ 1.53
SPG7-221ENST00000569720 CFTRP13569 1480 aa24.55■■□□□ 1.52
SPG7-221ENST00000569720 FANCD2Q9BXW9 1451 aa24.55■■□□□ 1.52
SPG7-221ENST00000569720 PRDM2Q13029 1718 aa24.41■■□□□ 1.5
SPG7-221ENST00000569720 URB2Q14146 1524 aaKnown RBP24.33■■□□□ 1.49
SPG7-221ENST00000569720 CCDC88BA6NC98 1476 aa24.32■■□□□ 1.48
SPG7-221ENST00000569720 OSCARQ8IYS5 282 aa24.12■■□□□ 1.45
SPG7-221ENST00000569720 IFT140Q96RY7 1462 aa24.1■■□□□ 1.45
SPG7-221ENST00000569720 ABCC8Q09428 1581 aa24.1■■□□□ 1.45
SPG7-221ENST00000569720 TRIM41Q8WV44 630 aa24.09■■□□□ 1.45
SPG7-221ENST00000569720 TOPBP1Q92547 1522 aa24.09■■□□□ 1.45
SPG7-221ENST00000569720 DNMBPQ6XZF7 1577 aa24.03■■□□□ 1.44
SPG7-221ENST00000569720 ZNF608Q9ULD9 1512 aaPredicted RBP24■■□□□ 1.43
SPG7-221ENST00000569720 EIF4G3O43432 1585 aaKnown RBP23.92■■□□□ 1.42
SPG7-221ENST00000569720 TARBP1Q13395 1621 aaKnown RBP23.88■■□□□ 1.41
SPG7-221ENST00000569720 POLA1P09884 1462 aaPredicted RBP23.84■■□□□ 1.41
SPG7-221ENST00000569720 AQRO60306 1485 aaKnown RBP eCLIP23.81■■□□□ 1.48e-9■■■□□ 19.2
SPG7-221ENST00000569720 RIMBP3CA6NJZ7 1639 aa23.79■■□□□ 1.4
SPG7-221ENST00000569720 RIMBP3BA6NNM3 1639 aa23.79■■□□□ 1.4
SPG7-221ENST00000569720 RIMBP3Q9UFD9 1639 aa23.79■■□□□ 1.4
SPG7-221ENST00000569720 CHD1O14646 1710 aa23.76■■□□□ 1.39
SPG7-221ENST00000569720 SOGA1O94964 1423 aa23.75■■□□□ 1.39
SPG7-221ENST00000569720 RAD54L2Q9Y4B4 1467 aa23.74■■□□□ 1.39
SPG7-221ENST00000569720 ARHGEF11O15085 1522 aa23.7■■□□□ 1.38
SPG7-221ENST00000569720 FGD5Q6ZNL6 1462 aa23.7■■□□□ 1.38
SPG7-221ENST00000569720 WDR97A6NE52 1622 aa23.7■■□□□ 1.38
SPG7-221ENST00000569720 FBLN2P98095 1184 aa23.69■■□□□ 1.38
SPG7-221ENST00000569720 CUX1P39880 1505 aa23.68■■□□□ 1.38
SPG7-221ENST00000569720 TDRD9Q8NDG6 1382 aaKnown RBP23.67■■□□□ 1.38
SPG7-221ENST00000569720 SUPT5HO00267 1087 aaKnown RBP23.67■■□□□ 1.38
SPG7-221ENST00000569720 SNAPC4Q5SXM2 1469 aa23.58■■□□□ 1.37
SPG7-221ENST00000569720 GRIN2BQ13224 1484 aa23.55■■□□□ 1.36
SPG7-221ENST00000569720 MAGI1Q96QZ7 1491 aaPredicted RBP23.55■■□□□ 1.36
SPG7-221ENST00000569720 CYB5RLQ6IPT4 315 aa23.53■■□□□ 1.36
SPG7-221ENST00000569720 CHMP7Q8WUX9 453 aaPredicted RBP23.53■■□□□ 1.36
SPG7-221ENST00000569720 SYNJ1O43426 1573 aa23.49■■□□□ 1.35
SPG7-221ENST00000569720 PBRM1Q86U86 1689 aa23.49■■□□□ 1.35
SPG7-221ENST00000569720 GAPVD1Q14C86 1478 aa23.47■■□□□ 1.35
SPG7-221ENST00000569720 SYNJ2O15056 1496 aa23.46■■□□□ 1.35
SPG7-221ENST00000569720 ARAP1Q96P48 1450 aa23.46■■□□□ 1.35
SPG7-221ENST00000569720 CLASP1Q7Z460 1538 aa23.44■■□□□ 1.34
SPG7-221ENST00000569720 ABCA10Q8WWZ4 1543 aa23.44■■□□□ 1.34
SPG7-221ENST00000569720 ABCA5Q8WWZ7 1642 aa23.41■■□□□ 1.34
SPG7-221ENST00000569720 WRNQ14191 1432 aaPredicted RBP eCLIP23.38■■□□□ 1.33
SPG7-221ENST00000569720 BIVM-ERCC5R4GMW8 1640 aa23.36■■□□□ 1.33
SPG7-221ENST00000569720 TOP2BQ02880 1626 aa23.35■■□□□ 1.33
SPG7-221ENST00000569720 TRHP20396 242 aaPredicted RBP23.29■■□□□ 1.32
SPG7-221ENST00000569720 GRIN2AQ12879 1464 aa23.24■■□□□ 1.31
SPG7-221ENST00000569720 ADAMTS12P58397 1594 aa23.23■■□□□ 1.31
SPG7-221ENST00000569720 ERICH3Q5RHP9 1530 aa23.18■■□□□ 1.3
SPG7-221ENST00000569720 FHAD1B1AJZ9 1412 aa23.17■■□□□ 1.3
SPG7-221ENST00000569720 NUP160Q12769 1436 aa23.14■■□□□ 1.29
SPG7-221ENST00000569720 CEP170Q5SW79 1584 aa23.14■■□□□ 1.29
SPG7-221ENST00000569720 ERCC6L2Q5T890 1561 aa23.06■■□□□ 1.28
SPG7-221ENST00000569720 SHROOM2Q13796 1616 aa23.05■■□□□ 1.28
SPG7-221ENST00000569720 PRG4Q92954 1404 aaPredicted RBP22.93■■□□□ 1.26
SPG7-221ENST00000569720 JPH4Q96JJ6 628 aa22.92■■□□□ 1.26
SPG7-221ENST00000569720 KIF27Q86VH2 1401 aa22.91■■□□□ 1.26
SPG7-221ENST00000569720 RUSC2Q8N2Y8 1516 aa22.9■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms