RNA–Protein interactions for RNA: ENST00000569606.1

EDC3-217, Transcript of enhancer of mRNA decapping 3, humanhuman

TSL 2

Gene EDC3, Length 533 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EDC3-217ENST00000569606 NISCHQ9Y2I1 1504 aa29.45■■■□□ 2.31
EDC3-217ENST00000569606 CCDC180Q9P1Z9 1646 aa25.97■■□□□ 1.75
EDC3-217ENST00000569606 ABCC9O60706 1549 aa24.86■■□□□ 1.57
EDC3-217ENST00000569606 ZCCHC6Q5VYS8 1495 aaKnown RBP24.66■■□□□ 1.54
EDC3-217ENST00000569606 DCAF1Q9Y4B6 1507 aa24.4■■□□□ 1.5
EDC3-217ENST00000569606 DCAF8L2P0C7V8 631 aa24.33■■□□□ 1.49
EDC3-217ENST00000569606 MYO15BQ96JP2 1530 aa24.29■■□□□ 1.48
EDC3-217ENST00000569606 NACADO15069 1562 aa24.25■■□□□ 1.47
EDC3-217ENST00000569606 RB1CC1Q8TDY2 1594 aa24.16■■□□□ 1.46
EDC3-217ENST00000569606 SCRIBQ14160 1630 aa23.74■■□□□ 1.39
EDC3-217ENST00000569606 UNC13AQ9UPW8 1703 aa23.69■■□□□ 1.38
EDC3-217ENST00000569606 SHROOM4Q9ULL8 1493 aa23.59■■□□□ 1.37
EDC3-217ENST00000569606 BICRAQ9NZM4 1560 aa23.44■■□□□ 1.34
EDC3-217ENST00000569606 PABPN1Q86U42 306 aaKnown RBP eCLIP23.3■■□□□ 1.32
EDC3-217ENST00000569606 CECR2Q9BXF3 1484 aa22.9■■□□□ 1.26
EDC3-217ENST00000569606 BAZ1AQ9NRL2 1556 aaPredicted RBP22.79■■□□□ 1.24
EDC3-217ENST00000569606 EIF4G1Q04637 1599 aaKnown RBP22.76■■□□□ 1.23
EDC3-217ENST00000569606 SMARCA4P51532 1647 aa22.75■■□□□ 1.23
EDC3-217ENST00000569606 MROH2BQ7Z745 1585 aa22.72■■□□□ 1.23
EDC3-217ENST00000569606 RSF1Q96T23 1441 aaPredicted RBP22.64■■□□□ 1.21
EDC3-217ENST00000569606 CC2D2AQ9P2K1 1620 aa22.53■■□□□ 1.2
EDC3-217ENST00000569606 PEG3Q9GZU2 1588 aa22.53■■□□□ 1.2
EDC3-217ENST00000569606 WIZO95785 1651 aa22.52■■□□□ 1.2
EDC3-217ENST00000569606 ATAD2BQ9ULI0 1458 aa22.47■■□□□ 1.19
EDC3-217ENST00000569606 SMARCA2P51531 1590 aa22.46■■□□□ 1.19
EDC3-217ENST00000569606 SUPT5HO00267 1087 aaKnown RBP22.44■■□□□ 1.18
EDC3-217ENST00000569606 NCAPD3P42695 1498 aa22.37■■□□□ 1.17
EDC3-217ENST00000569606 HMGXB3Q12766 1538 aa22.32■■□□□ 1.16
EDC3-217ENST00000569606 DNAJC5BQ9UF47 199 aa22.32■■□□□ 1.16
EDC3-217ENST00000569606 BAZ1BQ9UIG0 1483 aaKnown RBP22.31■■□□□ 1.16
EDC3-217ENST00000569606 TOP2AP11388 1531 aaKnown RBP22.3■■□□□ 1.16
EDC3-217ENST00000569606 CCDC88BA6NC98 1476 aa22.03■■□□□ 1.12
EDC3-217ENST00000569606 CADPSQ9ULU8 1353 aa21.74■■□□□ 1.07
EDC3-217ENST00000569606 CFTRP13569 1480 aa21.73■■□□□ 1.07
EDC3-217ENST00000569606 LAMC3Q9Y6N6 1575 aa21.71■■□□□ 1.07
EDC3-217ENST00000569606 NESP48681 1621 aa21.69■■□□□ 1.06
EDC3-217ENST00000569606 PRDM2Q13029 1718 aa21.69■■□□□ 1.06
EDC3-217ENST00000569606 PDS5BQ9NTI5 1447 aa21.51■■□□□ 1.03
EDC3-217ENST00000569606 FANCD2Q9BXW9 1451 aa21.5■■□□□ 1.03
EDC3-217ENST00000569606 KIF21AQ7Z4S6 1674 aa21.49■■□□□ 1.03
EDC3-217ENST00000569606 CEP164Q9UPV0 1460 aa21.42■■□□□ 1.02
EDC3-217ENST00000569606 ABCC8Q09428 1581 aa21.41■■□□□ 1.02
EDC3-217ENST00000569606 ERCC6Q03468 1493 aa21.36■■□□□ 1.01
EDC3-217ENST00000569606 WRNQ14191 1432 aaPredicted RBP eCLIP21.32■■□□□ 1
EDC3-217ENST00000569606 CHIC1Q5VXU3 224 aa21.29■■□□□ 1
EDC3-217ENST00000569606 SYNJ1O43426 1573 aa21.28■■□□□ 1
EDC3-217ENST00000569606 MRC2Q9UBG0 1479 aa21.28■■□□□ 1
EDC3-217ENST00000569606 CUX1P39880 1505 aa21.28■■□□□ 1
EDC3-217ENST00000569606 URB2Q14146 1524 aaKnown RBP21.27■■□□□ 1
EDC3-217ENST00000569606 THOC2Q8NI27 1593 aaKnown RBP21.27■□□□□ 0.99
EDC3-217ENST00000569606 DNMBPQ6XZF7 1577 aa21.26■□□□□ 0.99
EDC3-217ENST00000569606 BIVM-ERCC5R4GMW8 1640 aa21.26■□□□□ 0.99
EDC3-217ENST00000569606 TOP2BQ02880 1626 aa21.25■□□□□ 0.99
EDC3-217ENST00000569606 TOPBP1Q92547 1522 aa21.23■□□□□ 0.99
EDC3-217ENST00000569606 WDR62O43379 1518 aa21.2■□□□□ 0.98
EDC3-217ENST00000569606 TRIM41Q8WV44 630 aa21.16■□□□□ 0.98
EDC3-217ENST00000569606 FGD5Q6ZNL6 1462 aa21.12■□□□□ 0.97
EDC3-217ENST00000569606 POLA1P09884 1462 aaPredicted RBP21.08■□□□□ 0.97
EDC3-217ENST00000569606 CUX2O14529 1486 aa21.01■□□□□ 0.95
EDC3-217ENST00000569606 SOGA1O94964 1423 aa20.99■□□□□ 0.95
EDC3-217ENST00000569606 RAD54L2Q9Y4B4 1467 aa20.99■□□□□ 0.95
EDC3-217ENST00000569606 TARBP1Q13395 1621 aaKnown RBP20.98■□□□□ 0.95
EDC3-217ENST00000569606 WDR97A6NE52 1622 aa20.96■□□□□ 0.95
EDC3-217ENST00000569606 IFT140Q96RY7 1462 aa20.94■□□□□ 0.94
EDC3-217ENST00000569606 ABCA10Q8WWZ4 1543 aa20.94■□□□□ 0.94
EDC3-217ENST00000569606 RUSC2Q8N2Y8 1516 aa20.84■□□□□ 0.93
EDC3-217ENST00000569606 ABCA5Q8WWZ7 1642 aa20.82■□□□□ 0.92
EDC3-217ENST00000569606 KIF27Q86VH2 1401 aa20.82■□□□□ 0.92
EDC3-217ENST00000569606 ZNF608Q9ULD9 1512 aaPredicted RBP20.82■□□□□ 0.92
EDC3-217ENST00000569606 TDRD9Q8NDG6 1382 aaKnown RBP20.8■□□□□ 0.92
EDC3-217ENST00000569606 EEA1Q15075 1411 aa20.79■□□□□ 0.92
EDC3-217ENST00000569606 EIF4G3O43432 1585 aaKnown RBP20.79■□□□□ 0.92
EDC3-217ENST00000569606 AQRO60306 1485 aaKnown RBP eCLIP20.76■□□□□ 0.915e-8■■■■□ 24.7
EDC3-217ENST00000569606 GAPVD1Q14C86 1478 aa20.76■□□□□ 0.91
EDC3-217ENST00000569606 PBRM1Q86U86 1689 aa20.74■□□□□ 0.91
EDC3-217ENST00000569606 FAM9AQ8IZU1 332 aaPredicted RBP20.73■□□□□ 0.91
EDC3-217ENST00000569606 ERICH3Q5RHP9 1530 aa20.69■□□□□ 0.9
EDC3-217ENST00000569606 GRIN2BQ13224 1484 aa20.68■□□□□ 0.9
EDC3-217ENST00000569606 CSRNP3Q8WYN3 585 aa20.67■□□□□ 0.9
EDC3-217ENST00000569606 IGF1RP08069 1367 aa20.67■□□□□ 0.9
EDC3-217ENST00000569606 CUL7Q14999 1698 aa20.63■□□□□ 0.89
EDC3-217ENST00000569606 SNAPC4Q5SXM2 1469 aa20.59■□□□□ 0.89
EDC3-217ENST00000569606 PRXQ9BXM0 1461 aa20.58■□□□□ 0.89
EDC3-217ENST00000569606 ADAMTS12P58397 1594 aa20.58■□□□□ 0.88
EDC3-217ENST00000569606 MAGI1Q96QZ7 1491 aaPredicted RBP20.57■□□□□ 0.88
EDC3-217ENST00000569606 KIF21BO75037 1637 aa20.57■□□□□ 0.88
EDC3-217ENST00000569606 CARMIL1Q5VZK9 1371 aa20.56■□□□□ 0.88
EDC3-217ENST00000569606 FHAD1B1AJZ9 1412 aa20.53■□□□□ 0.88
EDC3-217ENST00000569606 RAPGEF2Q9Y4G8 1499 aa20.51■□□□□ 0.87
EDC3-217ENST00000569606 SYNJ2O15056 1496 aa20.49■□□□□ 0.87
EDC3-217ENST00000569606 GOLGA3Q08378 1498 aa20.46■□□□□ 0.87
EDC3-217ENST00000569606 CHD1O14646 1710 aa20.44■□□□□ 0.86
EDC3-217ENST00000569606 GRIN2AQ12879 1464 aa20.43■□□□□ 0.86
EDC3-217ENST00000569606 EHMT2Q96KQ7 1210 aa20.42■□□□□ 0.86
EDC3-217ENST00000569606 LOC105371045A0A1W2PR82 267 aa20.41■□□□□ 0.86
EDC3-217ENST00000569606 CHMP7Q8WUX9 453 aaPredicted RBP20.4■□□□□ 0.86
EDC3-217ENST00000569606 FBLN2P98095 1184 aa20.36■□□□□ 0.85
EDC3-217ENST00000569606 CTTNBP2Q8WZ74 1663 aa20.35■□□□□ 0.85
EDC3-217ENST00000569606 CEP170Q5SW79 1584 aa20.34■□□□□ 0.85
EDC3-217ENST00000569606 UBTFP17480 764 aaKnown RBP20.32■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms