RNA–Protein interactions for RNA: ENST00000569518.5

VCPKMT-205, Transcript of valosin containing protein lysine methyltransferase, humanhuman

TSL 2

Gene VCPKMT, Length 1,827 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCPKMT-205ENST00000569518 NISCHQ9Y2I1 1504 aa51.09■■■■■ 5.77
VCPKMT-205ENST00000569518 CCDC180Q9P1Z9 1646 aa44.54■■■■■ 4.72
VCPKMT-205ENST00000569518 ZCCHC6Q5VYS8 1495 aaKnown RBP42.97■■■■■ 4.47
VCPKMT-205ENST00000569518 DCAF1Q9Y4B6 1507 aa42.28■■■■■ 4.36
VCPKMT-205ENST00000569518 DCAF8L2P0C7V8 631 aa41.96■■■■■ 4.31
VCPKMT-205ENST00000569518 ABCC9O60706 1549 aa41.93■■■■■ 4.3
VCPKMT-205ENST00000569518 MYO15BQ96JP2 1530 aa41.75■■■■■ 4.27
VCPKMT-205ENST00000569518 SHROOM4Q9ULL8 1493 aa41.65■■■■■ 4.26
VCPKMT-205ENST00000569518 NACADO15069 1562 aa41.42■■■■■ 4.22
VCPKMT-205ENST00000569518 RB1CC1Q8TDY2 1594 aa41.02■■■■■ 4.16
VCPKMT-205ENST00000569518 SCRIBQ14160 1630 aa40.93■■■■■ 4.14
VCPKMT-205ENST00000569518 UNC13AQ9UPW8 1703 aa40.28■■■■■ 4.04
VCPKMT-205ENST00000569518 SUPT5HO00267 1087 aaKnown RBP40.08■■■■■ 4.01
VCPKMT-205ENST00000569518 BICRAQ9NZM4 1560 aa39.85■■■■□ 3.97
VCPKMT-205ENST00000569518 CECR2Q9BXF3 1484 aa39.68■■■■□ 3.94
VCPKMT-205ENST00000569518 RSF1Q96T23 1441 aaPredicted RBP39.67■■■■□ 3.94
VCPKMT-205ENST00000569518 PABPN1Q86U42 306 aaKnown RBP eCLIP39.52■■■■□ 3.92
VCPKMT-205ENST00000569518 MROH2BQ7Z745 1585 aa39.48■■■■□ 3.91
VCPKMT-205ENST00000569518 BAZ1AQ9NRL2 1556 aaPredicted RBP39.43■■■■□ 3.9
VCPKMT-205ENST00000569518 SMARCA4P51532 1647 aa39.27■■■■□ 3.88
VCPKMT-205ENST00000569518 WIZO95785 1651 aa39.16■■■■□ 3.86
VCPKMT-205ENST00000569518 PEG3Q9GZU2 1588 aa38.82■■■■□ 3.8
VCPKMT-205ENST00000569518 TOP2AP11388 1531 aaKnown RBP38.77■■■■□ 3.8
VCPKMT-205ENST00000569518 EIF4G1Q04637 1599 aaKnown RBP38.6■■■■□ 3.77
VCPKMT-205ENST00000569518 ATAD2BQ9ULI0 1458 aa38.57■■■■□ 3.77
VCPKMT-205ENST00000569518 SMARCA2P51531 1590 aa38.55■■■■□ 3.76
VCPKMT-205ENST00000569518 CHIC1Q5VXU3 224 aa38.49■■■■□ 3.75
VCPKMT-205ENST00000569518 CCDC88BA6NC98 1476 aa38.35■■■■□ 3.73
VCPKMT-205ENST00000569518 BAZ1BQ9UIG0 1483 aaKnown RBP38.34■■■■□ 3.73
VCPKMT-205ENST00000569518 NCAPD3P42695 1498 aa38.23■■■■□ 3.71
VCPKMT-205ENST00000569518 HMGXB3Q12766 1538 aa38.21■■■■□ 3.71
VCPKMT-205ENST00000569518 CC2D2AQ9P2K1 1620 aa38■■■■□ 3.67
VCPKMT-205ENST00000569518 TRIM41Q8WV44 630 aa37.68■■■■□ 3.62
VCPKMT-205ENST00000569518 ABCC8Q09428 1581 aa37.58■■■■□ 3.61
VCPKMT-205ENST00000569518 CFTRP13569 1480 aa37.41■■■■□ 3.58
VCPKMT-205ENST00000569518 WRNQ14191 1432 aaPredicted RBP eCLIP37.31■■■■□ 3.56
VCPKMT-205ENST00000569518 PRDM2Q13029 1718 aa37.28■■■■□ 3.56
VCPKMT-205ENST00000569518 CADPSQ9ULU8 1353 aa37.22■■■■□ 3.55
VCPKMT-205ENST00000569518 SYNJ1O43426 1573 aa37.2■■■■□ 3.55
VCPKMT-205ENST00000569518 TOP2BQ02880 1626 aa37.04■■■■□ 3.52
VCPKMT-205ENST00000569518 BIVM-ERCC5R4GMW8 1640 aa37.02■■■■□ 3.52
VCPKMT-205ENST00000569518 LOC105371045A0A1W2PR82 267 aa36.99■■■■□ 3.51
VCPKMT-205ENST00000569518 DNAJC5BQ9UF47 199 aa36.99■■■■□ 3.51
VCPKMT-205ENST00000569518 FAM9AQ8IZU1 332 aaPredicted RBP36.98■■■■□ 3.51
VCPKMT-205ENST00000569518 CUX1P39880 1505 aa36.92■■■■□ 3.5
VCPKMT-205ENST00000569518 LAMC3Q9Y6N6 1575 aa36.91■■■■□ 3.5
VCPKMT-205ENST00000569518 SOGA1O94964 1423 aa36.88■■■■□ 3.49
VCPKMT-205ENST00000569518 NESP48681 1621 aa36.88■■■■□ 3.49
VCPKMT-205ENST00000569518 EEA1Q15075 1411 aa36.82■■■■□ 3.49
VCPKMT-205ENST00000569518 FANCD2Q9BXW9 1451 aa36.82■■■■□ 3.48
VCPKMT-205ENST00000569518 RUSC2Q8N2Y8 1516 aa36.75■■■■□ 3.47
VCPKMT-205ENST00000569518 CEP164Q9UPV0 1460 aa36.57■■■■□ 3.45
VCPKMT-205ENST00000569518 PDS5BQ9NTI5 1447 aa36.57■■■■□ 3.44
VCPKMT-205ENST00000569518 CSRNP3Q8WYN3 585 aa36.56■■■■□ 3.44
VCPKMT-205ENST00000569518 DNMBPQ6XZF7 1577 aa36.55■■■■□ 3.44
VCPKMT-205ENST00000569518 KIF21AQ7Z4S6 1674 aa36.48■■■■□ 3.43
VCPKMT-205ENST00000569518 FGD5Q6ZNL6 1462 aa36.47■■■■□ 3.43
VCPKMT-205ENST00000569518 TOPBP1Q92547 1522 aa36.46■■■■□ 3.43
VCPKMT-205ENST00000569518 EHMT2Q96KQ7 1210 aa36.41■■■■□ 3.42
VCPKMT-205ENST00000569518 KIF21BO75037 1637 aa36.4■■■■□ 3.42
VCPKMT-205ENST00000569518 URB2Q14146 1524 aaKnown RBP36.39■■■■□ 3.42
VCPKMT-205ENST00000569518 KIF27Q86VH2 1401 aa36.34■■■■□ 3.41
VCPKMT-205ENST00000569518 GOLGA3Q08378 1498 aa36.32■■■■□ 3.4
VCPKMT-205ENST00000569518 POLA1P09884 1462 aaPredicted RBP36.29■■■■□ 3.4
VCPKMT-205ENST00000569518 TNIKQ9UKE5 1360 aa36.23■■■■□ 3.39
VCPKMT-205ENST00000569518 CUX2O14529 1486 aa36.22■■■■□ 3.39
VCPKMT-205ENST00000569518 PRXQ9BXM0 1461 aa36.18■■■■□ 3.38
VCPKMT-205ENST00000569518 ABCA10Q8WWZ4 1543 aa36.17■■■■□ 3.38
VCPKMT-205ENST00000569518 RAD54L2Q9Y4B4 1467 aa36.14■■■■□ 3.38
VCPKMT-205ENST00000569518 RAPGEF2Q9Y4G8 1499 aa36.14■■■■□ 3.38
VCPKMT-205ENST00000569518 MRC2Q9UBG0 1479 aa36.13■■■■□ 3.37
VCPKMT-205ENST00000569518 ERICH3Q5RHP9 1530 aa36.13■■■■□ 3.37
VCPKMT-205ENST00000569518 WDR97A6NE52 1622 aa36.1■■■■□ 3.37
VCPKMT-205ENST00000569518 UBTFP17480 764 aaKnown RBP36.05■■■■□ 3.36
VCPKMT-205ENST00000569518 CEP162Q5TB80 1403 aa36.05■■■■□ 3.36
VCPKMT-205ENST00000569518 IGF1RP08069 1367 aa36.02■■■■□ 3.36
VCPKMT-205ENST00000569518 WDR62O43379 1518 aa35.97■■■■□ 3.35
VCPKMT-205ENST00000569518 TARBP1Q13395 1621 aaKnown RBP35.94■■■■□ 3.34
VCPKMT-205ENST00000569518 ERCC6Q03468 1493 aa35.91■■■■□ 3.34
VCPKMT-205ENST00000569518 ABCA5Q8WWZ7 1642 aa35.9■■■■□ 3.34
VCPKMT-205ENST00000569518 THOC2Q8NI27 1593 aaKnown RBP35.86■■■■□ 3.33
VCPKMT-205ENST00000569518 CARMIL1Q5VZK9 1371 aa35.81■■■■□ 3.32
VCPKMT-205ENST00000569518 CUL7Q14999 1698 aa35.77■■■■□ 3.32
VCPKMT-205ENST00000569518 TDRD9Q8NDG6 1382 aaKnown RBP35.75■■■■□ 3.31
VCPKMT-205ENST00000569518 GAPVD1Q14C86 1478 aa35.74■■■■□ 3.31
VCPKMT-205ENST00000569518 CLIP1P30622 1438 aa35.73■■■■□ 3.31
VCPKMT-205ENST00000569518 IFT140Q96RY7 1462 aa35.7■■■■□ 3.3
VCPKMT-205ENST00000569518 PBRM1Q86U86 1689 aa35.59■■■■□ 3.29
VCPKMT-205ENST00000569518 AQRO60306 1485 aaKnown RBP eCLIP35.53■■■■□ 3.281e-6■■■■□ 26.1
VCPKMT-205ENST00000569518 ZNF608Q9ULD9 1512 aaPredicted RBP35.51■■■■□ 3.28
VCPKMT-205ENST00000569518 VPS8Q8N3P4 1428 aa35.46■■■■□ 3.27
VCPKMT-205ENST00000569518 GRIN2BQ13224 1484 aa35.46■■■■□ 3.27
VCPKMT-205ENST00000569518 EIF4G3O43432 1585 aaKnown RBP35.43■■■■□ 3.26
VCPKMT-205ENST00000569518 ARAP1Q96P48 1450 aa35.42■■■■□ 3.26
VCPKMT-205ENST00000569518 ADAMTS12P58397 1594 aa35.42■■■■□ 3.26
VCPKMT-205ENST00000569518 CTTNBP2Q8WZ74 1663 aa35.4■■■■□ 3.26
VCPKMT-205ENST00000569518 RANGAP1P46060 587 aaPredicted RBP35.4■■■■□ 3.26
VCPKMT-205ENST00000569518 ARHGAP35Q9NRY4 1499 aa35.38■■■■□ 3.25
VCPKMT-205ENST00000569518 TRIM26Q12899 539 aaPredicted RBP35.37■■■■□ 3.25
VCPKMT-205ENST00000569518 FHAD1B1AJZ9 1412 aa35.37■■■■□ 3.25
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms