RNA–Protein interactions for RNA: ENST00000569455.1

CDH13-214, Transcript of cadherin 13, humanhuman

TSL 3

Gene CDH13, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH13-214ENST00000569455 NISCHQ9Y2I1 1504 aa17.5■□□□□ 0.39
CDH13-214ENST00000569455 CCDC180Q9P1Z9 1646 aa15.57■□□□□ 0.08
CDH13-214ENST00000569455 ABCC9O60706 1549 aa15.5■□□□□ 0.07
CDH13-214ENST00000569455 DNAJC5BQ9UF47 199 aa15.02■□□□□ -0
CDH13-214ENST00000569455 MYO15BQ96JP2 1530 aa14.62□□□□□ -0.07
CDH13-214ENST00000569455 NACADO15069 1562 aa14.6□□□□□ -0.07
CDH13-214ENST00000569455 ZCCHC6Q5VYS8 1495 aaKnown RBP14.6□□□□□ -0.07
CDH13-214ENST00000569455 DCAF1Q9Y4B6 1507 aa14.57□□□□□ -0.08
CDH13-214ENST00000569455 RB1CC1Q8TDY2 1594 aa14.57□□□□□ -0.08
CDH13-214ENST00000569455 DCAF8L2P0C7V8 631 aa14.46□□□□□ -0.09
CDH13-214ENST00000569455 DNAJC5Q9H3Z4 198 aa14.29□□□□□ -0.12
CDH13-214ENST00000569455 PABPN1Q86U42 306 aaKnown RBP eCLIP14.28□□□□□ -0.12
CDH13-214ENST00000569455 UNC13AQ9UPW8 1703 aa14.21□□□□□ -0.14
CDH13-214ENST00000569455 BICRAQ9NZM4 1560 aa14.12□□□□□ -0.15
CDH13-214ENST00000569455 SHROOM4Q9ULL8 1493 aa14.08□□□□□ -0.16
CDH13-214ENST00000569455 SCRIBQ14160 1630 aa14.08□□□□□ -0.16
CDH13-214ENST00000569455 CECR2Q9BXF3 1484 aa14.05□□□□□ -0.16
CDH13-214ENST00000569455 CC2D2AQ9P2K1 1620 aa14□□□□□ -0.17
CDH13-214ENST00000569455 EIF4G1Q04637 1599 aaKnown RBP13.83□□□□□ -0.2
CDH13-214ENST00000569455 CUX2O14529 1486 aa13.66□□□□□ -0.22
CDH13-214ENST00000569455 BAZ1AQ9NRL2 1556 aaPredicted RBP13.58□□□□□ -0.23
CDH13-214ENST00000569455 SMARCA4P51532 1647 aa13.54□□□□□ -0.24
CDH13-214ENST00000569455 SUPT5HO00267 1087 aaKnown RBP13.53□□□□□ -0.24
CDH13-214ENST00000569455 SMARCA2P51531 1590 aa13.48□□□□□ -0.25
CDH13-214ENST00000569455 PEG3Q9GZU2 1588 aa13.47□□□□□ -0.25
CDH13-214ENST00000569455 NCAPD3P42695 1498 aa13.46□□□□□ -0.25
CDH13-214ENST00000569455 ERCC6Q03468 1493 aa13.45□□□□□ -0.26
CDH13-214ENST00000569455 RSF1Q96T23 1441 aaPredicted RBP13.44□□□□□ -0.26
CDH13-214ENST00000569455 ATAD2BQ9ULI0 1458 aa13.43□□□□□ -0.26
CDH13-214ENST00000569455 MROH2BQ7Z745 1585 aa13.43□□□□□ -0.26
CDH13-214ENST00000569455 HMGXB3Q12766 1538 aa13.4□□□□□ -0.26
CDH13-214ENST00000569455 TRIM41Q8WV44 630 aa13.38□□□□□ -0.27
CDH13-214ENST00000569455 BAZ1BQ9UIG0 1483 aaKnown RBP13.33□□□□□ -0.28
CDH13-214ENST00000569455 WIZO95785 1651 aa13.31□□□□□ -0.28
CDH13-214ENST00000569455 TOP2AP11388 1531 aaKnown RBP13.21□□□□□ -0.29
CDH13-214ENST00000569455 THOC2Q8NI27 1593 aaKnown RBP13.18□□□□□ -0.3
CDH13-214ENST00000569455 NESP48681 1621 aa13.13□□□□□ -0.31
CDH13-214ENST00000569455 LAMC3Q9Y6N6 1575 aa13.09□□□□□ -0.31
CDH13-214ENST00000569455 CADPSQ9ULU8 1353 aa13.05□□□□□ -0.32
CDH13-214ENST00000569455 CCDC88BA6NC98 1476 aa13.03□□□□□ -0.32
CDH13-214ENST00000569455 CFTRP13569 1480 aa13□□□□□ -0.33
CDH13-214ENST00000569455 PDS5BQ9NTI5 1447 aa13□□□□□ -0.33
CDH13-214ENST00000569455 KIF21AQ7Z4S6 1674 aa12.99□□□□□ -0.33
CDH13-214ENST00000569455 PRDM2Q13029 1718 aa12.95□□□□□ -0.34
CDH13-214ENST00000569455 CHIC1Q5VXU3 224 aa12.92□□□□□ -0.34
CDH13-214ENST00000569455 FANCD2Q9BXW9 1451 aa12.87□□□□□ -0.35
CDH13-214ENST00000569455 OSCARQ8IYS5 282 aa12.87□□□□□ -0.35
CDH13-214ENST00000569455 WDR62O43379 1518 aa12.86□□□□□ -0.35
CDH13-214ENST00000569455 MRC2Q9UBG0 1479 aa12.85□□□□□ -0.35
CDH13-214ENST00000569455 CEP164Q9UPV0 1460 aa12.85□□□□□ -0.35
CDH13-214ENST00000569455 RIMBP3CA6NJZ7 1639 aa12.82□□□□□ -0.36
CDH13-214ENST00000569455 RIMBP3BA6NNM3 1639 aa12.82□□□□□ -0.36
CDH13-214ENST00000569455 RIMBP3Q9UFD9 1639 aa12.82□□□□□ -0.36
CDH13-214ENST00000569455 ABCC8Q09428 1581 aa12.79□□□□□ -0.36
CDH13-214ENST00000569455 AEBP2Q6ZN18 517 aaPredicted RBP12.76□□□□□ -0.37
CDH13-214ENST00000569455 ARHGEF11O15085 1522 aa12.71□□□□□ -0.38
CDH13-214ENST00000569455 URB2Q14146 1524 aaKnown RBP12.71□□□□□ -0.38
CDH13-214ENST00000569455 DNMBPQ6XZF7 1577 aa12.7□□□□□ -0.38
CDH13-214ENST00000569455 WRNQ14191 1432 aaPredicted RBP eCLIP12.69□□□□□ -0.38
CDH13-214ENST00000569455 TOPBP1Q92547 1522 aa12.67□□□□□ -0.38
CDH13-214ENST00000569455 TRHP20396 242 aaPredicted RBP12.66□□□□□ -0.38
CDH13-214ENST00000569455 SYNJ1O43426 1573 aa12.62□□□□□ -0.39
CDH13-214ENST00000569455 IFT140Q96RY7 1462 aa12.61□□□□□ -0.39
CDH13-214ENST00000569455 TOP2BQ02880 1626 aa12.61□□□□□ -0.39
CDH13-214ENST00000569455 BIVM-ERCC5R4GMW8 1640 aa12.61□□□□□ -0.39
CDH13-214ENST00000569455 CUX1P39880 1505 aa12.6□□□□□ -0.39
CDH13-214ENST00000569455 CYB5RLQ6IPT4 315 aa12.59□□□□□ -0.39
CDH13-214ENST00000569455 POLA1P09884 1462 aaPredicted RBP12.57□□□□□ -0.4
CDH13-214ENST00000569455 WDR97A6NE52 1622 aa12.56□□□□□ -0.4
CDH13-214ENST00000569455 FGD5Q6ZNL6 1462 aa12.54□□□□□ -0.4
CDH13-214ENST00000569455 TARBP1Q13395 1621 aaKnown RBP12.54□□□□□ -0.4
CDH13-214ENST00000569455 SOGA1O94964 1423 aa12.54□□□□□ -0.4
CDH13-214ENST00000569455 ARAP1Q96P48 1450 aa12.53□□□□□ -0.4
CDH13-214ENST00000569455 EEA1Q15075 1411 aa12.52□□□□□ -0.41
CDH13-214ENST00000569455 ABCA10Q8WWZ4 1543 aa12.48□□□□□ -0.41
CDH13-214ENST00000569455 FAM9AQ8IZU1 332 aaPredicted RBP12.48□□□□□ -0.41
CDH13-214ENST00000569455 RAD54L2Q9Y4B4 1467 aa12.46□□□□□ -0.41
CDH13-214ENST00000569455 ZNF608Q9ULD9 1512 aaPredicted RBP12.46□□□□□ -0.42
CDH13-214ENST00000569455 EIF4G3O43432 1585 aaKnown RBP12.44□□□□□ -0.42
CDH13-214ENST00000569455 CHD1O14646 1710 aa12.43□□□□□ -0.42
CDH13-214ENST00000569455 ABCA5Q8WWZ7 1642 aa12.4□□□□□ -0.42
CDH13-214ENST00000569455 AQRO60306 1485 aaKnown RBP eCLIP12.4□□□□□ -0.42
CDH13-214ENST00000569455 CSRNP3Q8WYN3 585 aa12.4□□□□□ -0.42
CDH13-214ENST00000569455 RUSC2Q8N2Y8 1516 aa12.4□□□□□ -0.42
CDH13-214ENST00000569455 TDRD9Q8NDG6 1382 aaKnown RBP12.4□□□□□ -0.42
CDH13-214ENST00000569455 GRIN2BQ13224 1484 aa12.4□□□□□ -0.43
CDH13-214ENST00000569455 GAPVD1Q14C86 1478 aa12.4□□□□□ -0.43
CDH13-214ENST00000569455 KIF27Q86VH2 1401 aa12.39□□□□□ -0.43
CDH13-214ENST00000569455 LOC105371045A0A1W2PR82 267 aa12.38□□□□□ -0.43
CDH13-214ENST00000569455 MAGI1Q96QZ7 1491 aaPredicted RBP12.38□□□□□ -0.43
CDH13-214ENST00000569455 ERICH3Q5RHP9 1530 aa12.36□□□□□ -0.43
CDH13-214ENST00000569455 PBRM1Q86U86 1689 aa12.35□□□□□ -0.43
CDH13-214ENST00000569455 KIF21BO75037 1637 aa12.35□□□□□ -0.43
CDH13-214ENST00000569455 SYNJ2O15056 1496 aa12.31□□□□□ -0.44
CDH13-214ENST00000569455 GOLGA3Q08378 1498 aa12.31□□□□□ -0.44
CDH13-214ENST00000569455 SNAPC4Q5SXM2 1469 aa12.3□□□□□ -0.44
CDH13-214ENST00000569455 ILDR1Q86SU0 546 aaPredicted RBP12.3□□□□□ -0.44
CDH13-214ENST00000569455 FBLN2P98095 1184 aa12.28□□□□□ -0.44
CDH13-214ENST00000569455 FHAD1B1AJZ9 1412 aa12.28□□□□□ -0.44
CDH13-214ENST00000569455 CUL7Q14999 1698 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 69.3 ms