RNA–Protein interactions for RNA: ENST00000569394.5

GTF3C1-210, Transcript of general transcription factor IIIC subunit 1, humanhuman

TSL 3

Gene GTF3C1, Length 566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3C1-210ENST00000569394 NISCHQ9Y2I1 1504 aa21.76■■□□□ 1.07
GTF3C1-210ENST00000569394 CHIC1Q5VXU3 224 aa19.42■□□□□ 0.7
GTF3C1-210ENST00000569394 AEBP2Q6ZN18 517 aaPredicted RBP19.39■□□□□ 0.69
GTF3C1-210ENST00000569394 CCDC180Q9P1Z9 1646 aa19.3■□□□□ 0.68
GTF3C1-210ENST00000569394 ABCC9O60706 1549 aa19.15■□□□□ 0.66
GTF3C1-210ENST00000569394 DCAF8L2P0C7V8 631 aa18.52■□□□□ 0.56
GTF3C1-210ENST00000569394 RB1CC1Q8TDY2 1594 aa18.25■□□□□ 0.51
GTF3C1-210ENST00000569394 NACADO15069 1562 aa18.17■□□□□ 0.5
GTF3C1-210ENST00000569394 ZCCHC6Q5VYS8 1495 aaKnown RBP18.1■□□□□ 0.49
GTF3C1-210ENST00000569394 PABPN1Q86U42 306 aaKnown RBP eCLIP17.95■□□□□ 0.46
GTF3C1-210ENST00000569394 UNC13AQ9UPW8 1703 aa17.91■□□□□ 0.46
GTF3C1-210ENST00000569394 MYO15BQ96JP2 1530 aa17.91■□□□□ 0.46
GTF3C1-210ENST00000569394 DCAF1Q9Y4B6 1507 aa17.87■□□□□ 0.45
GTF3C1-210ENST00000569394 DNAJC5BQ9UF47 199 aa17.84■□□□□ 0.45
GTF3C1-210ENST00000569394 SCRIBQ14160 1630 aa17.8■□□□□ 0.44
GTF3C1-210ENST00000569394 BICRAQ9NZM4 1560 aa17.71■□□□□ 0.43
GTF3C1-210ENST00000569394 SHROOM4Q9ULL8 1493 aa17.46■□□□□ 0.39
GTF3C1-210ENST00000569394 EIF4G1Q04637 1599 aaKnown RBP17.26■□□□□ 0.35
GTF3C1-210ENST00000569394 CC2D2AQ9P2K1 1620 aa17.25■□□□□ 0.35
GTF3C1-210ENST00000569394 PHF23Q9BUL5 403 aaPredicted RBP17.22■□□□□ 0.35
GTF3C1-210ENST00000569394 CECR2Q9BXF3 1484 aa17.13■□□□□ 0.33
GTF3C1-210ENST00000569394 SMARCA4P51532 1647 aa16.92■□□□□ 0.3
GTF3C1-210ENST00000569394 BAZ1AQ9NRL2 1556 aaPredicted RBP16.85■□□□□ 0.29
GTF3C1-210ENST00000569394 MROH2BQ7Z745 1585 aa16.84■□□□□ 0.29
GTF3C1-210ENST00000569394 ATAD2BQ9ULI0 1458 aa16.83■□□□□ 0.28
GTF3C1-210ENST00000569394 NCAPD3P42695 1498 aa16.77■□□□□ 0.28
GTF3C1-210ENST00000569394 SMARCA2P51531 1590 aa16.77■□□□□ 0.27
GTF3C1-210ENST00000569394 BAZ1BQ9UIG0 1483 aaKnown RBP16.73■□□□□ 0.27
GTF3C1-210ENST00000569394 WIZO95785 1651 aa16.71■□□□□ 0.27
GTF3C1-210ENST00000569394 HMGXB3Q12766 1538 aa16.66■□□□□ 0.26
GTF3C1-210ENST00000569394 DNAJC5Q9H3Z4 198 aa16.66■□□□□ 0.26
GTF3C1-210ENST00000569394 PEG3Q9GZU2 1588 aa16.64■□□□□ 0.25
GTF3C1-210ENST00000569394 RSF1Q96T23 1441 aaPredicted RBP16.6■□□□□ 0.25
GTF3C1-210ENST00000569394 NESP48681 1621 aa16.55■□□□□ 0.24
GTF3C1-210ENST00000569394 ERCC6Q03468 1493 aa16.48■□□□□ 0.23
GTF3C1-210ENST00000569394 TOP2AP11388 1531 aaKnown RBP16.42■□□□□ 0.22
GTF3C1-210ENST00000569394 SUPT5HO00267 1087 aaKnown RBP16.39■□□□□ 0.21
GTF3C1-210ENST00000569394 LAMC3Q9Y6N6 1575 aa16.34■□□□□ 0.21
GTF3C1-210ENST00000569394 CADPSQ9ULU8 1353 aa16.33■□□□□ 0.2
GTF3C1-210ENST00000569394 KIF21AQ7Z4S6 1674 aa16.32■□□□□ 0.2
GTF3C1-210ENST00000569394 CCDC88BA6NC98 1476 aa16.29■□□□□ 0.2
GTF3C1-210ENST00000569394 PDS5BQ9NTI5 1447 aa16.27■□□□□ 0.19
GTF3C1-210ENST00000569394 CUX2O14529 1486 aa16.26■□□□□ 0.19
GTF3C1-210ENST00000569394 SENP3Q9H4L4 574 aaPredicted RBP16.21■□□□□ 0.19
GTF3C1-210ENST00000569394 THOC2Q8NI27 1593 aaKnown RBP16.2■□□□□ 0.18
GTF3C1-210ENST00000569394 CFTRP13569 1480 aa16.19■□□□□ 0.18
GTF3C1-210ENST00000569394 FANCD2Q9BXW9 1451 aa16.18■□□□□ 0.18
GTF3C1-210ENST00000569394 CEP164Q9UPV0 1460 aa16.16■□□□□ 0.18
GTF3C1-210ENST00000569394 MRC2Q9UBG0 1479 aa16.12■□□□□ 0.17
GTF3C1-210ENST00000569394 PRDM2Q13029 1718 aa16.09■□□□□ 0.17
GTF3C1-210ENST00000569394 WDR62O43379 1518 aa16.04■□□□□ 0.16
GTF3C1-210ENST00000569394 URB2Q14146 1524 aaKnown RBP16.03■□□□□ 0.16
GTF3C1-210ENST00000569394 PLPPR3Q6T4P5 718 aa15.96■□□□□ 0.15
GTF3C1-210ENST00000569394 TOPBP1Q92547 1522 aa15.91■□□□□ 0.14
GTF3C1-210ENST00000569394 DNMBPQ6XZF7 1577 aa15.86■□□□□ 0.13
GTF3C1-210ENST00000569394 ABCC8Q09428 1581 aa15.81■□□□□ 0.12
GTF3C1-210ENST00000569394 ZNF608Q9ULD9 1512 aaPredicted RBP15.8■□□□□ 0.12
GTF3C1-210ENST00000569394 CUX1P39880 1505 aa15.79■□□□□ 0.12
GTF3C1-210ENST00000569394 RAD54L2Q9Y4B4 1467 aa15.79■□□□□ 0.12
GTF3C1-210ENST00000569394 IFT140Q96RY7 1462 aa15.78■□□□□ 0.12
GTF3C1-210ENST00000569394 TRIM41Q8WV44 630 aa15.77■□□□□ 0.12
GTF3C1-210ENST00000569394 POLA1P09884 1462 aaPredicted RBP15.77■□□□□ 0.11
GTF3C1-210ENST00000569394 FGD5Q6ZNL6 1462 aa15.76■□□□□ 0.11
GTF3C1-210ENST00000569394 SOGA1O94964 1423 aa15.74■□□□□ 0.11
GTF3C1-210ENST00000569394 AQRO60306 1485 aaKnown RBP eCLIP15.73■□□□□ 0.115e-9■■■■■ 30.7
GTF3C1-210ENST00000569394 TARBP1Q13395 1621 aaKnown RBP15.71■□□□□ 0.11
GTF3C1-210ENST00000569394 TDRD9Q8NDG6 1382 aaKnown RBP15.71■□□□□ 0.11
GTF3C1-210ENST00000569394 EIF4G3O43432 1585 aaKnown RBP15.7■□□□□ 0.1
GTF3C1-210ENST00000569394 FBLN2P98095 1184 aa15.67■□□□□ 0.1
GTF3C1-210ENST00000569394 WRNQ14191 1432 aaPredicted RBP eCLIP15.67■□□□□ 0.1
GTF3C1-210ENST00000569394 SYNJ1O43426 1573 aa15.66■□□□□ 0.1
GTF3C1-210ENST00000569394 OSCARQ8IYS5 282 aa15.6■□□□□ 0.09
GTF3C1-210ENST00000569394 TOP2BQ02880 1626 aa15.6■□□□□ 0.09
GTF3C1-210ENST00000569394 BIVM-ERCC5R4GMW8 1640 aa15.59■□□□□ 0.09
GTF3C1-210ENST00000569394 WDR97A6NE52 1622 aa15.57■□□□□ 0.08
GTF3C1-210ENST00000569394 CHD1O14646 1710 aa15.55■□□□□ 0.08
GTF3C1-210ENST00000569394 SNAPC4Q5SXM2 1469 aa15.55■□□□□ 0.08
GTF3C1-210ENST00000569394 GAPVD1Q14C86 1478 aa15.53■□□□□ 0.08
GTF3C1-210ENST00000569394 PBRM1Q86U86 1689 aa15.53■□□□□ 0.08
GTF3C1-210ENST00000569394 ABCA10Q8WWZ4 1543 aa15.52■□□□□ 0.07
GTF3C1-210ENST00000569394 CHMP7Q8WUX9 453 aaPredicted RBP15.51■□□□□ 0.07
GTF3C1-210ENST00000569394 GRIN2BQ13224 1484 aa15.51■□□□□ 0.07
GTF3C1-210ENST00000569394 ABCA5Q8WWZ7 1642 aa15.48■□□□□ 0.07
GTF3C1-210ENST00000569394 MAGI1Q96QZ7 1491 aaPredicted RBP15.43■□□□□ 0.06
GTF3C1-210ENST00000569394 SYNJ2O15056 1496 aa15.4■□□□□ 0.06
GTF3C1-210ENST00000569394 ADAMTS12P58397 1594 aa15.36■□□□□ 0.05
GTF3C1-210ENST00000569394 RIMBP3CA6NJZ7 1639 aa15.35■□□□□ 0.05
GTF3C1-210ENST00000569394 RIMBP3BA6NNM3 1639 aa15.35■□□□□ 0.05
GTF3C1-210ENST00000569394 RIMBP3Q9UFD9 1639 aa15.35■□□□□ 0.05
GTF3C1-210ENST00000569394 KIF27Q86VH2 1401 aa15.34■□□□□ 0.05
GTF3C1-210ENST00000569394 ARHGEF11O15085 1522 aa15.33■□□□□ 0.04
GTF3C1-210ENST00000569394 CYB5RLQ6IPT4 315 aa15.32■□□□□ 0.04
GTF3C1-210ENST00000569394 GRIN2AQ12879 1464 aa15.32■□□□□ 0.04
GTF3C1-210ENST00000569394 ERICH3Q5RHP9 1530 aa15.32■□□□□ 0.04
GTF3C1-210ENST00000569394 FHAD1B1AJZ9 1412 aa15.31■□□□□ 0.04
GTF3C1-210ENST00000569394 RUSC2Q8N2Y8 1516 aa15.3■□□□□ 0.04
GTF3C1-210ENST00000569394 CLASP1Q7Z460 1538 aa15.28■□□□□ 0.04
GTF3C1-210ENST00000569394 IGF1RP08069 1367 aa15.28■□□□□ 0.04
GTF3C1-210ENST00000569394 CEP170Q5SW79 1584 aa15.28■□□□□ 0.04
GTF3C1-210ENST00000569394 FAM9AQ8IZU1 332 aaPredicted RBP15.22■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms