RNA–Protein interactions for RNA: ENST00000569390.1

NEIL1-222, Transcript of nei like DNA glycosylase 1, human

TSL 3

Gene NEIL1, Length 346 nt, Biotype processed transcript.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NEIL1-222	ENST00000569390	NISCH	Q9Y2I1	1504 aa		46.13	■■■■■ 4.98
NEIL1-222	ENST00000569390	CCDC180	Q9P1Z9	1646 aa		41.22	■■■■■ 4.19
NEIL1-222	ENST00000569390	ABCC9	O60706	1549 aa		40.68	■■■■■ 4.1
NEIL1-222	ENST00000569390	RB1CC1	Q8TDY2	1594 aa		39.02	■■■■□ 3.84
NEIL1-222	ENST00000569390	NACAD	O15069	1562 aa		38.88	■■■■□ 3.81
NEIL1-222	ENST00000569390	DCAF8L2	P0C7V8	631 aa		38.67	■■■■□ 3.78
NEIL1-222	ENST00000569390	MYO15B	Q96JP2	1530 aa		38.56	■■■■□ 3.76
NEIL1-222	ENST00000569390	ZCCHC6	Q5VYS8	1495 aa	Known RBP	38.35	■■■■□ 3.73
NEIL1-222	ENST00000569390	DCAF1	Q9Y4B6	1507 aa		38.21	■■■■□ 3.71
NEIL1-222	ENST00000569390	UNC13A	Q9UPW8	1703 aa		38.01	■■■■□ 3.67
NEIL1-222	ENST00000569390	PABPN1	Q86U42	306 aa	Known RBP eCLIP	37.92	■■■■□ 3.66
NEIL1-222	ENST00000569390	BICRA	Q9NZM4	1560 aa		37.78	■■■■□ 3.64
NEIL1-222	ENST00000569390	DNAJC5B	Q9UF47	199 aa		37.68	■■■■□ 3.62
NEIL1-222	ENST00000569390	SHROOM4	Q9ULL8	1493 aa		37.51	■■■■□ 3.59
NEIL1-222	ENST00000569390	SCRIB	Q14160	1630 aa		37.5	■■■■□ 3.59
NEIL1-222	ENST00000569390	EIF4G1	Q04637	1599 aa	Known RBP	36.86	■■■■□ 3.49
NEIL1-222	ENST00000569390	CC2D2A	Q9P2K1	1620 aa		36.79	■■■■□ 3.48
NEIL1-222	ENST00000569390	CECR2	Q9BXF3	1484 aa		36.64	■■■■□ 3.46
NEIL1-222	ENST00000569390	NCAPD3	P42695	1498 aa		35.88	■■■■□ 3.33
NEIL1-222	ENST00000569390	SMARCA4	P51532	1647 aa		35.87	■■■■□ 3.33
NEIL1-222	ENST00000569390	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	35.81	■■■■□ 3.32
NEIL1-222	ENST00000569390	ATAD2B	Q9ULI0	1458 aa		35.8	■■■■□ 3.32
NEIL1-222	ENST00000569390	SMARCA2	P51531	1590 aa		35.78	■■■■□ 3.32
NEIL1-222	ENST00000569390	HMGXB3	Q12766	1538 aa		35.67	■■■■□ 3.3
NEIL1-222	ENST00000569390	PEG3	Q9GZU2	1588 aa		35.57	■■■■□ 3.28
NEIL1-222	ENST00000569390	BAZ1B	Q9UIG0	1483 aa	Known RBP	35.5	■■■■□ 3.27
NEIL1-222	ENST00000569390	MROH2B	Q7Z745	1585 aa		35.5	■■■■□ 3.27
NEIL1-222	ENST00000569390	ERCC6	Q03468	1493 aa		35.16	■■■■□ 3.22
NEIL1-222	ENST00000569390	WIZ	O95785	1651 aa		35.06	■■■■□ 3.2
NEIL1-222	ENST00000569390	NES	P48681	1621 aa		35.05	■■■■□ 3.2
NEIL1-222	ENST00000569390	LAMC3	Q9Y6N6	1575 aa		35	■■■■□ 3.19
NEIL1-222	ENST00000569390	CUX2	O14529	1486 aa		34.97	■■■■□ 3.19
NEIL1-222	ENST00000569390	RSF1	Q96T23	1441 aa	Predicted RBP	34.97	■■■■□ 3.19
NEIL1-222	ENST00000569390	PDS5B	Q9NTI5	1447 aa		34.81	■■■■□ 3.16
NEIL1-222	ENST00000569390	CADPS	Q9ULU8	1353 aa		34.8	■■■■□ 3.16
NEIL1-222	ENST00000569390	TOP2A	P11388	1531 aa	Known RBP	34.75	■■■■□ 3.15
NEIL1-222	ENST00000569390	THOC2	Q8NI27	1593 aa	Known RBP	34.65	■■■■□ 3.14
NEIL1-222	ENST00000569390	KIF21A	Q7Z4S6	1674 aa		34.62	■■■■□ 3.13
NEIL1-222	ENST00000569390	CFTR	P13569	1480 aa		34.51	■■■■□ 3.11
NEIL1-222	ENST00000569390	MRC2	Q9UBG0	1479 aa		34.44	■■■■□ 3.1
NEIL1-222	ENST00000569390	CEP164	Q9UPV0	1460 aa		34.4	■■■■□ 3.1
NEIL1-222	ENST00000569390	FANCD2	Q9BXW9	1451 aa		34.39	■■■■□ 3.1
NEIL1-222	ENST00000569390	DNAJC5	Q9H3Z4	198 aa		34.37	■■■■□ 3.09
NEIL1-222	ENST00000569390	WDR62	O43379	1518 aa		34.33	■■■■□ 3.09
NEIL1-222	ENST00000569390	CCDC88B	A6NC98	1476 aa		34.31	■■■■□ 3.08
NEIL1-222	ENST00000569390	PRDM2	Q13029	1718 aa		34.16	■■■■□ 3.06
NEIL1-222	ENST00000569390	URB2	Q14146	1524 aa	Known RBP	34.04	■■■■□ 3.04
NEIL1-222	ENST00000569390	ABCC8	Q09428	1581 aa		33.84	■■■■□ 3.01
NEIL1-222	ENST00000569390	TOPBP1	Q92547	1522 aa		33.78	■■■■□ 3
NEIL1-222	ENST00000569390	SUPT5H	O00267	1087 aa	Known RBP	33.72	■■■□□ 2.99
NEIL1-222	ENST00000569390	DNMBP	Q6XZF7	1577 aa		33.72	■■■□□ 2.99
NEIL1-222	ENST00000569390	IFT140	Q96RY7	1462 aa		33.71	■■■□□ 2.99
NEIL1-222	ENST00000569390	ZNF608	Q9ULD9	1512 aa	Predicted RBP	33.51	■■■□□ 2.95
NEIL1-222	ENST00000569390	POLA1	P09884	1462 aa	Predicted RBP	33.46	■■■□□ 2.95
NEIL1-222	ENST00000569390	OSCAR	Q8IYS5	282 aa		33.44	■■■□□ 2.94
NEIL1-222	ENST00000569390	TARBP1	Q13395	1621 aa	Known RBP	33.42	■■■□□ 2.94
NEIL1-222	ENST00000569390	EIF4G3	O43432	1585 aa	Known RBP	33.38	■■■□□ 2.93
NEIL1-222	ENST00000569390	CUX1	P39880	1505 aa		33.33	■■■□□ 2.93
NEIL1-222	ENST00000569390	SOGA1	O94964	1423 aa		33.33	■■■□□ 2.93
NEIL1-222	ENST00000569390	FGD5	Q6ZNL6	1462 aa		33.31	■■■□□ 2.92
NEIL1-222	ENST00000569390	AQR	O60306	1485 aa	Known RBP eCLIP	33.29	■■■□□ 2.92
NEIL1-222	ENST00000569390	RAD54L2	Q9Y4B4	1467 aa		33.28	■■■□□ 2.92
NEIL1-222	ENST00000569390	WDR97	A6NE52	1622 aa		33.23	■■■□□ 2.91
NEIL1-222	ENST00000569390	TDRD9	Q8NDG6	1382 aa	Known RBP	33.17	■■■□□ 2.9
NEIL1-222	ENST00000569390	GRIN2B	Q13224	1484 aa		33.02	■■■□□ 2.88
NEIL1-222	ENST00000569390	WRN	Q14191	1432 aa	Predicted RBP eCLIP	33.02	■■■□□ 2.88
NEIL1-222	ENST00000569390	CHD1	O14646	1710 aa		33.01	■■■□□ 2.87
NEIL1-222	ENST00000569390	TRIM41	Q8WV44	630 aa		33	■■■□□ 2.87
NEIL1-222	ENST00000569390	ABCA10	Q8WWZ4	1543 aa		33	■■■□□ 2.87
NEIL1-222	ENST00000569390	FBLN2	P98095	1184 aa		32.99	■■■□□ 2.87
NEIL1-222	ENST00000569390	SNAPC4	Q5SXM2	1469 aa		32.99	■■■□□ 2.87
NEIL1-222	ENST00000569390	MAGI1	Q96QZ7	1491 aa	Predicted RBP	32.99	■■■□□ 2.87
NEIL1-222	ENST00000569390	TOP2B	Q02880	1626 aa		32.96	■■■□□ 2.87
NEIL1-222	ENST00000569390	BIVM-ERCC5	R4GMW8	1640 aa		32.95	■■■□□ 2.87
NEIL1-222	ENST00000569390	GAPVD1	Q14C86	1478 aa		32.94	■■■□□ 2.86
NEIL1-222	ENST00000569390	SYNJ1	O43426	1573 aa		32.88	■■■□□ 2.85
NEIL1-222	ENST00000569390	RIMBP3C	A6NJZ7	1639 aa		32.88	■■■□□ 2.85
NEIL1-222	ENST00000569390	RIMBP3B	A6NNM3	1639 aa		32.88	■■■□□ 2.85
NEIL1-222	ENST00000569390	ABCA5	Q8WWZ7	1642 aa		32.88	■■■□□ 2.85
NEIL1-222	ENST00000569390	RIMBP3	Q9UFD9	1639 aa		32.88	■■■□□ 2.85
NEIL1-222	ENST00000569390	CHMP7	Q8WUX9	453 aa	Predicted RBP	32.87	■■■□□ 2.85
NEIL1-222	ENST00000569390	ARHGEF11	O15085	1522 aa		32.86	■■■□□ 2.85
NEIL1-222	ENST00000569390	SYNJ2	O15056	1496 aa		32.85	■■■□□ 2.85
NEIL1-222	ENST00000569390	PBRM1	Q86U86	1689 aa		32.84	■■■□□ 2.85
NEIL1-222	ENST00000569390	CLASP1	Q7Z460	1538 aa		32.7	■■■□□ 2.83
NEIL1-222	ENST00000569390	ERICH3	Q5RHP9	1530 aa		32.61	■■■□□ 2.81
NEIL1-222	ENST00000569390	ADAMTS12	P58397	1594 aa		32.6	■■■□□ 2.81
NEIL1-222	ENST00000569390	GRIN2A	Q12879	1464 aa		32.57	■■■□□ 2.8
NEIL1-222	ENST00000569390	FHAD1	B1AJZ9	1412 aa		32.57	■■■□□ 2.8
NEIL1-222	ENST00000569390	CYB5RL	Q6IPT4	315 aa		32.56	■■■□□ 2.8
NEIL1-222	ENST00000569390	ARAP1	Q96P48	1450 aa		32.54	■■■□□ 2.8
NEIL1-222	ENST00000569390	NUP160	Q12769	1436 aa		32.46	■■■□□ 2.79
NEIL1-222	ENST00000569390	CEP170	Q5SW79	1584 aa		32.38	■■■□□ 2.77
NEIL1-222	ENST00000569390	KIF27	Q86VH2	1401 aa		32.38	■■■□□ 2.77
NEIL1-222	ENST00000569390	IGF1R	P08069	1367 aa		32.26	■■■□□ 2.75
NEIL1-222	ENST00000569390	SHROOM2	Q13796	1616 aa		32.23	■■■□□ 2.75
NEIL1-222	ENST00000569390	CUL7	Q14999	1698 aa		32.22	■■■□□ 2.75
NEIL1-222	ENST00000569390	ERCC6L2	Q5T890	1561 aa		32.14	■■■□□ 2.74
NEIL1-222	ENST00000569390	RUSC2	Q8N2Y8	1516 aa		32.12	■■■□□ 2.73
NEIL1-222	ENST00000569390	JPH4	Q96JJ6	628 aa		32.11	■■■□□ 2.73

Retrieved 100 of 20,778 RNA–protein pairs in 63.2 ms