RNA–Protein interactions for RNA: ENST00000569336.2

CLN6-209, Transcript of CLN6, transmembrane ER protein, humanhuman

Gene CLN6, Length 557 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-209ENST00000569336 NISCHQ9Y2I1 1504 aa24■■□□□ 1.43
CLN6-209ENST00000569336 CCDC180Q9P1Z9 1646 aa21.6■■□□□ 1.05
CLN6-209ENST00000569336 ABCC9O60706 1549 aa20.86■□□□□ 0.93
CLN6-209ENST00000569336 RB1CC1Q8TDY2 1594 aa20.23■□□□□ 0.83
CLN6-209ENST00000569336 NACADO15069 1562 aa20.17■□□□□ 0.82
CLN6-209ENST00000569336 MYO15BQ96JP2 1530 aa20.03■□□□□ 0.8
CLN6-209ENST00000569336 ZCCHC6Q5VYS8 1495 aaKnown RBP20.02■□□□□ 0.8
CLN6-209ENST00000569336 UNC13AQ9UPW8 1703 aa19.94■□□□□ 0.78
CLN6-209ENST00000569336 DCAF1Q9Y4B6 1507 aa19.93■□□□□ 0.78
CLN6-209ENST00000569336 DNAJC5BQ9UF47 199 aa19.9■□□□□ 0.78
CLN6-209ENST00000569336 DCAF8L2P0C7V8 631 aa19.87■□□□□ 0.77
CLN6-209ENST00000569336 SCRIBQ14160 1630 aa19.55■□□□□ 0.72
CLN6-209ENST00000569336 BICRAQ9NZM4 1560 aa19.54■□□□□ 0.72
CLN6-209ENST00000569336 SHROOM4Q9ULL8 1493 aa19.43■□□□□ 0.7
CLN6-209ENST00000569336 PABPN1Q86U42 306 aaKnown RBP eCLIP19.35■□□□□ 0.69
CLN6-209ENST00000569336 EIF4G1Q04637 1599 aaKnown RBP19.06■□□□□ 0.64
CLN6-209ENST00000569336 CC2D2AQ9P2K1 1620 aa18.99■□□□□ 0.63
CLN6-209ENST00000569336 DNAJC5Q9H3Z4 198 aa18.83■□□□□ 0.6
CLN6-209ENST00000569336 CECR2Q9BXF3 1484 aa18.77■□□□□ 0.6
CLN6-209ENST00000569336 SMARCA4P51532 1647 aa18.73■□□□□ 0.59
CLN6-209ENST00000569336 BAZ1AQ9NRL2 1556 aaPredicted RBP18.68■□□□□ 0.58
CLN6-209ENST00000569336 SMARCA2P51531 1590 aa18.6■□□□□ 0.57
CLN6-209ENST00000569336 PEG3Q9GZU2 1588 aa18.55■□□□□ 0.56
CLN6-209ENST00000569336 HMGXB3Q12766 1538 aa18.54■□□□□ 0.56
CLN6-209ENST00000569336 ATAD2BQ9ULI0 1458 aa18.5■□□□□ 0.55
CLN6-209ENST00000569336 NCAPD3P42695 1498 aa18.49■□□□□ 0.55
CLN6-209ENST00000569336 MROH2BQ7Z745 1585 aa18.47■□□□□ 0.55
CLN6-209ENST00000569336 BAZ1BQ9UIG0 1483 aaKnown RBP18.41■□□□□ 0.54
CLN6-209ENST00000569336 WIZO95785 1651 aa18.37■□□□□ 0.53
CLN6-209ENST00000569336 RSF1Q96T23 1441 aaPredicted RBP18.19■□□□□ 0.5
CLN6-209ENST00000569336 TOP2AP11388 1531 aaKnown RBP18.17■□□□□ 0.5
CLN6-209ENST00000569336 LAMC3Q9Y6N6 1575 aa18.16■□□□□ 0.5
CLN6-209ENST00000569336 PRDM2Q13029 1718 aa18.11■□□□□ 0.49
CLN6-209ENST00000569336 KIF21AQ7Z4S6 1674 aa18.06■□□□□ 0.48
CLN6-209ENST00000569336 ERCC6Q03468 1493 aa18.05■□□□□ 0.48
CLN6-209ENST00000569336 NESP48681 1621 aa18.04■□□□□ 0.48
CLN6-209ENST00000569336 THOC2Q8NI27 1593 aaKnown RBP17.94■□□□□ 0.46
CLN6-209ENST00000569336 CADPSQ9ULU8 1353 aa17.91■□□□□ 0.46
CLN6-209ENST00000569336 PDS5BQ9NTI5 1447 aa17.91■□□□□ 0.46
CLN6-209ENST00000569336 CUX2O14529 1486 aa17.91■□□□□ 0.46
CLN6-209ENST00000569336 TRIM41Q8WV44 630 aa17.86■□□□□ 0.45
CLN6-209ENST00000569336 CFTRP13569 1480 aa17.85■□□□□ 0.45
CLN6-209ENST00000569336 CCDC88BA6NC98 1476 aa17.83■□□□□ 0.45
CLN6-209ENST00000569336 CEP164Q9UPV0 1460 aa17.81■□□□□ 0.44
CLN6-209ENST00000569336 FANCD2Q9BXW9 1451 aa17.77■□□□□ 0.44
CLN6-209ENST00000569336 MRC2Q9UBG0 1479 aa17.76■□□□□ 0.43
CLN6-209ENST00000569336 WDR62O43379 1518 aa17.75■□□□□ 0.43
CLN6-209ENST00000569336 SUPT5HO00267 1087 aaKnown RBP17.62■□□□□ 0.41
CLN6-209ENST00000569336 URB2Q14146 1524 aaKnown RBP17.59■□□□□ 0.41
CLN6-209ENST00000569336 ABCC8Q09428 1581 aa17.56■□□□□ 0.4
CLN6-209ENST00000569336 DNMBPQ6XZF7 1577 aa17.56■□□□□ 0.4
CLN6-209ENST00000569336 TOPBP1Q92547 1522 aa17.5■□□□□ 0.39
CLN6-209ENST00000569336 IFT140Q96RY7 1462 aa17.4■□□□□ 0.38
CLN6-209ENST00000569336 TARBP1Q13395 1621 aaKnown RBP17.39■□□□□ 0.37
CLN6-209ENST00000569336 EIF4G3O43432 1585 aaKnown RBP17.36■□□□□ 0.37
CLN6-209ENST00000569336 CUX1P39880 1505 aa17.36■□□□□ 0.37
CLN6-209ENST00000569336 WDR97A6NE52 1622 aa17.35■□□□□ 0.37
CLN6-209ENST00000569336 BIVM-ERCC5R4GMW8 1640 aa17.35■□□□□ 0.37
CLN6-209ENST00000569336 POLA1P09884 1462 aaPredicted RBP17.34■□□□□ 0.37
CLN6-209ENST00000569336 FGD5Q6ZNL6 1462 aa17.31■□□□□ 0.36
CLN6-209ENST00000569336 TOP2BQ02880 1626 aa17.29■□□□□ 0.36
CLN6-209ENST00000569336 PBRM1Q86U86 1689 aa17.26■□□□□ 0.35
CLN6-209ENST00000569336 ZNF608Q9ULD9 1512 aaPredicted RBP17.26■□□□□ 0.35
CLN6-209ENST00000569336 CHD1O14646 1710 aa17.24■□□□□ 0.35
CLN6-209ENST00000569336 SYNJ1O43426 1573 aa17.23■□□□□ 0.35
CLN6-209ENST00000569336 SOGA1O94964 1423 aa17.21■□□□□ 0.34
CLN6-209ENST00000569336 WRNQ14191 1432 aaPredicted RBP eCLIP17.21■□□□□ 0.34
CLN6-209ENST00000569336 RAD54L2Q9Y4B4 1467 aa17.19■□□□□ 0.34
CLN6-209ENST00000569336 ABCA5Q8WWZ7 1642 aa17.18■□□□□ 0.34
CLN6-209ENST00000569336 ABCA10Q8WWZ4 1543 aa17.14■□□□□ 0.33
CLN6-209ENST00000569336 AQRO60306 1485 aaKnown RBP eCLIP17.12■□□□□ 0.33
CLN6-209ENST00000569336 OSCARQ8IYS5 282 aa17.1■□□□□ 0.33
CLN6-209ENST00000569336 MAGI1Q96QZ7 1491 aaPredicted RBP17.08■□□□□ 0.32
CLN6-209ENST00000569336 GRIN2BQ13224 1484 aa17.07■□□□□ 0.32
CLN6-209ENST00000569336 GAPVD1Q14C86 1478 aa17.07■□□□□ 0.32
CLN6-209ENST00000569336 TDRD9Q8NDG6 1382 aaKnown RBP17.06■□□□□ 0.32
CLN6-209ENST00000569336 SNAPC4Q5SXM2 1469 aa17.05■□□□□ 0.32
CLN6-209ENST00000569336 AEBP2Q6ZN18 517 aaPredicted RBP17.02■□□□□ 0.32
CLN6-209ENST00000569336 ADAMTS12P58397 1594 aa17.01■□□□□ 0.31
CLN6-209ENST00000569336 ERICH3Q5RHP9 1530 aa16.99■□□□□ 0.31
CLN6-209ENST00000569336 SYNJ2O15056 1496 aa16.99■□□□□ 0.31
CLN6-209ENST00000569336 CUL7Q14999 1698 aa16.94■□□□□ 0.3
CLN6-209ENST00000569336 TRHP20396 242 aaPredicted RBP16.93■□□□□ 0.3
CLN6-209ENST00000569336 RIMBP3CA6NJZ7 1639 aa16.92■□□□□ 0.3
CLN6-209ENST00000569336 RIMBP3BA6NNM3 1639 aa16.92■□□□□ 0.3
CLN6-209ENST00000569336 RIMBP3Q9UFD9 1639 aa16.92■□□□□ 0.3
CLN6-209ENST00000569336 CLASP1Q7Z460 1538 aa16.91■□□□□ 0.3
CLN6-209ENST00000569336 FBLN2P98095 1184 aa16.89■□□□□ 0.29
CLN6-209ENST00000569336 GRIN2AQ12879 1464 aa16.87■□□□□ 0.29
CLN6-209ENST00000569336 CHMP7Q8WUX9 453 aaPredicted RBP16.86■□□□□ 0.29
CLN6-209ENST00000569336 FHAD1B1AJZ9 1412 aa16.86■□□□□ 0.29
CLN6-209ENST00000569336 KIF27Q86VH2 1401 aa16.86■□□□□ 0.29
CLN6-209ENST00000569336 ARHGEF11O15085 1522 aa16.86■□□□□ 0.29
CLN6-209ENST00000569336 CEP170Q5SW79 1584 aa16.82■□□□□ 0.28
CLN6-209ENST00000569336 CYB5RLQ6IPT4 315 aa16.8■□□□□ 0.28
CLN6-209ENST00000569336 SHROOM2Q13796 1616 aa16.78■□□□□ 0.28
CLN6-209ENST00000569336 RUSC2Q8N2Y8 1516 aa16.77■□□□□ 0.28
CLN6-209ENST00000569336 NUP160Q12769 1436 aa16.77■□□□□ 0.27
CLN6-209ENST00000569336 CTTNBP2Q8WZ74 1663 aa16.72■□□□□ 0.27
CLN6-209ENST00000569336 IGF1RP08069 1367 aa16.68■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms