RNA–Protein interactions for RNA: ENST00000569093.1

CCNF-205, Transcript of cyclin F, humanhuman

TSL 2

Gene CCNF, Length 857 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCNF-205ENST00000569093 NISCHQ9Y2I1 1504 aa62.19■■■■■ 7.55
CCNF-205ENST00000569093 CCDC180Q9P1Z9 1646 aa55.43■■■■■ 6.46
CCNF-205ENST00000569093 ABCC9O60706 1549 aa54.84■■■■■ 6.37
CCNF-205ENST00000569093 RB1CC1Q8TDY2 1594 aa52.43■■■■■ 5.98
CCNF-205ENST00000569093 DCAF8L2P0C7V8 631 aa52.32■■■■■ 5.97
CCNF-205ENST00000569093 NACADO15069 1562 aa52.24■■■■■ 5.95
CCNF-205ENST00000569093 MYO15BQ96JP2 1530 aa51.72■■■■■ 5.87
CCNF-205ENST00000569093 ZCCHC6Q5VYS8 1495 aaKnown RBP51.67■■■■■ 5.86
CCNF-205ENST00000569093 DCAF1Q9Y4B6 1507 aa51.35■■■■■ 5.81
CCNF-205ENST00000569093 UNC13AQ9UPW8 1703 aa51.32■■■■■ 5.81
CCNF-205ENST00000569093 PABPN1Q86U42 306 aaKnown RBP eCLIP51.23■■■■■ 5.79
CCNF-205ENST00000569093 BICRAQ9NZM4 1560 aa50.94■■■■■ 5.74
CCNF-205ENST00000569093 DNAJC5BQ9UF47 199 aa50.86■■■■■ 5.73
CCNF-205ENST00000569093 SCRIBQ14160 1630 aa50.65■■■■■ 5.7
CCNF-205ENST00000569093 SHROOM4Q9ULL8 1493 aa50.17■■■■■ 5.62
CCNF-205ENST00000569093 EIF4G1Q04637 1599 aaKnown RBP49.59■■■■■ 5.53
CCNF-205ENST00000569093 CC2D2AQ9P2K1 1620 aa49.54■■■■■ 5.52
CCNF-205ENST00000569093 CECR2Q9BXF3 1484 aa49.28■■■■■ 5.48
CCNF-205ENST00000569093 SMARCA4P51532 1647 aa48.36■■■■■ 5.33
CCNF-205ENST00000569093 NCAPD3P42695 1498 aa48.24■■■■■ 5.31
CCNF-205ENST00000569093 ATAD2BQ9ULI0 1458 aa48.23■■■■■ 5.31
CCNF-205ENST00000569093 BAZ1AQ9NRL2 1556 aaPredicted RBP48.2■■■■■ 5.31
CCNF-205ENST00000569093 SMARCA2P51531 1590 aa48.09■■■■■ 5.29
CCNF-205ENST00000569093 MROH2BQ7Z745 1585 aa47.98■■■■■ 5.27
CCNF-205ENST00000569093 HMGXB3Q12766 1538 aa47.91■■■■■ 5.26
CCNF-205ENST00000569093 PEG3Q9GZU2 1588 aa47.83■■■■■ 5.25
CCNF-205ENST00000569093 BAZ1BQ9UIG0 1483 aaKnown RBP47.78■■■■■ 5.24
CCNF-205ENST00000569093 WIZO95785 1651 aa47.45■■■■■ 5.19
CCNF-205ENST00000569093 NESP48681 1621 aa47.34■■■■■ 5.17
CCNF-205ENST00000569093 RSF1Q96T23 1441 aaPredicted RBP47.24■■■■■ 5.15
CCNF-205ENST00000569093 ERCC6Q03468 1493 aa47.24■■■■■ 5.15
CCNF-205ENST00000569093 LAMC3Q9Y6N6 1575 aa47.02■■■■■ 5.12
CCNF-205ENST00000569093 CUX2O14529 1486 aa46.85■■■■■ 5.09
CCNF-205ENST00000569093 CADPSQ9ULU8 1353 aa46.84■■■■■ 5.09
CCNF-205ENST00000569093 TOP2AP11388 1531 aaKnown RBP46.83■■■■■ 5.09
CCNF-205ENST00000569093 PDS5BQ9NTI5 1447 aa46.73■■■■■ 5.07
CCNF-205ENST00000569093 KIF21AQ7Z4S6 1674 aa46.71■■■■■ 5.07
CCNF-205ENST00000569093 THOC2Q8NI27 1593 aaKnown RBP46.63■■■■■ 5.06
CCNF-205ENST00000569093 CFTRP13569 1480 aa46.44■■■■■ 5.03
CCNF-205ENST00000569093 CCDC88BA6NC98 1476 aa46.36■■■■■ 5.01
CCNF-205ENST00000569093 FANCD2Q9BXW9 1451 aa46.31■■■■■ 5
CCNF-205ENST00000569093 MRC2Q9UBG0 1479 aa46.3■■■■■ 5
CCNF-205ENST00000569093 CEP164Q9UPV0 1460 aa46.26■■■■■ 5
CCNF-205ENST00000569093 WDR62O43379 1518 aa46.14■■■■■ 4.98
CCNF-205ENST00000569093 DNAJC5Q9H3Z4 198 aa46.08■■■■■ 4.97
CCNF-205ENST00000569093 PRDM2Q13029 1718 aa46.02■■■■■ 4.96
CCNF-205ENST00000569093 URB2Q14146 1524 aaKnown RBP45.9■■■■■ 4.94
CCNF-205ENST00000569093 SUPT5HO00267 1087 aaKnown RBP45.8■■■■■ 4.92
CCNF-205ENST00000569093 TOPBP1Q92547 1522 aa45.52■■■■■ 4.88
CCNF-205ENST00000569093 ABCC8Q09428 1581 aa45.41■■■■■ 4.86
CCNF-205ENST00000569093 DNMBPQ6XZF7 1577 aa45.39■■■■■ 4.86
CCNF-205ENST00000569093 IFT140Q96RY7 1462 aa45.3■■■■■ 4.84
CCNF-205ENST00000569093 ZNF608Q9ULD9 1512 aaPredicted RBP45.23■■■■■ 4.83
CCNF-205ENST00000569093 POLA1P09884 1462 aaPredicted RBP45.1■■■■■ 4.81
CCNF-205ENST00000569093 TARBP1Q13395 1621 aaKnown RBP45.06■■■■■ 4.8
CCNF-205ENST00000569093 CUX1P39880 1505 aa45.02■■■■■ 4.8
CCNF-205ENST00000569093 RAD54L2Q9Y4B4 1467 aa44.98■■■■■ 4.79
CCNF-205ENST00000569093 EIF4G3O43432 1585 aaKnown RBP44.97■■■■■ 4.79
CCNF-205ENST00000569093 AQRO60306 1485 aaKnown RBP eCLIP44.93■■■■■ 4.782e-7■■■■□ 20.9
CCNF-205ENST00000569093 FGD5Q6ZNL6 1462 aa44.93■■■■■ 4.78
CCNF-205ENST00000569093 SOGA1O94964 1423 aa44.92■■■■■ 4.78
CCNF-205ENST00000569093 OSCARQ8IYS5 282 aa44.92■■■■■ 4.78
CCNF-205ENST00000569093 TDRD9Q8NDG6 1382 aaKnown RBP44.78■■■■■ 4.76
CCNF-205ENST00000569093 WDR97A6NE52 1622 aa44.54■■■■■ 4.72
CCNF-205ENST00000569093 WRNQ14191 1432 aaPredicted RBP eCLIP44.53■■■■■ 4.72
CCNF-205ENST00000569093 CHD1O14646 1710 aa44.53■■■■■ 4.72
CCNF-205ENST00000569093 FBLN2P98095 1184 aa44.52■■■■■ 4.72
CCNF-205ENST00000569093 SYNJ1O43426 1573 aa44.48■■■■■ 4.71
CCNF-205ENST00000569093 TOP2BQ02880 1626 aa44.46■■■■■ 4.71
CCNF-205ENST00000569093 BIVM-ERCC5R4GMW8 1640 aa44.46■■■■■ 4.71
CCNF-205ENST00000569093 SNAPC4Q5SXM2 1469 aa44.45■■■■■ 4.71
CCNF-205ENST00000569093 TRIM41Q8WV44 630 aa44.43■■■■■ 4.7
CCNF-205ENST00000569093 ABCA10Q8WWZ4 1543 aa44.43■■■■■ 4.7
CCNF-205ENST00000569093 GRIN2BQ13224 1484 aa44.41■■■■■ 4.7
CCNF-205ENST00000569093 GAPVD1Q14C86 1478 aa44.38■■■■■ 4.69
CCNF-205ENST00000569093 MAGI1Q96QZ7 1491 aaPredicted RBP44.31■■■■■ 4.68
CCNF-205ENST00000569093 PBRM1Q86U86 1689 aa44.3■■■■■ 4.68
CCNF-205ENST00000569093 ABCA5Q8WWZ7 1642 aa44.3■■■■■ 4.68
CCNF-205ENST00000569093 CHMP7Q8WUX9 453 aaPredicted RBP44.27■■■■■ 4.68
CCNF-205ENST00000569093 RIMBP3CA6NJZ7 1639 aa44.24■■■■■ 4.67
CCNF-205ENST00000569093 RIMBP3BA6NNM3 1639 aa44.24■■■■■ 4.67
CCNF-205ENST00000569093 RIMBP3Q9UFD9 1639 aa44.24■■■■■ 4.67
CCNF-205ENST00000569093 SYNJ2O15056 1496 aa44.17■■■■■ 4.66
CCNF-205ENST00000569093 ARHGEF11O15085 1522 aa44.17■■■■■ 4.66
CCNF-205ENST00000569093 CLASP1Q7Z460 1538 aa43.99■■■■■ 4.63
CCNF-205ENST00000569093 ADAMTS12P58397 1594 aa43.91■■■■■ 4.62
CCNF-205ENST00000569093 CYB5RLQ6IPT4 315 aa43.88■■■■■ 4.62
CCNF-205ENST00000569093 ERICH3Q5RHP9 1530 aa43.87■■■■■ 4.61
CCNF-205ENST00000569093 GRIN2AQ12879 1464 aa43.85■■■■■ 4.61
CCNF-205ENST00000569093 FHAD1B1AJZ9 1412 aa43.82■■■■■ 4.61
CCNF-205ENST00000569093 ARAP1Q96P48 1450 aa43.79■■■■■ 4.6
CCNF-205ENST00000569093 CEP170Q5SW79 1584 aa43.68■■■■■ 4.58
CCNF-205ENST00000569093 NUP160Q12769 1436 aa43.66■■■■■ 4.58
CCNF-205ENST00000569093 KIF27Q86VH2 1401 aa43.62■■■■■ 4.57
CCNF-205ENST00000569093 IGF1RP08069 1367 aa43.56■■■■■ 4.56
CCNF-205ENST00000569093 ERCC6L2Q5T890 1561 aa43.45■■■■■ 4.55
CCNF-205ENST00000569093 SHROOM2Q13796 1616 aa43.38■■■■■ 4.54
CCNF-205ENST00000569093 CUL7Q14999 1698 aa43.37■■■■■ 4.53
CCNF-205ENST00000569093 JPH4Q96JJ6 628 aa43.29■■■■■ 4.52
CCNF-205ENST00000569093 CARMIL1Q5VZK9 1371 aa43.28■■■■■ 4.52
Retrieved 100 of 20,778 RNA–protein pairs in 174.5 ms