RNA–Protein interactions for RNA: ENST00000569080.1

CDH3-209, Transcript of cadherin 3, humanhuman

TSL 5

Gene CDH3, Length 291 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-209ENST00000569080 NISCHQ9Y2I1 1504 aa19.61■□□□□ 0.73
CDH3-209ENST00000569080 CCDC180Q9P1Z9 1646 aa17.57■□□□□ 0.4
CDH3-209ENST00000569080 ABCC9O60706 1549 aa17.27■□□□□ 0.36
CDH3-209ENST00000569080 RB1CC1Q8TDY2 1594 aa16.55■□□□□ 0.24
CDH3-209ENST00000569080 NACADO15069 1562 aa16.51■□□□□ 0.23
CDH3-209ENST00000569080 MYO15BQ96JP2 1530 aa16.4■□□□□ 0.22
CDH3-209ENST00000569080 ZCCHC6Q5VYS8 1495 aaKnown RBP16.34■□□□□ 0.21
CDH3-209ENST00000569080 UNC13AQ9UPW8 1703 aa16.26■□□□□ 0.19
CDH3-209ENST00000569080 DCAF1Q9Y4B6 1507 aa16.25■□□□□ 0.19
CDH3-209ENST00000569080 DCAF8L2P0C7V8 631 aa16.24■□□□□ 0.19
CDH3-209ENST00000569080 BICRAQ9NZM4 1560 aa16.13■□□□□ 0.17
CDH3-209ENST00000569080 PABPN1Q86U42 306 aaKnown RBP eCLIP16.05■□□□□ 0.16
CDH3-209ENST00000569080 DNAJC5BQ9UF47 199 aa16.01■□□□□ 0.15
CDH3-209ENST00000569080 SCRIBQ14160 1630 aa15.97■□□□□ 0.15
CDH3-209ENST00000569080 SHROOM4Q9ULL8 1493 aa15.93■□□□□ 0.14
CDH3-209ENST00000569080 EIF4G1Q04637 1599 aaKnown RBP15.69■□□□□ 0.1
CDH3-209ENST00000569080 CC2D2AQ9P2K1 1620 aa15.66■□□□□ 0.1
CDH3-209ENST00000569080 CECR2Q9BXF3 1484 aa15.54■□□□□ 0.08
CDH3-209ENST00000569080 SMARCA4P51532 1647 aa15.28■□□□□ 0.04
CDH3-209ENST00000569080 NCAPD3P42695 1498 aa15.23■□□□□ 0.03
CDH3-209ENST00000569080 ATAD2BQ9ULI0 1458 aa15.21■□□□□ 0.03
CDH3-209ENST00000569080 BAZ1AQ9NRL2 1556 aaPredicted RBP15.2■□□□□ 0.02
CDH3-209ENST00000569080 SMARCA2P51531 1590 aa15.18■□□□□ 0.02
CDH3-209ENST00000569080 HMGXB3Q12766 1538 aa15.17■□□□□ 0.02
CDH3-209ENST00000569080 PEG3Q9GZU2 1588 aa15.16■□□□□ 0.02
CDH3-209ENST00000569080 MROH2BQ7Z745 1585 aa15.12■□□□□ 0.01
CDH3-209ENST00000569080 BAZ1BQ9UIG0 1483 aaKnown RBP15.06■□□□□ 0
CDH3-209ENST00000569080 WIZO95785 1651 aa14.94□□□□□ -0.02
CDH3-209ENST00000569080 NESP48681 1621 aa14.92□□□□□ -0.02
CDH3-209ENST00000569080 ERCC6Q03468 1493 aa14.87□□□□□ -0.03
CDH3-209ENST00000569080 LAMC3Q9Y6N6 1575 aa14.86□□□□□ -0.03
CDH3-209ENST00000569080 RSF1Q96T23 1441 aaPredicted RBP14.85□□□□□ -0.03
CDH3-209ENST00000569080 CUX2O14529 1486 aa14.84□□□□□ -0.03
CDH3-209ENST00000569080 THOC2Q8NI27 1593 aaKnown RBP14.81□□□□□ -0.04
CDH3-209ENST00000569080 TOP2AP11388 1531 aaKnown RBP14.78□□□□□ -0.04
CDH3-209ENST00000569080 KIF21AQ7Z4S6 1674 aa14.77□□□□□ -0.04
CDH3-209ENST00000569080 CADPSQ9ULU8 1353 aa14.73□□□□□ -0.05
CDH3-209ENST00000569080 PDS5BQ9NTI5 1447 aa14.71□□□□□ -0.05
CDH3-209ENST00000569080 CFTRP13569 1480 aa14.66□□□□□ -0.06
CDH3-209ENST00000569080 WDR62O43379 1518 aa14.62□□□□□ -0.07
CDH3-209ENST00000569080 MRC2Q9UBG0 1479 aa14.62□□□□□ -0.07
CDH3-209ENST00000569080 FANCD2Q9BXW9 1451 aa14.59□□□□□ -0.07
CDH3-209ENST00000569080 CEP164Q9UPV0 1460 aa14.59□□□□□ -0.07
CDH3-209ENST00000569080 PRDM2Q13029 1718 aa14.58□□□□□ -0.07
CDH3-209ENST00000569080 CCDC88BA6NC98 1476 aa14.57□□□□□ -0.08
CDH3-209ENST00000569080 DNAJC5Q9H3Z4 198 aa14.52□□□□□ -0.09
CDH3-209ENST00000569080 URB2Q14146 1524 aaKnown RBP14.49□□□□□ -0.09
CDH3-209ENST00000569080 TOPBP1Q92547 1522 aa14.36□□□□□ -0.11
CDH3-209ENST00000569080 DNMBPQ6XZF7 1577 aa14.34□□□□□ -0.11
CDH3-209ENST00000569080 IFT140Q96RY7 1462 aa14.29□□□□□ -0.12
CDH3-209ENST00000569080 ABCC8Q09428 1581 aa14.29□□□□□ -0.12
CDH3-209ENST00000569080 ZNF608Q9ULD9 1512 aaPredicted RBP14.26□□□□□ -0.13
CDH3-209ENST00000569080 TARBP1Q13395 1621 aaKnown RBP14.26□□□□□ -0.13
CDH3-209ENST00000569080 EIF4G3O43432 1585 aaKnown RBP14.24□□□□□ -0.13
CDH3-209ENST00000569080 POLA1P09884 1462 aaPredicted RBP14.23□□□□□ -0.13
CDH3-209ENST00000569080 CUX1P39880 1505 aa14.2□□□□□ -0.14
CDH3-209ENST00000569080 SUPT5HO00267 1087 aaKnown RBP14.19□□□□□ -0.14
CDH3-209ENST00000569080 FGD5Q6ZNL6 1462 aa14.16□□□□□ -0.14
CDH3-209ENST00000569080 RAD54L2Q9Y4B4 1467 aa14.14□□□□□ -0.15
CDH3-209ENST00000569080 WDR97A6NE52 1622 aa14.13□□□□□ -0.15
CDH3-209ENST00000569080 AQRO60306 1485 aaKnown RBP eCLIP14.12□□□□□ -0.15
CDH3-209ENST00000569080 SOGA1O94964 1423 aa14.09□□□□□ -0.15
CDH3-209ENST00000569080 CHD1O14646 1710 aa14.08□□□□□ -0.16
CDH3-209ENST00000569080 OSCARQ8IYS5 282 aa14.07□□□□□ -0.16
CDH3-209ENST00000569080 BIVM-ERCC5R4GMW8 1640 aa14.05□□□□□ -0.16
CDH3-209ENST00000569080 TDRD9Q8NDG6 1382 aaKnown RBP14.04□□□□□ -0.16
CDH3-209ENST00000569080 SYNJ1O43426 1573 aa14.04□□□□□ -0.16
CDH3-209ENST00000569080 ABCA5Q8WWZ7 1642 aa14.04□□□□□ -0.16
CDH3-209ENST00000569080 TOP2BQ02880 1626 aa14.03□□□□□ -0.16
CDH3-209ENST00000569080 ABCA10Q8WWZ4 1543 aa14.02□□□□□ -0.16
CDH3-209ENST00000569080 SNAPC4Q5SXM2 1469 aa14.02□□□□□ -0.16
CDH3-209ENST00000569080 PBRM1Q86U86 1689 aa14.01□□□□□ -0.17
CDH3-209ENST00000569080 RIMBP3CA6NJZ7 1639 aa14□□□□□ -0.17
CDH3-209ENST00000569080 RIMBP3BA6NNM3 1639 aa14□□□□□ -0.17
CDH3-209ENST00000569080 RIMBP3Q9UFD9 1639 aa14□□□□□ -0.17
CDH3-209ENST00000569080 MAGI1Q96QZ7 1491 aaPredicted RBP13.99□□□□□ -0.17
CDH3-209ENST00000569080 GRIN2BQ13224 1484 aa13.99□□□□□ -0.17
CDH3-209ENST00000569080 WRNQ14191 1432 aaPredicted RBP eCLIP13.98□□□□□ -0.17
CDH3-209ENST00000569080 ARHGEF11O15085 1522 aa13.97□□□□□ -0.17
CDH3-209ENST00000569080 GAPVD1Q14C86 1478 aa13.96□□□□□ -0.17
CDH3-209ENST00000569080 CLASP1Q7Z460 1538 aa13.95□□□□□ -0.18
CDH3-209ENST00000569080 SYNJ2O15056 1496 aa13.93□□□□□ -0.18
CDH3-209ENST00000569080 TRIM41Q8WV44 630 aa13.9□□□□□ -0.18
CDH3-209ENST00000569080 ADAMTS12P58397 1594 aa13.9□□□□□ -0.18
CDH3-209ENST00000569080 FBLN2P98095 1184 aa13.86□□□□□ -0.19
CDH3-209ENST00000569080 ARAP1Q96P48 1450 aa13.86□□□□□ -0.19
CDH3-209ENST00000569080 ERICH3Q5RHP9 1530 aa13.85□□□□□ -0.19
CDH3-209ENST00000569080 GRIN2AQ12879 1464 aa13.83□□□□□ -0.2
CDH3-209ENST00000569080 CHMP7Q8WUX9 453 aaPredicted RBP13.82□□□□□ -0.2
CDH3-209ENST00000569080 CEP170Q5SW79 1584 aa13.81□□□□□ -0.2
CDH3-209ENST00000569080 FHAD1B1AJZ9 1412 aa13.8□□□□□ -0.2
CDH3-209ENST00000569080 NUP160Q12769 1436 aa13.8□□□□□ -0.2
CDH3-209ENST00000569080 SHROOM2Q13796 1616 aa13.75□□□□□ -0.21
CDH3-209ENST00000569080 ERCC6L2Q5T890 1561 aa13.73□□□□□ -0.21
CDH3-209ENST00000569080 CYB5RLQ6IPT4 315 aa13.72□□□□□ -0.21
CDH3-209ENST00000569080 RUSC2Q8N2Y8 1516 aa13.71□□□□□ -0.21
CDH3-209ENST00000569080 CUL7Q14999 1698 aa13.69□□□□□ -0.22
CDH3-209ENST00000569080 KIF27Q86VH2 1401 aa13.69□□□□□ -0.22
CDH3-209ENST00000569080 IGF1RP08069 1367 aa13.66□□□□□ -0.22
CDH3-209ENST00000569080 KIAA0586Q9BVV6 1533 aa13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 82.3 ms