RNA–Protein interactions for RNA: ENST00000569045.1

CDR2-207, Transcript of cerebellar degeneration related protein 2, humanhuman

TSL 5

Gene CDR2, Length 826 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDR2-207ENST00000569045 NISCHQ9Y2I1 1504 aa41.04■■■■■ 4.16
CDR2-207ENST00000569045 CCDC180Q9P1Z9 1646 aa36.74■■■■□ 3.47
CDR2-207ENST00000569045 ABCC9O60706 1549 aa36.49■■■■□ 3.43
CDR2-207ENST00000569045 RB1CC1Q8TDY2 1594 aa34.89■■■■□ 3.18
CDR2-207ENST00000569045 NACADO15069 1562 aa34.7■■■■□ 3.15
CDR2-207ENST00000569045 DCAF8L2P0C7V8 631 aa34.65■■■■□ 3.14
CDR2-207ENST00000569045 MYO15BQ96JP2 1530 aa34.29■■■■□ 3.08
CDR2-207ENST00000569045 ZCCHC6Q5VYS8 1495 aaKnown RBP34.04■■■■□ 3.04
CDR2-207ENST00000569045 PABPN1Q86U42 306 aaKnown RBP eCLIP34.01■■■■□ 3.03
CDR2-207ENST00000569045 UNC13AQ9UPW8 1703 aa33.99■■■■□ 3.03
CDR2-207ENST00000569045 DCAF1Q9Y4B6 1507 aa33.93■■■■□ 3.02
CDR2-207ENST00000569045 DNAJC5BQ9UF47 199 aa33.92■■■■□ 3.02
CDR2-207ENST00000569045 BICRAQ9NZM4 1560 aa33.74■■■□□ 2.99
CDR2-207ENST00000569045 SCRIBQ14160 1630 aa33.47■■■□□ 2.95
CDR2-207ENST00000569045 SHROOM4Q9ULL8 1493 aa33.45■■■□□ 2.95
CDR2-207ENST00000569045 CC2D2AQ9P2K1 1620 aa32.96■■■□□ 2.87
CDR2-207ENST00000569045 EIF4G1Q04637 1599 aaKnown RBP32.96■■■□□ 2.87
CDR2-207ENST00000569045 CECR2Q9BXF3 1484 aa32.86■■■□□ 2.85
CDR2-207ENST00000569045 NCAPD3P42695 1498 aa32■■■□□ 2.71
CDR2-207ENST00000569045 SMARCA4P51532 1647 aa31.96■■■□□ 2.71
CDR2-207ENST00000569045 ATAD2BQ9ULI0 1458 aa31.92■■■□□ 2.7
CDR2-207ENST00000569045 SMARCA2P51531 1590 aa31.92■■■□□ 2.7
CDR2-207ENST00000569045 BAZ1AQ9NRL2 1556 aaPredicted RBP31.88■■■□□ 2.69
CDR2-207ENST00000569045 HMGXB3Q12766 1538 aa31.8■■■□□ 2.68
CDR2-207ENST00000569045 BAZ1BQ9UIG0 1483 aaKnown RBP31.68■■■□□ 2.66
CDR2-207ENST00000569045 PEG3Q9GZU2 1588 aa31.64■■■□□ 2.65
CDR2-207ENST00000569045 MROH2BQ7Z745 1585 aa31.59■■■□□ 2.65
CDR2-207ENST00000569045 ERCC6Q03468 1493 aa31.57■■■□□ 2.64
CDR2-207ENST00000569045 CUX2O14529 1486 aa31.4■■■□□ 2.62
CDR2-207ENST00000569045 NESP48681 1621 aa31.37■■■□□ 2.61
CDR2-207ENST00000569045 LAMC3Q9Y6N6 1575 aa31.27■■■□□ 2.6
CDR2-207ENST00000569045 WIZO95785 1651 aa31.22■■■□□ 2.59
CDR2-207ENST00000569045 PDS5BQ9NTI5 1447 aa31.14■■■□□ 2.58
CDR2-207ENST00000569045 CADPSQ9ULU8 1353 aa31.07■■■□□ 2.56
CDR2-207ENST00000569045 DNAJC5Q9H3Z4 198 aa31.07■■■□□ 2.56
CDR2-207ENST00000569045 RSF1Q96T23 1441 aaPredicted RBP31.05■■■□□ 2.56
CDR2-207ENST00000569045 THOC2Q8NI27 1593 aaKnown RBP31■■■□□ 2.55
CDR2-207ENST00000569045 KIF21AQ7Z4S6 1674 aa30.99■■■□□ 2.55
CDR2-207ENST00000569045 TOP2AP11388 1531 aaKnown RBP30.89■■■□□ 2.54
CDR2-207ENST00000569045 MRC2Q9UBG0 1479 aa30.8■■■□□ 2.52
CDR2-207ENST00000569045 CFTRP13569 1480 aa30.74■■■□□ 2.51
CDR2-207ENST00000569045 CEP164Q9UPV0 1460 aa30.74■■■□□ 2.51
CDR2-207ENST00000569045 FANCD2Q9BXW9 1451 aa30.7■■■□□ 2.51
CDR2-207ENST00000569045 WDR62O43379 1518 aa30.68■■■□□ 2.5
CDR2-207ENST00000569045 CCDC88BA6NC98 1476 aa30.52■■■□□ 2.48
CDR2-207ENST00000569045 PRDM2Q13029 1718 aa30.45■■■□□ 2.47
CDR2-207ENST00000569045 URB2Q14146 1524 aaKnown RBP30.38■■■□□ 2.45
CDR2-207ENST00000569045 ABCC8Q09428 1581 aa30.18■■■□□ 2.42
CDR2-207ENST00000569045 TOPBP1Q92547 1522 aa30.13■■■□□ 2.41
CDR2-207ENST00000569045 IFT140Q96RY7 1462 aa30.12■■■□□ 2.41
CDR2-207ENST00000569045 DNMBPQ6XZF7 1577 aa30.07■■■□□ 2.4
CDR2-207ENST00000569045 OSCARQ8IYS5 282 aa30.05■■■□□ 2.4
CDR2-207ENST00000569045 ZNF608Q9ULD9 1512 aaPredicted RBP29.96■■■□□ 2.39
CDR2-207ENST00000569045 SUPT5HO00267 1087 aaKnown RBP29.94■■■□□ 2.38
CDR2-207ENST00000569045 TRIM41Q8WV44 630 aa29.86■■■□□ 2.37
CDR2-207ENST00000569045 EIF4G3O43432 1585 aaKnown RBP29.84■■■□□ 2.37
CDR2-207ENST00000569045 POLA1P09884 1462 aaPredicted RBP29.83■■■□□ 2.37
CDR2-207ENST00000569045 TARBP1Q13395 1621 aaKnown RBP29.82■■■□□ 2.36
CDR2-207ENST00000569045 AQRO60306 1485 aaKnown RBP eCLIP29.76■■■□□ 2.352e-6■■■■□ 24.5
CDR2-207ENST00000569045 SOGA1O94964 1423 aa29.76■■■□□ 2.35
CDR2-207ENST00000569045 RAD54L2Q9Y4B4 1467 aa29.71■■■□□ 2.35
CDR2-207ENST00000569045 FGD5Q6ZNL6 1462 aa29.69■■■□□ 2.34
CDR2-207ENST00000569045 CUX1P39880 1505 aa29.67■■■□□ 2.34
CDR2-207ENST00000569045 TDRD9Q8NDG6 1382 aaKnown RBP29.64■■■□□ 2.33
CDR2-207ENST00000569045 FBLN2P98095 1184 aa29.62■■■□□ 2.33
CDR2-207ENST00000569045 WDR97A6NE52 1622 aa29.62■■■□□ 2.33
CDR2-207ENST00000569045 CHD1O14646 1710 aa29.57■■■□□ 2.32
CDR2-207ENST00000569045 RIMBP3CA6NJZ7 1639 aa29.53■■■□□ 2.32
CDR2-207ENST00000569045 RIMBP3BA6NNM3 1639 aa29.53■■■□□ 2.32
CDR2-207ENST00000569045 RIMBP3Q9UFD9 1639 aa29.53■■■□□ 2.32
CDR2-207ENST00000569045 GRIN2BQ13224 1484 aa29.48■■■□□ 2.31
CDR2-207ENST00000569045 SNAPC4Q5SXM2 1469 aa29.48■■■□□ 2.31
CDR2-207ENST00000569045 ARHGEF11O15085 1522 aa29.47■■■□□ 2.31
CDR2-207ENST00000569045 MAGI1Q96QZ7 1491 aaPredicted RBP29.45■■■□□ 2.31
CDR2-207ENST00000569045 CHMP7Q8WUX9 453 aaPredicted RBP29.45■■■□□ 2.31
CDR2-207ENST00000569045 GAPVD1Q14C86 1478 aa29.39■■■□□ 2.3
CDR2-207ENST00000569045 ABCA10Q8WWZ4 1543 aa29.38■■■□□ 2.29
CDR2-207ENST00000569045 WRNQ14191 1432 aaPredicted RBP eCLIP29.37■■■□□ 2.291e-6■■■■■ 58.5
CDR2-207ENST00000569045 SYNJ2O15056 1496 aa29.34■■■□□ 2.29
CDR2-207ENST00000569045 PBRM1Q86U86 1689 aa29.32■■■□□ 2.28
CDR2-207ENST00000569045 SYNJ1O43426 1573 aa29.31■■■□□ 2.28
CDR2-207ENST00000569045 CYB5RLQ6IPT4 315 aa29.3■■■□□ 2.28
CDR2-207ENST00000569045 TOP2BQ02880 1626 aa29.3■■■□□ 2.28
CDR2-207ENST00000569045 ABCA5Q8WWZ7 1642 aa29.28■■■□□ 2.28
CDR2-207ENST00000569045 BIVM-ERCC5R4GMW8 1640 aa29.28■■■□□ 2.28
CDR2-207ENST00000569045 CLASP1Q7Z460 1538 aa29.22■■■□□ 2.27
CDR2-207ENST00000569045 ARAP1Q96P48 1450 aa29.17■■■□□ 2.26
CDR2-207ENST00000569045 ADAMTS12P58397 1594 aa29.06■■■□□ 2.24
CDR2-207ENST00000569045 GRIN2AQ12879 1464 aa29.06■■■□□ 2.24
CDR2-207ENST00000569045 ERICH3Q5RHP9 1530 aa29.04■■■□□ 2.24
CDR2-207ENST00000569045 FHAD1B1AJZ9 1412 aa29.03■■■□□ 2.24
CDR2-207ENST00000569045 TRHP20396 242 aaPredicted RBP28.96■■■□□ 2.23
CDR2-207ENST00000569045 NUP160Q12769 1436 aa28.94■■■□□ 2.22
CDR2-207ENST00000569045 CEP170Q5SW79 1584 aa28.9■■■□□ 2.22
CDR2-207ENST00000569045 KIF27Q86VH2 1401 aa28.8■■■□□ 2.2
CDR2-207ENST00000569045 SHROOM2Q13796 1616 aa28.76■■■□□ 2.2
CDR2-207ENST00000569045 ERCC6L2Q5T890 1561 aa28.75■■■□□ 2.19
CDR2-207ENST00000569045 JPH4Q96JJ6 628 aa28.7■■■□□ 2.18
CDR2-207ENST00000569045 IGF1RP08069 1367 aa28.7■■■□□ 2.18
CDR2-207ENST00000569045 PRG4Q92954 1404 aaPredicted RBP28.68■■■□□ 2.18
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms