RNA–Protein interactions for RNA: ENST00000569036.2

CDH3-208, Transcript of cadherin 3, humanhuman

TSL 4

Gene CDH3, Length 563 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-208ENST00000569036 NISCHQ9Y2I1 1504 aa29.63■■■□□ 2.33
CDH3-208ENST00000569036 ABCC9O60706 1549 aa28.04■■■□□ 2.08
CDH3-208ENST00000569036 DNAJC5BQ9UF47 199 aa27.2■■□□□ 1.94
CDH3-208ENST00000569036 CCDC180Q9P1Z9 1646 aa27.08■■□□□ 1.93
CDH3-208ENST00000569036 RB1CC1Q8TDY2 1594 aa26.24■■□□□ 1.79
CDH3-208ENST00000569036 PABPN1Q86U42 306 aaKnown RBP eCLIP25.89■■□□□ 1.74
CDH3-208ENST00000569036 NACADO15069 1562 aa25.8■■□□□ 1.72
CDH3-208ENST00000569036 UNC13AQ9UPW8 1703 aa25.71■■□□□ 1.71
CDH3-208ENST00000569036 DNAJC5Q9H3Z4 198 aa25.7■■□□□ 1.7
CDH3-208ENST00000569036 BICRAQ9NZM4 1560 aa25.56■■□□□ 1.68
CDH3-208ENST00000569036 CECR2Q9BXF3 1484 aa25.36■■□□□ 1.65
CDH3-208ENST00000569036 DCAF8L2P0C7V8 631 aa25.34■■□□□ 1.65
CDH3-208ENST00000569036 CC2D2AQ9P2K1 1620 aa25.3■■□□□ 1.64
CDH3-208ENST00000569036 MYO15BQ96JP2 1530 aa25.11■■□□□ 1.61
CDH3-208ENST00000569036 SHROOM4Q9ULL8 1493 aa25.08■■□□□ 1.6
CDH3-208ENST00000569036 EIF4G1Q04637 1599 aaKnown RBP24.99■■□□□ 1.59
CDH3-208ENST00000569036 SCRIBQ14160 1630 aa24.6■■□□□ 1.53
CDH3-208ENST00000569036 CUX2O14529 1486 aa24.59■■□□□ 1.53
CDH3-208ENST00000569036 DCAF1Q9Y4B6 1507 aa24.41■■□□□ 1.5
CDH3-208ENST00000569036 ZCCHC6Q5VYS8 1495 aaKnown RBP24.36■■□□□ 1.49
CDH3-208ENST00000569036 ERCC6Q03468 1493 aa24.26■■□□□ 1.47
CDH3-208ENST00000569036 TRIM41Q8WV44 630 aa24.14■■□□□ 1.45
CDH3-208ENST00000569036 THOC2Q8NI27 1593 aaKnown RBP23.82■■□□□ 1.4
CDH3-208ENST00000569036 NCAPD3P42695 1498 aa23.81■■□□□ 1.4
CDH3-208ENST00000569036 NESP48681 1621 aa23.81■■□□□ 1.4
CDH3-208ENST00000569036 ATAD2BQ9ULI0 1458 aa23.62■■□□□ 1.37
CDH3-208ENST00000569036 HMGXB3Q12766 1538 aa23.59■■□□□ 1.37
CDH3-208ENST00000569036 SMARCA2P51531 1590 aa23.57■■□□□ 1.36
CDH3-208ENST00000569036 KIF21AQ7Z4S6 1674 aa23.51■■□□□ 1.35
CDH3-208ENST00000569036 LAMC3Q9Y6N6 1575 aa23.47■■□□□ 1.35
CDH3-208ENST00000569036 BAZ1AQ9NRL2 1556 aaPredicted RBP23.38■■□□□ 1.33
CDH3-208ENST00000569036 SMARCA4P51532 1647 aa23.36■■□□□ 1.33
CDH3-208ENST00000569036 BAZ1BQ9UIG0 1483 aaKnown RBP23.33■■□□□ 1.33
CDH3-208ENST00000569036 PDS5BQ9NTI5 1447 aa23.33■■□□□ 1.32
CDH3-208ENST00000569036 MRC2Q9UBG0 1479 aa23.23■■□□□ 1.31
CDH3-208ENST00000569036 WDR62O43379 1518 aa23.23■■□□□ 1.31
CDH3-208ENST00000569036 OSCARQ8IYS5 282 aa23.22■■□□□ 1.31
CDH3-208ENST00000569036 RIMBP3CA6NJZ7 1639 aa23.14■■□□□ 1.29
CDH3-208ENST00000569036 RIMBP3BA6NNM3 1639 aa23.14■■□□□ 1.29
CDH3-208ENST00000569036 RIMBP3Q9UFD9 1639 aa23.14■■□□□ 1.29
CDH3-208ENST00000569036 PEG3Q9GZU2 1588 aa23.14■■□□□ 1.29
CDH3-208ENST00000569036 CADPSQ9ULU8 1353 aa23.02■■□□□ 1.28
CDH3-208ENST00000569036 ARHGEF11O15085 1522 aa22.94■■□□□ 1.26
CDH3-208ENST00000569036 CEP164Q9UPV0 1460 aa22.92■■□□□ 1.26
CDH3-208ENST00000569036 AEBP2Q6ZN18 517 aaPredicted RBP22.91■■□□□ 1.26
CDH3-208ENST00000569036 MROH2BQ7Z745 1585 aa22.83■■□□□ 1.25
CDH3-208ENST00000569036 TRHP20396 242 aaPredicted RBP22.82■■□□□ 1.24
CDH3-208ENST00000569036 FANCD2Q9BXW9 1451 aa22.8■■□□□ 1.24
CDH3-208ENST00000569036 CYB5RLQ6IPT4 315 aa22.75■■□□□ 1.23
CDH3-208ENST00000569036 URB2Q14146 1524 aaKnown RBP22.7■■□□□ 1.22
CDH3-208ENST00000569036 ARAP1Q96P48 1450 aa22.66■■□□□ 1.22
CDH3-208ENST00000569036 ZNF608Q9ULD9 1512 aaPredicted RBP22.59■■□□□ 1.21
CDH3-208ENST00000569036 CFTRP13569 1480 aa22.58■■□□□ 1.2
CDH3-208ENST00000569036 WIZO95785 1651 aa22.52■■□□□ 1.2
CDH3-208ENST00000569036 IFT140Q96RY7 1462 aa22.49■■□□□ 1.19
CDH3-208ENST00000569036 CHD1O14646 1710 aa22.48■■□□□ 1.19
CDH3-208ENST00000569036 EIF4G3O43432 1585 aaKnown RBP22.44■■□□□ 1.18
CDH3-208ENST00000569036 RSF1Q96T23 1441 aaPredicted RBP22.44■■□□□ 1.18
CDH3-208ENST00000569036 PRDM2Q13029 1718 aa22.34■■□□□ 1.17
CDH3-208ENST00000569036 TOPBP1Q92547 1522 aa22.26■■□□□ 1.15
CDH3-208ENST00000569036 FBLN2P98095 1184 aa22.22■■□□□ 1.15
CDH3-208ENST00000569036 AQRO60306 1485 aaKnown RBP eCLIP22.22■■□□□ 1.15
CDH3-208ENST00000569036 CLASP1Q7Z460 1538 aa22.18■■□□□ 1.14
CDH3-208ENST00000569036 TARBP1Q13395 1621 aaKnown RBP22.17■■□□□ 1.14
CDH3-208ENST00000569036 TOP2AP11388 1531 aaKnown RBP22.16■■□□□ 1.14
CDH3-208ENST00000569036 ILDR1Q86SU0 546 aaPredicted RBP22.13■■□□□ 1.13
CDH3-208ENST00000569036 ABCC8Q09428 1581 aa22.1■■□□□ 1.13
CDH3-208ENST00000569036 DNMBPQ6XZF7 1577 aa22.1■■□□□ 1.13
CDH3-208ENST00000569036 SYNJ1O43426 1573 aa22.04■■□□□ 1.12
CDH3-208ENST00000569036 SNAPC4Q5SXM2 1469 aa21.99■■□□□ 1.11
CDH3-208ENST00000569036 GAPVD1Q14C86 1478 aa21.98■■□□□ 1.11
CDH3-208ENST00000569036 POLA1P09884 1462 aaPredicted RBP21.96■■□□□ 1.11
CDH3-208ENST00000569036 TDRD9Q8NDG6 1382 aaKnown RBP21.91■■□□□ 1.1
CDH3-208ENST00000569036 RAD54L2Q9Y4B4 1467 aa21.9■■□□□ 1.1
CDH3-208ENST00000569036 CHMP7Q8WUX9 453 aaPredicted RBP21.89■■□□□ 1.09
CDH3-208ENST00000569036 CCDC88BA6NC98 1476 aa21.89■■□□□ 1.09
CDH3-208ENST00000569036 MAGI1Q96QZ7 1491 aaPredicted RBP21.87■■□□□ 1.09
CDH3-208ENST00000569036 WDR97A6NE52 1622 aa21.85■■□□□ 1.09
CDH3-208ENST00000569036 KIF13AQ9H1H9 1805 aa21.84■■□□□ 1.09
CDH3-208ENST00000569036 SYNJ2O15056 1496 aa21.82■■□□□ 1.08
CDH3-208ENST00000569036 SOGA1O94964 1423 aa21.8■■□□□ 1.08
CDH3-208ENST00000569036 ERCC6L2Q5T890 1561 aa21.76■■□□□ 1.07
CDH3-208ENST00000569036 GRIN2BQ13224 1484 aa21.76■■□□□ 1.07
CDH3-208ENST00000569036 KDM4FA0A1W2PPD8 638 aa21.74■■□□□ 1.07
CDH3-208ENST00000569036 FGD5Q6ZNL6 1462 aa21.68■■□□□ 1.06
CDH3-208ENST00000569036 PBRM1Q86U86 1689 aa21.66■■□□□ 1.06
CDH3-208ENST00000569036 CEP170Q5SW79 1584 aa21.61■■□□□ 1.05
CDH3-208ENST00000569036 KDM6BO15054 1643 aa21.55■■□□□ 1.04
CDH3-208ENST00000569036 SHROOM2Q13796 1616 aa21.52■■□□□ 1.04
CDH3-208ENST00000569036 CUX1P39880 1505 aa21.52■■□□□ 1.04
CDH3-208ENST00000569036 ABCC10Q5T3U5 1492 aa21.52■■□□□ 1.03
CDH3-208ENST00000569036 FAM69CQ0P6D2 419 aa21.5■■□□□ 1.03
CDH3-208ENST00000569036 GRIN2AQ12879 1464 aa21.5■■□□□ 1.03
CDH3-208ENST00000569036 DIP2BQ9P265 1576 aa21.48■■□□□ 1.03
CDH3-208ENST00000569036 ABCA5Q8WWZ7 1642 aa21.47■■□□□ 1.03
CDH3-208ENST00000569036 NUP160Q12769 1436 aa21.46■■□□□ 1.03
CDH3-208ENST00000569036 MAPKBP1O60336 1514 aa21.42■■□□□ 1.02
CDH3-208ENST00000569036 HECW2Q9P2P5 1572 aa21.42■■□□□ 1.02
CDH3-208ENST00000569036 ADAMTS12P58397 1594 aa21.39■■□□□ 1.01
CDH3-208ENST00000569036 ABCA10Q8WWZ4 1543 aa21.38■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms