RNA–Protein interactions for RNA: ENST00000569007.1

EDC3-215, Transcript of enhancer of mRNA decapping 3, humanhuman

TSL 2

Gene EDC3, Length 379 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EDC3-215ENST00000569007 NISCHQ9Y2I1 1504 aa43.04■■■■■ 4.48
EDC3-215ENST00000569007 CCDC180Q9P1Z9 1646 aa38.34■■■■□ 3.73
EDC3-215ENST00000569007 ABCC9O60706 1549 aa37.86■■■■□ 3.65
EDC3-215ENST00000569007 RB1CC1Q8TDY2 1594 aa36.24■■■■□ 3.39
EDC3-215ENST00000569007 DCAF8L2P0C7V8 631 aa36.13■■■■□ 3.37
EDC3-215ENST00000569007 NACADO15069 1562 aa36.13■■■■□ 3.37
EDC3-215ENST00000569007 MYO15BQ96JP2 1530 aa35.81■■■■□ 3.32
EDC3-215ENST00000569007 ZCCHC6Q5VYS8 1495 aaKnown RBP35.79■■■■□ 3.32
EDC3-215ENST00000569007 DCAF1Q9Y4B6 1507 aa35.57■■■■□ 3.28
EDC3-215ENST00000569007 UNC13AQ9UPW8 1703 aa35.4■■■■□ 3.26
EDC3-215ENST00000569007 PABPN1Q86U42 306 aaKnown RBP eCLIP35.35■■■■□ 3.25
EDC3-215ENST00000569007 BICRAQ9NZM4 1560 aa35.18■■■■□ 3.22
EDC3-215ENST00000569007 DNAJC5BQ9UF47 199 aa35.03■■■■□ 3.2
EDC3-215ENST00000569007 SCRIBQ14160 1630 aa35.02■■■■□ 3.2
EDC3-215ENST00000569007 SHROOM4Q9ULL8 1493 aa34.74■■■■□ 3.15
EDC3-215ENST00000569007 EIF4G1Q04637 1599 aaKnown RBP34.27■■■■□ 3.08
EDC3-215ENST00000569007 CC2D2AQ9P2K1 1620 aa34.19■■■■□ 3.06
EDC3-215ENST00000569007 CECR2Q9BXF3 1484 aa34.03■■■■□ 3.04
EDC3-215ENST00000569007 SMARCA4P51532 1647 aa33.45■■■□□ 2.95
EDC3-215ENST00000569007 NCAPD3P42695 1498 aa33.37■■■□□ 2.93
EDC3-215ENST00000569007 BAZ1AQ9NRL2 1556 aaPredicted RBP33.36■■■□□ 2.93
EDC3-215ENST00000569007 ATAD2BQ9ULI0 1458 aa33.35■■■□□ 2.93
EDC3-215ENST00000569007 SMARCA2P51531 1590 aa33.27■■■□□ 2.92
EDC3-215ENST00000569007 MROH2BQ7Z745 1585 aa33.17■■■□□ 2.9
EDC3-215ENST00000569007 HMGXB3Q12766 1538 aa33.15■■■□□ 2.9
EDC3-215ENST00000569007 PEG3Q9GZU2 1588 aa33.1■■■□□ 2.89
EDC3-215ENST00000569007 BAZ1BQ9UIG0 1483 aaKnown RBP33.05■■■□□ 2.88
EDC3-215ENST00000569007 WIZO95785 1651 aa32.79■■■□□ 2.84
EDC3-215ENST00000569007 RSF1Q96T23 1441 aaPredicted RBP32.7■■■□□ 2.83
EDC3-215ENST00000569007 NESP48681 1621 aa32.68■■■□□ 2.82
EDC3-215ENST00000569007 ERCC6Q03468 1493 aa32.64■■■□□ 2.82
EDC3-215ENST00000569007 LAMC3Q9Y6N6 1575 aa32.5■■■□□ 2.79
EDC3-215ENST00000569007 TOP2AP11388 1531 aaKnown RBP32.42■■■□□ 2.78
EDC3-215ENST00000569007 CADPSQ9ULU8 1353 aa32.38■■■□□ 2.77
EDC3-215ENST00000569007 CUX2O14529 1486 aa32.36■■■□□ 2.77
EDC3-215ENST00000569007 PDS5BQ9NTI5 1447 aa32.32■■■□□ 2.76
EDC3-215ENST00000569007 KIF21AQ7Z4S6 1674 aa32.24■■■□□ 2.75
EDC3-215ENST00000569007 THOC2Q8NI27 1593 aaKnown RBP32.2■■■□□ 2.75
EDC3-215ENST00000569007 CFTRP13569 1480 aa32.13■■■□□ 2.73
EDC3-215ENST00000569007 CCDC88BA6NC98 1476 aa32.07■■■□□ 2.72
EDC3-215ENST00000569007 FANCD2Q9BXW9 1451 aa32.02■■■□□ 2.72
EDC3-215ENST00000569007 MRC2Q9UBG0 1479 aa32.01■■■□□ 2.71
EDC3-215ENST00000569007 CEP164Q9UPV0 1460 aa32■■■□□ 2.71
EDC3-215ENST00000569007 WDR62O43379 1518 aa31.9■■■□□ 2.7
EDC3-215ENST00000569007 PRDM2Q13029 1718 aa31.8■■■□□ 2.68
EDC3-215ENST00000569007 DNAJC5Q9H3Z4 198 aa31.74■■■□□ 2.67
EDC3-215ENST00000569007 URB2Q14146 1524 aaKnown RBP31.72■■■□□ 2.67
EDC3-215ENST00000569007 SUPT5HO00267 1087 aaKnown RBP31.71■■■□□ 2.67
EDC3-215ENST00000569007 TOPBP1Q92547 1522 aa31.47■■■□□ 2.63
EDC3-215ENST00000569007 ABCC8Q09428 1581 aa31.43■■■□□ 2.62
EDC3-215ENST00000569007 DNMBPQ6XZF7 1577 aa31.39■■■□□ 2.62
EDC3-215ENST00000569007 IFT140Q96RY7 1462 aa31.33■■■□□ 2.61
EDC3-215ENST00000569007 ZNF608Q9ULD9 1512 aaPredicted RBP31.24■■■□□ 2.59
EDC3-215ENST00000569007 POLA1P09884 1462 aaPredicted RBP31.19■■■□□ 2.58
EDC3-215ENST00000569007 TARBP1Q13395 1621 aaKnown RBP31.14■■■□□ 2.58
EDC3-215ENST00000569007 CUX1P39880 1505 aa31.14■■■□□ 2.57
EDC3-215ENST00000569007 EIF4G3O43432 1585 aaKnown RBP31.08■■■□□ 2.57
EDC3-215ENST00000569007 FGD5Q6ZNL6 1462 aa31.08■■■□□ 2.57
EDC3-215ENST00000569007 RAD54L2Q9Y4B4 1467 aa31.08■■■□□ 2.57
EDC3-215ENST00000569007 SOGA1O94964 1423 aa31.07■■■□□ 2.56
EDC3-215ENST00000569007 AQRO60306 1485 aaKnown RBP eCLIP31.03■■■□□ 2.56
EDC3-215ENST00000569007 OSCARQ8IYS5 282 aa31■■■□□ 2.55
EDC3-215ENST00000569007 TDRD9Q8NDG6 1382 aaKnown RBP30.94■■■□□ 2.54
EDC3-215ENST00000569007 WDR97A6NE52 1622 aa30.84■■■□□ 2.53
EDC3-215ENST00000569007 WRNQ14191 1432 aaPredicted RBP eCLIP30.83■■■□□ 2.53
EDC3-215ENST00000569007 SYNJ1O43426 1573 aa30.78■■■□□ 2.52
EDC3-215ENST00000569007 TOP2BQ02880 1626 aa30.77■■■□□ 2.52
EDC3-215ENST00000569007 BIVM-ERCC5R4GMW8 1640 aa30.76■■■□□ 2.52
EDC3-215ENST00000569007 ABCA10Q8WWZ4 1543 aa30.74■■■□□ 2.51
EDC3-215ENST00000569007 FBLN2P98095 1184 aa30.73■■■□□ 2.51
EDC3-215ENST00000569007 SNAPC4Q5SXM2 1469 aa30.73■■■□□ 2.51
EDC3-215ENST00000569007 CHD1O14646 1710 aa30.73■■■□□ 2.51
EDC3-215ENST00000569007 GRIN2BQ13224 1484 aa30.72■■■□□ 2.51
EDC3-215ENST00000569007 GAPVD1Q14C86 1478 aa30.7■■■□□ 2.5
EDC3-215ENST00000569007 MAGI1Q96QZ7 1491 aaPredicted RBP30.66■■■□□ 2.5
EDC3-215ENST00000569007 ABCA5Q8WWZ7 1642 aa30.64■■■□□ 2.5
EDC3-215ENST00000569007 PBRM1Q86U86 1689 aa30.61■■■□□ 2.49
EDC3-215ENST00000569007 TRIM41Q8WV44 630 aa30.6■■■□□ 2.49
EDC3-215ENST00000569007 CHMP7Q8WUX9 453 aaPredicted RBP30.59■■■□□ 2.49
EDC3-215ENST00000569007 SYNJ2O15056 1496 aa30.56■■■□□ 2.48
EDC3-215ENST00000569007 RIMBP3CA6NJZ7 1639 aa30.52■■■□□ 2.48
EDC3-215ENST00000569007 RIMBP3BA6NNM3 1639 aa30.52■■■□□ 2.48
EDC3-215ENST00000569007 RIMBP3Q9UFD9 1639 aa30.52■■■□□ 2.48
EDC3-215ENST00000569007 ARHGEF11O15085 1522 aa30.49■■■□□ 2.47
EDC3-215ENST00000569007 CLASP1Q7Z460 1538 aa30.41■■■□□ 2.46
EDC3-215ENST00000569007 ADAMTS12P58397 1594 aa30.37■■■□□ 2.45
EDC3-215ENST00000569007 ERICH3Q5RHP9 1530 aa30.37■■■□□ 2.45
EDC3-215ENST00000569007 GRIN2AQ12879 1464 aa30.33■■■□□ 2.45
EDC3-215ENST00000569007 FHAD1B1AJZ9 1412 aa30.33■■■□□ 2.45
EDC3-215ENST00000569007 CYB5RLQ6IPT4 315 aa30.26■■■□□ 2.43
EDC3-215ENST00000569007 ARAP1Q96P48 1450 aa30.25■■■□□ 2.43
EDC3-215ENST00000569007 KIF27Q86VH2 1401 aa30.22■■■□□ 2.43
EDC3-215ENST00000569007 NUP160Q12769 1436 aa30.2■■■□□ 2.42
EDC3-215ENST00000569007 CEP170Q5SW79 1584 aa30.19■■■□□ 2.42
EDC3-215ENST00000569007 IGF1RP08069 1367 aa30.14■■■□□ 2.41
EDC3-215ENST00000569007 CUL7Q14999 1698 aa30.02■■■□□ 2.4
EDC3-215ENST00000569007 ERCC6L2Q5T890 1561 aa29.99■■■□□ 2.39
EDC3-215ENST00000569007 SHROOM2Q13796 1616 aa29.99■■■□□ 2.39
EDC3-215ENST00000569007 CARMIL1Q5VZK9 1371 aa29.95■■■□□ 2.39
EDC3-215ENST00000569007 RUSC2Q8N2Y8 1516 aa29.93■■■□□ 2.38
Retrieved 100 of 20,778 RNA–protein pairs in 145.9 ms