RNA–Protein interactions for RNA: ENST00000568881.1

NEIL1-220, Transcript of nei like DNA glycosylase 1, humanhuman

TSL 3

Gene NEIL1, Length 587 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEIL1-220ENST00000568881 NISCHQ9Y2I1 1504 aa33.36■■■□□ 2.93
NEIL1-220ENST00000568881 CCDC180Q9P1Z9 1646 aa29.77■■■□□ 2.36
NEIL1-220ENST00000568881 ABCC9O60706 1549 aa29.5■■■□□ 2.31
NEIL1-220ENST00000568881 RB1CC1Q8TDY2 1594 aa28.13■■■□□ 2.09
NEIL1-220ENST00000568881 NACADO15069 1562 aa28.05■■■□□ 2.08
NEIL1-220ENST00000568881 DCAF8L2P0C7V8 631 aa28.02■■■□□ 2.08
NEIL1-220ENST00000568881 MYO15BQ96JP2 1530 aa27.82■■■□□ 2.04
NEIL1-220ENST00000568881 ZCCHC6Q5VYS8 1495 aaKnown RBP27.76■■■□□ 2.03
NEIL1-220ENST00000568881 DCAF1Q9Y4B6 1507 aa27.64■■■□□ 2.02
NEIL1-220ENST00000568881 PABPN1Q86U42 306 aaKnown RBP eCLIP27.56■■■□□ 2
NEIL1-220ENST00000568881 UNC13AQ9UPW8 1703 aa27.55■■■□□ 2
NEIL1-220ENST00000568881 DNAJC5BQ9UF47 199 aa27.42■■□□□ 1.98
NEIL1-220ENST00000568881 BICRAQ9NZM4 1560 aa27.39■■□□□ 1.98
NEIL1-220ENST00000568881 SCRIBQ14160 1630 aa27.23■■□□□ 1.95
NEIL1-220ENST00000568881 SHROOM4Q9ULL8 1493 aa27.03■■□□□ 1.92
NEIL1-220ENST00000568881 EIF4G1Q04637 1599 aaKnown RBP26.63■■□□□ 1.85
NEIL1-220ENST00000568881 CC2D2AQ9P2K1 1620 aa26.61■■□□□ 1.85
NEIL1-220ENST00000568881 CECR2Q9BXF3 1484 aa26.46■■□□□ 1.83
NEIL1-220ENST00000568881 SMARCA4P51532 1647 aa25.96■■□□□ 1.75
NEIL1-220ENST00000568881 BAZ1AQ9NRL2 1556 aaPredicted RBP25.92■■□□□ 1.74
NEIL1-220ENST00000568881 ATAD2BQ9ULI0 1458 aa25.9■■□□□ 1.74
NEIL1-220ENST00000568881 NCAPD3P42695 1498 aa25.85■■□□□ 1.73
NEIL1-220ENST00000568881 SMARCA2P51531 1590 aa25.85■■□□□ 1.73
NEIL1-220ENST00000568881 MROH2BQ7Z745 1585 aa25.8■■□□□ 1.72
NEIL1-220ENST00000568881 HMGXB3Q12766 1538 aa25.73■■□□□ 1.71
NEIL1-220ENST00000568881 PEG3Q9GZU2 1588 aa25.67■■□□□ 1.7
NEIL1-220ENST00000568881 BAZ1BQ9UIG0 1483 aaKnown RBP25.65■■□□□ 1.7
NEIL1-220ENST00000568881 DNAJC5Q9H3Z4 198 aa25.63■■□□□ 1.69
NEIL1-220ENST00000568881 WIZO95785 1651 aa25.49■■□□□ 1.67
NEIL1-220ENST00000568881 NESP48681 1621 aa25.49■■□□□ 1.67
NEIL1-220ENST00000568881 RSF1Q96T23 1441 aaPredicted RBP25.37■■□□□ 1.65
NEIL1-220ENST00000568881 ERCC6Q03468 1493 aa25.33■■□□□ 1.65
NEIL1-220ENST00000568881 LAMC3Q9Y6N6 1575 aa25.23■■□□□ 1.63
NEIL1-220ENST00000568881 TOP2AP11388 1531 aaKnown RBP25.16■■□□□ 1.62
NEIL1-220ENST00000568881 CUX2O14529 1486 aa25.11■■□□□ 1.61
NEIL1-220ENST00000568881 PDS5BQ9NTI5 1447 aa25.11■■□□□ 1.61
NEIL1-220ENST00000568881 CADPSQ9ULU8 1353 aa25.1■■□□□ 1.61
NEIL1-220ENST00000568881 KIF21AQ7Z4S6 1674 aa25.1■■□□□ 1.61
NEIL1-220ENST00000568881 THOC2Q8NI27 1593 aaKnown RBP25.08■■□□□ 1.61
NEIL1-220ENST00000568881 CFTRP13569 1480 aa24.91■■□□□ 1.58
NEIL1-220ENST00000568881 CCDC88BA6NC98 1476 aa24.89■■□□□ 1.57
NEIL1-220ENST00000568881 FANCD2Q9BXW9 1451 aa24.85■■□□□ 1.57
NEIL1-220ENST00000568881 MRC2Q9UBG0 1479 aa24.84■■□□□ 1.57
NEIL1-220ENST00000568881 CEP164Q9UPV0 1460 aa24.83■■□□□ 1.56
NEIL1-220ENST00000568881 WDR62O43379 1518 aa24.79■■□□□ 1.56
NEIL1-220ENST00000568881 PRDM2Q13029 1718 aa24.7■■□□□ 1.54
NEIL1-220ENST00000568881 URB2Q14146 1524 aaKnown RBP24.68■■□□□ 1.54
NEIL1-220ENST00000568881 SUPT5HO00267 1087 aaKnown RBP24.61■■□□□ 1.53
NEIL1-220ENST00000568881 ABCC8Q09428 1581 aa24.47■■□□□ 1.51
NEIL1-220ENST00000568881 TOPBP1Q92547 1522 aa24.44■■□□□ 1.5
NEIL1-220ENST00000568881 ZNF608Q9ULD9 1512 aaPredicted RBP24.35■■□□□ 1.49
NEIL1-220ENST00000568881 DNMBPQ6XZF7 1577 aa24.35■■□□□ 1.49
NEIL1-220ENST00000568881 TRIM41Q8WV44 630 aa24.35■■□□□ 1.49
NEIL1-220ENST00000568881 IFT140Q96RY7 1462 aa24.32■■□□□ 1.48
NEIL1-220ENST00000568881 POLA1P09884 1462 aaPredicted RBP24.23■■□□□ 1.47
NEIL1-220ENST00000568881 CUX1P39880 1505 aa24.2■■□□□ 1.46
NEIL1-220ENST00000568881 RAD54L2Q9Y4B4 1467 aa24.19■■□□□ 1.46
NEIL1-220ENST00000568881 TARBP1Q13395 1621 aaKnown RBP24.19■■□□□ 1.46
NEIL1-220ENST00000568881 EIF4G3O43432 1585 aaKnown RBP24.16■■□□□ 1.46
NEIL1-220ENST00000568881 AQRO60306 1485 aaKnown RBP eCLIP24.14■■□□□ 1.46
NEIL1-220ENST00000568881 FGD5Q6ZNL6 1462 aa24.13■■□□□ 1.45
NEIL1-220ENST00000568881 SOGA1O94964 1423 aa24.09■■□□□ 1.45
NEIL1-220ENST00000568881 TDRD9Q8NDG6 1382 aaKnown RBP24.04■■□□□ 1.44
NEIL1-220ENST00000568881 OSCARQ8IYS5 282 aa24.03■■□□□ 1.44
NEIL1-220ENST00000568881 WDR97A6NE52 1622 aa24.01■■□□□ 1.43
NEIL1-220ENST00000568881 WRNQ14191 1432 aaPredicted RBP eCLIP23.95■■□□□ 1.42
NEIL1-220ENST00000568881 SYNJ1O43426 1573 aa23.92■■□□□ 1.42
NEIL1-220ENST00000568881 CHD1O14646 1710 aa23.9■■□□□ 1.42
NEIL1-220ENST00000568881 SNAPC4Q5SXM2 1469 aa23.89■■□□□ 1.42
NEIL1-220ENST00000568881 TOP2BQ02880 1626 aa23.89■■□□□ 1.42
NEIL1-220ENST00000568881 BIVM-ERCC5R4GMW8 1640 aa23.88■■□□□ 1.41
NEIL1-220ENST00000568881 FBLN2P98095 1184 aa23.85■■□□□ 1.41
NEIL1-220ENST00000568881 ABCA10Q8WWZ4 1543 aa23.84■■□□□ 1.41
NEIL1-220ENST00000568881 GRIN2BQ13224 1484 aa23.84■■□□□ 1.41
NEIL1-220ENST00000568881 GAPVD1Q14C86 1478 aa23.81■■□□□ 1.4
NEIL1-220ENST00000568881 MAGI1Q96QZ7 1491 aaPredicted RBP23.81■■□□□ 1.4
NEIL1-220ENST00000568881 ABCA5Q8WWZ7 1642 aa23.8■■□□□ 1.4
NEIL1-220ENST00000568881 RIMBP3CA6NJZ7 1639 aa23.77■■□□□ 1.4
NEIL1-220ENST00000568881 RIMBP3BA6NNM3 1639 aa23.77■■□□□ 1.4
NEIL1-220ENST00000568881 RIMBP3Q9UFD9 1639 aa23.77■■□□□ 1.4
NEIL1-220ENST00000568881 PBRM1Q86U86 1689 aa23.76■■□□□ 1.39
NEIL1-220ENST00000568881 CHMP7Q8WUX9 453 aaPredicted RBP23.75■■□□□ 1.39
NEIL1-220ENST00000568881 ARHGEF11O15085 1522 aa23.74■■□□□ 1.39
NEIL1-220ENST00000568881 SYNJ2O15056 1496 aa23.7■■□□□ 1.38
NEIL1-220ENST00000568881 CLASP1Q7Z460 1538 aa23.65■■□□□ 1.38
NEIL1-220ENST00000568881 ADAMTS12P58397 1594 aa23.6■■□□□ 1.37
NEIL1-220ENST00000568881 ERICH3Q5RHP9 1530 aa23.59■■□□□ 1.37
NEIL1-220ENST00000568881 ARAP1Q96P48 1450 aa23.57■■□□□ 1.36
NEIL1-220ENST00000568881 FHAD1B1AJZ9 1412 aa23.54■■□□□ 1.36
NEIL1-220ENST00000568881 GRIN2AQ12879 1464 aa23.53■■□□□ 1.36
NEIL1-220ENST00000568881 CYB5RLQ6IPT4 315 aa23.52■■□□□ 1.36
NEIL1-220ENST00000568881 KIF27Q86VH2 1401 aa23.5■■□□□ 1.35
NEIL1-220ENST00000568881 CEP170Q5SW79 1584 aa23.49■■□□□ 1.35
NEIL1-220ENST00000568881 NUP160Q12769 1436 aa23.44■■□□□ 1.34
NEIL1-220ENST00000568881 ERCC6L2Q5T890 1561 aa23.43■■□□□ 1.34
NEIL1-220ENST00000568881 CUL7Q14999 1698 aa23.36■■□□□ 1.33
NEIL1-220ENST00000568881 IGF1RP08069 1367 aa23.36■■□□□ 1.33
NEIL1-220ENST00000568881 SHROOM2Q13796 1616 aa23.29■■□□□ 1.32
NEIL1-220ENST00000568881 RUSC2Q8N2Y8 1516 aa23.27■■□□□ 1.32
NEIL1-220ENST00000568881 CARMIL1Q5VZK9 1371 aa23.25■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 124.3 ms