RNA–Protein interactions for RNA: ENST00000568676.5

HERPUD1-215, Transcript of homocysteine inducible ER protein with ubiquitin like domain 1, humanhuman

TSL 2

Gene HERPUD1, Length 571 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD1-215ENST00000568676 NISCHQ9Y2I1 1504 aa39.79■■■■□ 3.96
HERPUD1-215ENST00000568676 ABCC9O60706 1549 aa35.93■■■■□ 3.34
HERPUD1-215ENST00000568676 CCDC180Q9P1Z9 1646 aa35.85■■■■□ 3.33
HERPUD1-215ENST00000568676 RB1CC1Q8TDY2 1594 aa34.23■■■■□ 3.07
HERPUD1-215ENST00000568676 NACADO15069 1562 aa33.96■■■■□ 3.03
HERPUD1-215ENST00000568676 DNAJC5BQ9UF47 199 aa33.84■■■■□ 3.01
HERPUD1-215ENST00000568676 DCAF8L2P0C7V8 631 aa33.57■■■□□ 2.96
HERPUD1-215ENST00000568676 MYO15BQ96JP2 1530 aa33.49■■■□□ 2.95
HERPUD1-215ENST00000568676 PABPN1Q86U42 306 aaKnown RBP eCLIP33.38■■■□□ 2.93
HERPUD1-215ENST00000568676 UNC13AQ9UPW8 1703 aa33.31■■■□□ 2.92
HERPUD1-215ENST00000568676 BICRAQ9NZM4 1560 aa33.15■■■□□ 2.9
HERPUD1-215ENST00000568676 DCAF1Q9Y4B6 1507 aa32.95■■■□□ 2.87
HERPUD1-215ENST00000568676 ZCCHC6Q5VYS8 1495 aaKnown RBP32.93■■■□□ 2.86
HERPUD1-215ENST00000568676 SHROOM4Q9ULL8 1493 aa32.89■■■□□ 2.86
HERPUD1-215ENST00000568676 SCRIBQ14160 1630 aa32.52■■■□□ 2.8
HERPUD1-215ENST00000568676 CC2D2AQ9P2K1 1620 aa32.48■■■□□ 2.79
HERPUD1-215ENST00000568676 CECR2Q9BXF3 1484 aa32.45■■■□□ 2.79
HERPUD1-215ENST00000568676 EIF4G1Q04637 1599 aaKnown RBP32.39■■■□□ 2.78
HERPUD1-215ENST00000568676 DNAJC5Q9H3Z4 198 aa31.36■■■□□ 2.61
HERPUD1-215ENST00000568676 NCAPD3P42695 1498 aa31.34■■■□□ 2.61
HERPUD1-215ENST00000568676 CUX2O14529 1486 aa31.2■■■□□ 2.58
HERPUD1-215ENST00000568676 ATAD2BQ9ULI0 1458 aa31.17■■■□□ 2.58
HERPUD1-215ENST00000568676 SMARCA2P51531 1590 aa31.13■■■□□ 2.57
HERPUD1-215ENST00000568676 ERCC6Q03468 1493 aa31.11■■■□□ 2.57
HERPUD1-215ENST00000568676 HMGXB3Q12766 1538 aa31.09■■■□□ 2.57
HERPUD1-215ENST00000568676 SMARCA4P51532 1647 aa31.06■■■□□ 2.56
HERPUD1-215ENST00000568676 BAZ1AQ9NRL2 1556 aaPredicted RBP30.94■■■□□ 2.54
HERPUD1-215ENST00000568676 BAZ1BQ9UIG0 1483 aaKnown RBP30.86■■■□□ 2.53
HERPUD1-215ENST00000568676 PEG3Q9GZU2 1588 aa30.84■■■□□ 2.53
HERPUD1-215ENST00000568676 NESP48681 1621 aa30.77■■■□□ 2.52
HERPUD1-215ENST00000568676 LAMC3Q9Y6N6 1575 aa30.68■■■□□ 2.5
HERPUD1-215ENST00000568676 MROH2BQ7Z745 1585 aa30.59■■■□□ 2.49
HERPUD1-215ENST00000568676 THOC2Q8NI27 1593 aaKnown RBP30.58■■■□□ 2.49
HERPUD1-215ENST00000568676 PDS5BQ9NTI5 1447 aa30.52■■■□□ 2.48
HERPUD1-215ENST00000568676 KIF21AQ7Z4S6 1674 aa30.39■■■□□ 2.46
HERPUD1-215ENST00000568676 CADPSQ9ULU8 1353 aa30.36■■■□□ 2.45
HERPUD1-215ENST00000568676 MRC2Q9UBG0 1479 aa30.22■■■□□ 2.43
HERPUD1-215ENST00000568676 WIZO95785 1651 aa30.19■■■□□ 2.42
HERPUD1-215ENST00000568676 WDR62O43379 1518 aa30.16■■■□□ 2.42
HERPUD1-215ENST00000568676 CEP164Q9UPV0 1460 aa30.06■■■□□ 2.4
HERPUD1-215ENST00000568676 FANCD2Q9BXW9 1451 aa29.99■■■□□ 2.39
HERPUD1-215ENST00000568676 CFTRP13569 1480 aa29.97■■■□□ 2.39
HERPUD1-215ENST00000568676 RSF1Q96T23 1441 aaPredicted RBP29.91■■■□□ 2.38
HERPUD1-215ENST00000568676 TOP2AP11388 1531 aaKnown RBP29.88■■■□□ 2.37
HERPUD1-215ENST00000568676 TRIM41Q8WV44 630 aa29.8■■■□□ 2.36
HERPUD1-215ENST00000568676 URB2Q14146 1524 aaKnown RBP29.71■■■□□ 2.35
HERPUD1-215ENST00000568676 OSCARQ8IYS5 282 aa29.7■■■□□ 2.35
HERPUD1-215ENST00000568676 PRDM2Q13029 1718 aa29.62■■■□□ 2.33
HERPUD1-215ENST00000568676 CCDC88BA6NC98 1476 aa29.51■■■□□ 2.31
HERPUD1-215ENST00000568676 IFT140Q96RY7 1462 aa29.49■■■□□ 2.31
HERPUD1-215ENST00000568676 ABCC8Q09428 1581 aa29.43■■■□□ 2.3
HERPUD1-215ENST00000568676 TOPBP1Q92547 1522 aa29.39■■■□□ 2.3
HERPUD1-215ENST00000568676 ZNF608Q9ULD9 1512 aaPredicted RBP29.35■■■□□ 2.29
HERPUD1-215ENST00000568676 DNMBPQ6XZF7 1577 aa29.29■■■□□ 2.28
HERPUD1-215ENST00000568676 RIMBP3CA6NJZ7 1639 aa29.27■■■□□ 2.28
HERPUD1-215ENST00000568676 RIMBP3BA6NNM3 1639 aa29.27■■■□□ 2.28
HERPUD1-215ENST00000568676 RIMBP3Q9UFD9 1639 aa29.27■■■□□ 2.28
HERPUD1-215ENST00000568676 EIF4G3O43432 1585 aaKnown RBP29.23■■■□□ 2.27
HERPUD1-215ENST00000568676 ARHGEF11O15085 1522 aa29.18■■■□□ 2.26
HERPUD1-215ENST00000568676 TARBP1Q13395 1621 aaKnown RBP29.13■■■□□ 2.25
HERPUD1-215ENST00000568676 AQRO60306 1485 aaKnown RBP eCLIP29.08■■■□□ 2.253e-9■■■■■ 59.9
HERPUD1-215ENST00000568676 POLA1P09884 1462 aaPredicted RBP29.07■■■□□ 2.24
HERPUD1-215ENST00000568676 CHD1O14646 1710 aa29■■■□□ 2.23
HERPUD1-215ENST00000568676 WDR97A6NE52 1622 aa28.96■■■□□ 2.23
HERPUD1-215ENST00000568676 SOGA1O94964 1423 aa28.95■■■□□ 2.23
HERPUD1-215ENST00000568676 CYB5RLQ6IPT4 315 aa28.95■■■□□ 2.22
HERPUD1-215ENST00000568676 FBLN2P98095 1184 aa28.93■■■□□ 2.22
HERPUD1-215ENST00000568676 RAD54L2Q9Y4B4 1467 aa28.91■■■□□ 2.22
HERPUD1-215ENST00000568676 TDRD9Q8NDG6 1382 aaKnown RBP28.87■■■□□ 2.21
HERPUD1-215ENST00000568676 ARAP1Q96P48 1450 aa28.85■■■□□ 2.21
HERPUD1-215ENST00000568676 FGD5Q6ZNL6 1462 aa28.85■■■□□ 2.21
HERPUD1-215ENST00000568676 SNAPC4Q5SXM2 1469 aa28.8■■■□□ 2.2
HERPUD1-215ENST00000568676 MAGI1Q96QZ7 1491 aaPredicted RBP28.8■■■□□ 2.2
HERPUD1-215ENST00000568676 CUX1P39880 1505 aa28.77■■■□□ 2.2
HERPUD1-215ENST00000568676 GRIN2BQ13224 1484 aa28.75■■■□□ 2.19
HERPUD1-215ENST00000568676 CHMP7Q8WUX9 453 aaPredicted RBP28.75■■■□□ 2.19
HERPUD1-215ENST00000568676 SYNJ1O43426 1573 aa28.74■■■□□ 2.19
HERPUD1-215ENST00000568676 CLASP1Q7Z460 1538 aa28.74■■■□□ 2.19
HERPUD1-215ENST00000568676 TRHP20396 242 aaPredicted RBP28.71■■■□□ 2.19
HERPUD1-215ENST00000568676 SYNJ2O15056 1496 aa28.69■■■□□ 2.18
HERPUD1-215ENST00000568676 GAPVD1Q14C86 1478 aa28.59■■■□□ 2.17
HERPUD1-215ENST00000568676 ABCA10Q8WWZ4 1543 aa28.56■■■□□ 2.16
HERPUD1-215ENST00000568676 PBRM1Q86U86 1689 aa28.55■■■□□ 2.16
HERPUD1-215ENST00000568676 ABCA5Q8WWZ7 1642 aa28.51■■■□□ 2.15
HERPUD1-215ENST00000568676 WRNQ14191 1432 aaPredicted RBP eCLIP28.42■■■□□ 2.14
HERPUD1-215ENST00000568676 GRIN2AQ12879 1464 aa28.36■■■□□ 2.13
HERPUD1-215ENST00000568676 SUPT5HO00267 1087 aaKnown RBP28.35■■■□□ 2.13
HERPUD1-215ENST00000568676 TOP2BQ02880 1626 aa28.3■■■□□ 2.12
HERPUD1-215ENST00000568676 BIVM-ERCC5R4GMW8 1640 aa28.29■■■□□ 2.12
HERPUD1-215ENST00000568676 ADAMTS12P58397 1594 aa28.29■■■□□ 2.12
HERPUD1-215ENST00000568676 NUP160Q12769 1436 aa28.29■■■□□ 2.12
HERPUD1-215ENST00000568676 FHAD1B1AJZ9 1412 aa28.26■■■□□ 2.11
HERPUD1-215ENST00000568676 CEP170Q5SW79 1584 aa28.22■■■□□ 2.11
HERPUD1-215ENST00000568676 ERICH3Q5RHP9 1530 aa28.22■■■□□ 2.11
HERPUD1-215ENST00000568676 SHROOM2Q13796 1616 aa28.18■■■□□ 2.1
HERPUD1-215ENST00000568676 ERCC6L2Q5T890 1561 aa28.17■■■□□ 2.1
HERPUD1-215ENST00000568676 AEBP2Q6ZN18 517 aaPredicted RBP28.07■■■□□ 2.08
HERPUD1-215ENST00000568676 PRG4Q92954 1404 aaPredicted RBP28.01■■■□□ 2.07
HERPUD1-215ENST00000568676 JPH4Q96JJ6 628 aa27.98■■■□□ 2.07
HERPUD1-215ENST00000568676 RUSC2Q8N2Y8 1516 aa27.91■■■□□ 2.06
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms