RNA–Protein interactions for RNA: ENST00000568406.1

C1orf228-220, Transcript of Uncharacterized protein C1orf228, humanhuman

TSL 2

Gene C1orf228, Length 726 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C1orf228-220ENST00000568406 NISCHQ9Y2I1 1504 aa37.97■■■■□ 3.67
C1orf228-220ENST00000568406 ABCC9O60706 1549 aa34.09■■■■□ 3.05
C1orf228-220ENST00000568406 CCDC180Q9P1Z9 1646 aa33.96■■■■□ 3.03
C1orf228-220ENST00000568406 RB1CC1Q8TDY2 1594 aa32.4■■■□□ 2.78
C1orf228-220ENST00000568406 DCAF8L2P0C7V8 631 aa32.19■■■□□ 2.74
C1orf228-220ENST00000568406 NACADO15069 1562 aa32.18■■■□□ 2.74
C1orf228-220ENST00000568406 DNAJC5BQ9UF47 199 aa32.06■■■□□ 2.72
C1orf228-220ENST00000568406 PABPN1Q86U42 306 aaKnown RBP eCLIP31.82■■■□□ 2.68
C1orf228-220ENST00000568406 MYO15BQ96JP2 1530 aa31.74■■■□□ 2.67
C1orf228-220ENST00000568406 UNC13AQ9UPW8 1703 aa31.54■■■□□ 2.64
C1orf228-220ENST00000568406 BICRAQ9NZM4 1560 aa31.44■■■□□ 2.62
C1orf228-220ENST00000568406 ZCCHC6Q5VYS8 1495 aaKnown RBP31.43■■■□□ 2.62
C1orf228-220ENST00000568406 DCAF1Q9Y4B6 1507 aa31.33■■■□□ 2.61
C1orf228-220ENST00000568406 SHROOM4Q9ULL8 1493 aa31.02■■■□□ 2.56
C1orf228-220ENST00000568406 SCRIBQ14160 1630 aa31.01■■■□□ 2.55
C1orf228-220ENST00000568406 CC2D2AQ9P2K1 1620 aa30.75■■■□□ 2.51
C1orf228-220ENST00000568406 CECR2Q9BXF3 1484 aa30.72■■■□□ 2.51
C1orf228-220ENST00000568406 EIF4G1Q04637 1599 aaKnown RBP30.68■■■□□ 2.5
C1orf228-220ENST00000568406 NCAPD3P42695 1498 aa29.76■■■□□ 2.35
C1orf228-220ENST00000568406 ATAD2BQ9ULI0 1458 aa29.67■■■□□ 2.34
C1orf228-220ENST00000568406 SMARCA4P51532 1647 aa29.56■■■□□ 2.32
C1orf228-220ENST00000568406 SMARCA2P51531 1590 aa29.55■■■□□ 2.32
C1orf228-220ENST00000568406 HMGXB3Q12766 1538 aa29.47■■■□□ 2.31
C1orf228-220ENST00000568406 BAZ1AQ9NRL2 1556 aaPredicted RBP29.44■■■□□ 2.3
C1orf228-220ENST00000568406 ERCC6Q03468 1493 aa29.44■■■□□ 2.3
C1orf228-220ENST00000568406 DNAJC5Q9H3Z4 198 aa29.44■■■□□ 2.3
C1orf228-220ENST00000568406 BAZ1BQ9UIG0 1483 aaKnown RBP29.36■■■□□ 2.29
C1orf228-220ENST00000568406 CUX2O14529 1486 aa29.36■■■□□ 2.29
C1orf228-220ENST00000568406 PEG3Q9GZU2 1588 aa29.28■■■□□ 2.28
C1orf228-220ENST00000568406 NESP48681 1621 aa29.27■■■□□ 2.28
C1orf228-220ENST00000568406 MROH2BQ7Z745 1585 aa29.26■■■□□ 2.27
C1orf228-220ENST00000568406 LAMC3Q9Y6N6 1575 aa29.02■■■□□ 2.24
C1orf228-220ENST00000568406 PDS5BQ9NTI5 1447 aa28.94■■■□□ 2.22
C1orf228-220ENST00000568406 THOC2Q8NI27 1593 aaKnown RBP28.9■■■□□ 2.22
C1orf228-220ENST00000568406 CADPSQ9ULU8 1353 aa28.88■■■□□ 2.21
C1orf228-220ENST00000568406 WIZO95785 1651 aa28.86■■■□□ 2.21
C1orf228-220ENST00000568406 KIF21AQ7Z4S6 1674 aa28.8■■■□□ 2.2
C1orf228-220ENST00000568406 RSF1Q96T23 1441 aaPredicted RBP28.69■■■□□ 2.18
C1orf228-220ENST00000568406 MRC2Q9UBG0 1479 aa28.65■■■□□ 2.18
C1orf228-220ENST00000568406 WDR62O43379 1518 aa28.54■■■□□ 2.16
C1orf228-220ENST00000568406 CEP164Q9UPV0 1460 aa28.53■■■□□ 2.16
C1orf228-220ENST00000568406 CFTRP13569 1480 aa28.52■■■□□ 2.16
C1orf228-220ENST00000568406 FANCD2Q9BXW9 1451 aa28.52■■■□□ 2.16
C1orf228-220ENST00000568406 TOP2AP11388 1531 aaKnown RBP28.51■■■□□ 2.15
C1orf228-220ENST00000568406 URB2Q14146 1524 aaKnown RBP28.28■■■□□ 2.12
C1orf228-220ENST00000568406 CCDC88BA6NC98 1476 aa28.25■■■□□ 2.11
C1orf228-220ENST00000568406 TRIM41Q8WV44 630 aa28.16■■■□□ 2.1
C1orf228-220ENST00000568406 OSCARQ8IYS5 282 aa28.12■■■□□ 2.09
C1orf228-220ENST00000568406 PRDM2Q13029 1718 aa28.05■■■□□ 2.08
C1orf228-220ENST00000568406 IFT140Q96RY7 1462 aa27.98■■■□□ 2.07
C1orf228-220ENST00000568406 TOPBP1Q92547 1522 aa27.97■■■□□ 2.07
C1orf228-220ENST00000568406 ZNF608Q9ULD9 1512 aaPredicted RBP27.94■■■□□ 2.06
C1orf228-220ENST00000568406 ABCC8Q09428 1581 aa27.91■■■□□ 2.06
C1orf228-220ENST00000568406 DNMBPQ6XZF7 1577 aa27.83■■■□□ 2.05
C1orf228-220ENST00000568406 AQRO60306 1485 aaKnown RBP eCLIP27.72■■■□□ 2.03
C1orf228-220ENST00000568406 EIF4G3O43432 1585 aaKnown RBP27.71■■■□□ 2.03
C1orf228-220ENST00000568406 POLA1P09884 1462 aaPredicted RBP27.69■■■□□ 2.02
C1orf228-220ENST00000568406 TARBP1Q13395 1621 aaKnown RBP27.68■■■□□ 2.02
C1orf228-220ENST00000568406 RIMBP3CA6NJZ7 1639 aa27.62■■■□□ 2.01
C1orf228-220ENST00000568406 RIMBP3BA6NNM3 1639 aa27.62■■■□□ 2.01
C1orf228-220ENST00000568406 RIMBP3Q9UFD9 1639 aa27.62■■■□□ 2.01
C1orf228-220ENST00000568406 SOGA1O94964 1423 aa27.61■■■□□ 2.01
C1orf228-220ENST00000568406 RAD54L2Q9Y4B4 1467 aa27.61■■■□□ 2.01
C1orf228-220ENST00000568406 FBLN2P98095 1184 aa27.6■■■□□ 2.01
C1orf228-220ENST00000568406 TDRD9Q8NDG6 1382 aaKnown RBP27.57■■■□□ 2
C1orf228-220ENST00000568406 ARHGEF11O15085 1522 aa27.57■■■□□ 2
C1orf228-220ENST00000568406 FGD5Q6ZNL6 1462 aa27.51■■□□□ 1.99
C1orf228-220ENST00000568406 SUPT5HO00267 1087 aaKnown RBP27.5■■□□□ 1.99
C1orf228-220ENST00000568406 CYB5RLQ6IPT4 315 aa27.48■■□□□ 1.99
C1orf228-220ENST00000568406 CUX1P39880 1505 aa27.47■■□□□ 1.99
C1orf228-220ENST00000568406 CHD1O14646 1710 aa27.47■■□□□ 1.99
C1orf228-220ENST00000568406 SNAPC4Q5SXM2 1469 aa27.39■■□□□ 1.98
C1orf228-220ENST00000568406 CHMP7Q8WUX9 453 aaPredicted RBP27.39■■□□□ 1.98
C1orf228-220ENST00000568406 WDR97A6NE52 1622 aa27.37■■□□□ 1.97
C1orf228-220ENST00000568406 GRIN2BQ13224 1484 aa27.34■■□□□ 1.97
C1orf228-220ENST00000568406 MAGI1Q96QZ7 1491 aaPredicted RBP27.32■■□□□ 1.96
C1orf228-220ENST00000568406 ARAP1Q96P48 1450 aa27.3■■□□□ 1.96
C1orf228-220ENST00000568406 SYNJ2O15056 1496 aa27.24■■□□□ 1.95
C1orf228-220ENST00000568406 GAPVD1Q14C86 1478 aa27.24■■□□□ 1.95
C1orf228-220ENST00000568406 CLASP1Q7Z460 1538 aa27.21■■□□□ 1.95
C1orf228-220ENST00000568406 SYNJ1O43426 1573 aa27.2■■□□□ 1.94
C1orf228-220ENST00000568406 ABCA10Q8WWZ4 1543 aa27.2■■□□□ 1.94
C1orf228-220ENST00000568406 TRHP20396 242 aaPredicted RBP27.17■■□□□ 1.94
C1orf228-220ENST00000568406 WRNQ14191 1432 aaPredicted RBP eCLIP27.13■■□□□ 1.93
C1orf228-220ENST00000568406 ABCA5Q8WWZ7 1642 aa27.1■■□□□ 1.93
C1orf228-220ENST00000568406 PBRM1Q86U86 1689 aa27.1■■□□□ 1.93
C1orf228-220ENST00000568406 TOP2BQ02880 1626 aa27.01■■□□□ 1.91
C1orf228-220ENST00000568406 BIVM-ERCC5R4GMW8 1640 aa26.97■■□□□ 1.91
C1orf228-220ENST00000568406 GRIN2AQ12879 1464 aa26.96■■□□□ 1.91
C1orf228-220ENST00000568406 FHAD1B1AJZ9 1412 aa26.9■■□□□ 1.9
C1orf228-220ENST00000568406 ADAMTS12P58397 1594 aa26.9■■□□□ 1.9
C1orf228-220ENST00000568406 NUP160Q12769 1436 aa26.88■■□□□ 1.89
C1orf228-220ENST00000568406 ERICH3Q5RHP9 1530 aa26.84■■□□□ 1.89
C1orf228-220ENST00000568406 CEP170Q5SW79 1584 aa26.84■■□□□ 1.89
C1orf228-220ENST00000568406 ERCC6L2Q5T890 1561 aa26.8■■□□□ 1.88
C1orf228-220ENST00000568406 SHROOM2Q13796 1616 aa26.7■■□□□ 1.86
C1orf228-220ENST00000568406 JPH4Q96JJ6 628 aa26.69■■□□□ 1.86
C1orf228-220ENST00000568406 PRG4Q92954 1404 aaPredicted RBP26.66■■□□□ 1.86
C1orf228-220ENST00000568406 IGF1RP08069 1367 aa26.58■■□□□ 1.85
C1orf228-220ENST00000568406 KIF27Q86VH2 1401 aa26.55■■□□□ 1.84
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms