RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 NISCHQ9Y2I1 1504 aa36.73■■■■□ 3.47
VPS39-210ENST00000568357 ABCC9O60706 1549 aa33.15■■■□□ 2.9
VPS39-210ENST00000568357 CCDC180Q9P1Z9 1646 aa32.59■■■□□ 2.81
VPS39-210ENST00000568357 DNAJC5BQ9UF47 199 aa31.72■■■□□ 2.67
VPS39-210ENST00000568357 RB1CC1Q8TDY2 1594 aa31.2■■■□□ 2.58
VPS39-210ENST00000568357 DCAF8L2P0C7V8 631 aa30.89■■■□□ 2.54
VPS39-210ENST00000568357 NACADO15069 1562 aa30.78■■■□□ 2.52
VPS39-210ENST00000568357 PABPN1Q86U42 306 aaKnown RBP eCLIP30.68■■■□□ 2.5
VPS39-210ENST00000568357 UNC13AQ9UPW8 1703 aa30.66■■■□□ 2.5
VPS39-210ENST00000568357 ZCCHC6Q5VYS8 1495 aaKnown RBP30.53■■■□□ 2.48
VPS39-210ENST00000568357 MYO15BQ96JP2 1530 aa30.52■■■□□ 2.48
VPS39-210ENST00000568357 BICRAQ9NZM4 1560 aa30.39■■■□□ 2.46
VPS39-210ENST00000568357 DCAF1Q9Y4B6 1507 aa30.33■■■□□ 2.45
VPS39-210ENST00000568357 CC2D2AQ9P2K1 1620 aa29.93■■■□□ 2.38
VPS39-210ENST00000568357 CECR2Q9BXF3 1484 aa29.91■■■□□ 2.38
VPS39-210ENST00000568357 SCRIBQ14160 1630 aa29.81■■■□□ 2.36
VPS39-210ENST00000568357 SHROOM4Q9ULL8 1493 aa29.79■■■□□ 2.36
VPS39-210ENST00000568357 EIF4G1Q04637 1599 aaKnown RBP29.68■■■□□ 2.34
VPS39-210ENST00000568357 DNAJC5Q9H3Z4 198 aa29.6■■■□□ 2.33
VPS39-210ENST00000568357 CUX2O14529 1486 aa28.82■■■□□ 2.2
VPS39-210ENST00000568357 ERCC6Q03468 1493 aa28.62■■■□□ 2.17
VPS39-210ENST00000568357 SMARCA4P51532 1647 aa28.48■■■□□ 2.15
VPS39-210ENST00000568357 NCAPD3P42695 1498 aa28.46■■■□□ 2.15
VPS39-210ENST00000568357 ATAD2BQ9ULI0 1458 aa28.45■■■□□ 2.14
VPS39-210ENST00000568357 BAZ1AQ9NRL2 1556 aaPredicted RBP28.43■■■□□ 2.14
VPS39-210ENST00000568357 SMARCA2P51531 1590 aa28.33■■■□□ 2.12
VPS39-210ENST00000568357 MROH2BQ7Z745 1585 aa28.33■■■□□ 2.12
VPS39-210ENST00000568357 NESP48681 1621 aa28.29■■■□□ 2.12
VPS39-210ENST00000568357 HMGXB3Q12766 1538 aa28.21■■■□□ 2.11
VPS39-210ENST00000568357 THOC2Q8NI27 1593 aaKnown RBP28.2■■■□□ 2.11
VPS39-210ENST00000568357 PEG3Q9GZU2 1588 aa28.2■■■□□ 2.11
VPS39-210ENST00000568357 BAZ1BQ9UIG0 1483 aaKnown RBP28.16■■■□□ 2.1
VPS39-210ENST00000568357 TRIM41Q8WV44 630 aa28.04■■■□□ 2.08
VPS39-210ENST00000568357 KIF21AQ7Z4S6 1674 aa27.97■■■□□ 2.07
VPS39-210ENST00000568357 RSF1Q96T23 1441 aaPredicted RBP27.97■■■□□ 2.07
VPS39-210ENST00000568357 WIZO95785 1651 aa27.97■■■□□ 2.07
VPS39-210ENST00000568357 LAMC3Q9Y6N6 1575 aa27.93■■■□□ 2.06
VPS39-210ENST00000568357 PDS5BQ9NTI5 1447 aa27.7■■■□□ 2.03
VPS39-210ENST00000568357 TOP2AP11388 1531 aaKnown RBP27.64■■■□□ 2.02
VPS39-210ENST00000568357 CADPSQ9ULU8 1353 aa27.63■■■□□ 2.01
VPS39-210ENST00000568357 MRC2Q9UBG0 1479 aa27.59■■■□□ 2.01
VPS39-210ENST00000568357 WDR62O43379 1518 aa27.59■■■□□ 2.01
VPS39-210ENST00000568357 CCDC88BA6NC98 1476 aa27.41■■□□□ 1.98
VPS39-210ENST00000568357 CFTRP13569 1480 aa27.41■■□□□ 1.98
VPS39-210ENST00000568357 CEP164Q9UPV0 1460 aa27.32■■□□□ 1.96
VPS39-210ENST00000568357 FANCD2Q9BXW9 1451 aa27.28■■□□□ 1.96
VPS39-210ENST00000568357 OSCARQ8IYS5 282 aa27.28■■□□□ 1.96
VPS39-210ENST00000568357 RIMBP3CA6NJZ7 1639 aa27.21■■□□□ 1.95
VPS39-210ENST00000568357 RIMBP3BA6NNM3 1639 aa27.21■■□□□ 1.95
VPS39-210ENST00000568357 RIMBP3Q9UFD9 1639 aa27.21■■□□□ 1.95
VPS39-210ENST00000568357 SUPT5HO00267 1087 aaKnown RBP27.21■■□□□ 1.95
VPS39-210ENST00000568357 URB2Q14146 1524 aaKnown RBP27.09■■□□□ 1.93
VPS39-210ENST00000568357 ARHGEF11O15085 1522 aa27■■□□□ 1.91
VPS39-210ENST00000568357 PRDM2Q13029 1718 aa26.98■■□□□ 1.91
VPS39-210ENST00000568357 ZNF608Q9ULD9 1512 aaPredicted RBP26.89■■□□□ 1.89
VPS39-210ENST00000568357 TOPBP1Q92547 1522 aa26.82■■□□□ 1.88
VPS39-210ENST00000568357 IFT140Q96RY7 1462 aa26.78■■□□□ 1.88
VPS39-210ENST00000568357 ABCC8Q09428 1581 aa26.77■■□□□ 1.88
VPS39-210ENST00000568357 EIF4G3O43432 1585 aaKnown RBP26.75■■□□□ 1.87
VPS39-210ENST00000568357 CYB5RLQ6IPT4 315 aa26.74■■□□□ 1.87
VPS39-210ENST00000568357 CHD1O14646 1710 aa26.73■■□□□ 1.87
VPS39-210ENST00000568357 DNMBPQ6XZF7 1577 aa26.72■■□□□ 1.87
VPS39-210ENST00000568357 ARAP1Q96P48 1450 aa26.7■■□□□ 1.87
VPS39-210ENST00000568357 TRHP20396 242 aaPredicted RBP26.68■■□□□ 1.86
VPS39-210ENST00000568357 POLA1P09884 1462 aaPredicted RBP26.59■■□□□ 1.85
VPS39-210ENST00000568357 CUX1P39880 1505 aa26.57■■□□□ 1.84
VPS39-210ENST00000568357 RAD54L2Q9Y4B4 1467 aa26.53■■□□□ 1.84
VPS39-210ENST00000568357 SOGA1O94964 1423 aa26.52■■□□□ 1.84
VPS39-210ENST00000568357 TARBP1Q13395 1621 aaKnown RBP26.51■■□□□ 1.83
VPS39-210ENST00000568357 FGD5Q6ZNL6 1462 aa26.5■■□□□ 1.83
VPS39-210ENST00000568357 AQRO60306 1485 aaKnown RBP eCLIP26.49■■□□□ 1.831e-6■■■■■ 34
VPS39-210ENST00000568357 TDRD9Q8NDG6 1382 aaKnown RBP26.43■■□□□ 1.82
VPS39-210ENST00000568357 AEBP2Q6ZN18 517 aaPredicted RBP26.42■■□□□ 1.82
VPS39-210ENST00000568357 FBLN2P98095 1184 aa26.4■■□□□ 1.82
VPS39-210ENST00000568357 WRNQ14191 1432 aaPredicted RBP eCLIP26.35■■□□□ 1.81
VPS39-210ENST00000568357 CLASP1Q7Z460 1538 aa26.34■■□□□ 1.81
VPS39-210ENST00000568357 SYNJ1O43426 1573 aa26.26■■□□□ 1.79
VPS39-210ENST00000568357 TOP2BQ02880 1626 aa26.25■■□□□ 1.79
VPS39-210ENST00000568357 SNAPC4Q5SXM2 1469 aa26.24■■□□□ 1.79
VPS39-210ENST00000568357 ABCA10Q8WWZ4 1543 aa26.23■■□□□ 1.79
VPS39-210ENST00000568357 WDR97A6NE52 1622 aa26.21■■□□□ 1.79
VPS39-210ENST00000568357 BIVM-ERCC5R4GMW8 1640 aa26.21■■□□□ 1.79
VPS39-210ENST00000568357 GRIN2BQ13224 1484 aa26.17■■□□□ 1.78
VPS39-210ENST00000568357 GAPVD1Q14C86 1478 aa26.17■■□□□ 1.78
VPS39-210ENST00000568357 CHMP7Q8WUX9 453 aaPredicted RBP26.1■■□□□ 1.77
VPS39-210ENST00000568357 MAGI1Q96QZ7 1491 aaPredicted RBP26.1■■□□□ 1.77
VPS39-210ENST00000568357 ABCA5Q8WWZ7 1642 aa26.08■■□□□ 1.77
VPS39-210ENST00000568357 SYNJ2O15056 1496 aa26.02■■□□□ 1.76
VPS39-210ENST00000568357 PBRM1Q86U86 1689 aa26■■□□□ 1.75
VPS39-210ENST00000568357 ERCC6L2Q5T890 1561 aa25.91■■□□□ 1.74
VPS39-210ENST00000568357 ERICH3Q5RHP9 1530 aa25.88■■□□□ 1.73
VPS39-210ENST00000568357 FHAD1B1AJZ9 1412 aa25.86■■□□□ 1.73
VPS39-210ENST00000568357 ADAMTS12P58397 1594 aa25.84■■□□□ 1.73
VPS39-210ENST00000568357 GRIN2AQ12879 1464 aa25.84■■□□□ 1.73
VPS39-210ENST00000568357 KIF13AQ9H1H9 1805 aa25.81■■□□□ 1.72
VPS39-210ENST00000568357 KIF27Q86VH2 1401 aa25.8■■□□□ 1.72
VPS39-210ENST00000568357 IGF1RP08069 1367 aa25.8■■□□□ 1.72
VPS39-210ENST00000568357 CEP170Q5SW79 1584 aa25.75■■□□□ 1.71
VPS39-210ENST00000568357 NUP160Q12769 1436 aa25.74■■□□□ 1.71
VPS39-210ENST00000568357 SHROOM2Q13796 1616 aa25.68■■□□□ 1.7
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms