RNA–Protein interactions for RNA: ENST00000568340.5

CDH11-214, Transcript of cadherin 11, humanhuman

TSL 4

Gene CDH11, Length 514 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH11-214ENST00000568340 NISCHQ9Y2I1 1504 aa24.53■■□□□ 1.52
CDH11-214ENST00000568340 CCDC180Q9P1Z9 1646 aa21.57■■□□□ 1.04
CDH11-214ENST00000568340 ZCCHC6Q5VYS8 1495 aaKnown RBP20.62■□□□□ 0.89
CDH11-214ENST00000568340 ABCC9O60706 1549 aa20.47■□□□□ 0.87
CDH11-214ENST00000568340 DCAF1Q9Y4B6 1507 aa20.37■□□□□ 0.85
CDH11-214ENST00000568340 MYO15BQ96JP2 1530 aa20.26■□□□□ 0.83
CDH11-214ENST00000568340 NACADO15069 1562 aa20.1■□□□□ 0.81
CDH11-214ENST00000568340 RB1CC1Q8TDY2 1594 aa19.94■□□□□ 0.78
CDH11-214ENST00000568340 DCAF8L2P0C7V8 631 aa19.91■□□□□ 0.78
CDH11-214ENST00000568340 SCRIBQ14160 1630 aa19.67■□□□□ 0.74
CDH11-214ENST00000568340 UNC13AQ9UPW8 1703 aa19.58■□□□□ 0.72
CDH11-214ENST00000568340 SHROOM4Q9ULL8 1493 aa19.57■□□□□ 0.72
CDH11-214ENST00000568340 BICRAQ9NZM4 1560 aa19.48■□□□□ 0.71
CDH11-214ENST00000568340 PABPN1Q86U42 306 aaKnown RBP eCLIP19.16■□□□□ 0.66
CDH11-214ENST00000568340 DNAJC5BQ9UF47 199 aa19.14■□□□□ 0.65
CDH11-214ENST00000568340 CECR2Q9BXF3 1484 aa19.06■□□□□ 0.64
CDH11-214ENST00000568340 MROH2BQ7Z745 1585 aa18.93■□□□□ 0.62
CDH11-214ENST00000568340 BAZ1AQ9NRL2 1556 aaPredicted RBP18.93■□□□□ 0.62
CDH11-214ENST00000568340 SMARCA4P51532 1647 aa18.92■□□□□ 0.62
CDH11-214ENST00000568340 RSF1Q96T23 1441 aaPredicted RBP18.91■□□□□ 0.62
CDH11-214ENST00000568340 EIF4G1Q04637 1599 aaKnown RBP18.84■□□□□ 0.61
CDH11-214ENST00000568340 PEG3Q9GZU2 1588 aa18.79■□□□□ 0.6
CDH11-214ENST00000568340 WIZO95785 1651 aa18.72■□□□□ 0.59
CDH11-214ENST00000568340 ATAD2BQ9ULI0 1458 aa18.66■□□□□ 0.58
CDH11-214ENST00000568340 SMARCA2P51531 1590 aa18.62■□□□□ 0.57
CDH11-214ENST00000568340 SUPT5HO00267 1087 aaKnown RBP18.6■□□□□ 0.57
CDH11-214ENST00000568340 CC2D2AQ9P2K1 1620 aa18.59■□□□□ 0.57
CDH11-214ENST00000568340 TOP2AP11388 1531 aaKnown RBP18.59■□□□□ 0.57
CDH11-214ENST00000568340 NCAPD3P42695 1498 aa18.58■□□□□ 0.56
CDH11-214ENST00000568340 HMGXB3Q12766 1538 aa18.55■□□□□ 0.56
CDH11-214ENST00000568340 BAZ1BQ9UIG0 1483 aaKnown RBP18.47■□□□□ 0.55
CDH11-214ENST00000568340 CCDC88BA6NC98 1476 aa18.33■□□□□ 0.52
CDH11-214ENST00000568340 CFTRP13569 1480 aa18.08■□□□□ 0.49
CDH11-214ENST00000568340 CADPSQ9ULU8 1353 aa18■□□□□ 0.47
CDH11-214ENST00000568340 LAMC3Q9Y6N6 1575 aa17.96■□□□□ 0.46
CDH11-214ENST00000568340 PRDM2Q13029 1718 aa17.95■□□□□ 0.46
CDH11-214ENST00000568340 NESP48681 1621 aa17.94■□□□□ 0.46
CDH11-214ENST00000568340 ABCC8Q09428 1581 aa17.83■□□□□ 0.45
CDH11-214ENST00000568340 CHIC1Q5VXU3 224 aa17.82■□□□□ 0.44
CDH11-214ENST00000568340 FANCD2Q9BXW9 1451 aa17.8■□□□□ 0.44
CDH11-214ENST00000568340 DNAJC5Q9H3Z4 198 aa17.79■□□□□ 0.44
CDH11-214ENST00000568340 SYNJ1O43426 1573 aa17.76■□□□□ 0.43
CDH11-214ENST00000568340 WRNQ14191 1432 aaPredicted RBP eCLIP17.74■□□□□ 0.43
CDH11-214ENST00000568340 KIF21AQ7Z4S6 1674 aa17.74■□□□□ 0.43
CDH11-214ENST00000568340 PDS5BQ9NTI5 1447 aa17.73■□□□□ 0.43
CDH11-214ENST00000568340 CUX1P39880 1505 aa17.73■□□□□ 0.43
CDH11-214ENST00000568340 BIVM-ERCC5R4GMW8 1640 aa17.72■□□□□ 0.43
CDH11-214ENST00000568340 CEP164Q9UPV0 1460 aa17.7■□□□□ 0.42
CDH11-214ENST00000568340 TOP2BQ02880 1626 aa17.7■□□□□ 0.42
CDH11-214ENST00000568340 URB2Q14146 1524 aaKnown RBP17.66■□□□□ 0.42
CDH11-214ENST00000568340 DNMBPQ6XZF7 1577 aa17.64■□□□□ 0.41
CDH11-214ENST00000568340 TOPBP1Q92547 1522 aa17.62■□□□□ 0.41
CDH11-214ENST00000568340 THOC2Q8NI27 1593 aaKnown RBP17.62■□□□□ 0.41
CDH11-214ENST00000568340 MRC2Q9UBG0 1479 aa17.6■□□□□ 0.41
CDH11-214ENST00000568340 WDR62O43379 1518 aa17.59■□□□□ 0.41
CDH11-214ENST00000568340 TRIM41Q8WV44 630 aa17.54■□□□□ 0.4
CDH11-214ENST00000568340 FGD5Q6ZNL6 1462 aa17.53■□□□□ 0.4
CDH11-214ENST00000568340 POLA1P09884 1462 aaPredicted RBP17.52■□□□□ 0.4
CDH11-214ENST00000568340 ERCC6Q03468 1493 aa17.5■□□□□ 0.39
CDH11-214ENST00000568340 WDR97A6NE52 1622 aa17.46■□□□□ 0.39
CDH11-214ENST00000568340 CUX2O14529 1486 aa17.45■□□□□ 0.38
CDH11-214ENST00000568340 SOGA1O94964 1423 aa17.43■□□□□ 0.38
CDH11-214ENST00000568340 TARBP1Q13395 1621 aaKnown RBP17.43■□□□□ 0.38
CDH11-214ENST00000568340 ABCA10Q8WWZ4 1543 aa17.42■□□□□ 0.38
CDH11-214ENST00000568340 RAD54L2Q9Y4B4 1467 aa17.4■□□□□ 0.38
CDH11-214ENST00000568340 RUSC2Q8N2Y8 1516 aa17.4■□□□□ 0.38
CDH11-214ENST00000568340 EEA1Q15075 1411 aa17.35■□□□□ 0.37
CDH11-214ENST00000568340 ABCA5Q8WWZ7 1642 aa17.34■□□□□ 0.37
CDH11-214ENST00000568340 IFT140Q96RY7 1462 aa17.32■□□□□ 0.36
CDH11-214ENST00000568340 KIF27Q86VH2 1401 aa17.29■□□□□ 0.36
CDH11-214ENST00000568340 ZNF608Q9ULD9 1512 aaPredicted RBP17.26■□□□□ 0.35
CDH11-214ENST00000568340 PRXQ9BXM0 1461 aa17.23■□□□□ 0.35
CDH11-214ENST00000568340 EIF4G3O43432 1585 aaKnown RBP17.21■□□□□ 0.35
CDH11-214ENST00000568340 KIF21BO75037 1637 aa17.21■□□□□ 0.35
CDH11-214ENST00000568340 IGF1RP08069 1367 aa17.2■□□□□ 0.34
CDH11-214ENST00000568340 GAPVD1Q14C86 1478 aa17.19■□□□□ 0.34
CDH11-214ENST00000568340 TDRD9Q8NDG6 1382 aaKnown RBP17.19■□□□□ 0.34
CDH11-214ENST00000568340 ERICH3Q5RHP9 1530 aa17.19■□□□□ 0.34
CDH11-214ENST00000568340 CSRNP3Q8WYN3 585 aa17.17■□□□□ 0.34
CDH11-214ENST00000568340 AQRO60306 1485 aaKnown RBP eCLIP17.17■□□□□ 0.34
CDH11-214ENST00000568340 PBRM1Q86U86 1689 aa17.16■□□□□ 0.34
CDH11-214ENST00000568340 FAM9AQ8IZU1 332 aaPredicted RBP17.15■□□□□ 0.34
CDH11-214ENST00000568340 CUL7Q14999 1698 aa17.13■□□□□ 0.33
CDH11-214ENST00000568340 GRIN2BQ13224 1484 aa17.12■□□□□ 0.33
CDH11-214ENST00000568340 ADAMTS12P58397 1594 aa17.12■□□□□ 0.33
CDH11-214ENST00000568340 RAPGEF2Q9Y4G8 1499 aa17.12■□□□□ 0.33
CDH11-214ENST00000568340 GOLGA3Q08378 1498 aa17.08■□□□□ 0.32
CDH11-214ENST00000568340 SNAPC4Q5SXM2 1469 aa17.05■□□□□ 0.32
CDH11-214ENST00000568340 CARMIL1Q5VZK9 1371 aa17.05■□□□□ 0.32
CDH11-214ENST00000568340 MAGI1Q96QZ7 1491 aaPredicted RBP17.05■□□□□ 0.32
CDH11-214ENST00000568340 LOC105371045A0A1W2PR82 267 aa17.03■□□□□ 0.32
CDH11-214ENST00000568340 FHAD1B1AJZ9 1412 aa17.03■□□□□ 0.32
CDH11-214ENST00000568340 TNIKQ9UKE5 1360 aa16.98■□□□□ 0.31
CDH11-214ENST00000568340 SYNJ2O15056 1496 aa16.96■□□□□ 0.31
CDH11-214ENST00000568340 GRIN2AQ12879 1464 aa16.94■□□□□ 0.3
CDH11-214ENST00000568340 NUP160Q12769 1436 aa16.89■□□□□ 0.29
CDH11-214ENST00000568340 CEP170Q5SW79 1584 aa16.88■□□□□ 0.29
CDH11-214ENST00000568340 CTTNBP2Q8WZ74 1663 aa16.87■□□□□ 0.29
CDH11-214ENST00000568340 CEP162Q5TB80 1403 aa16.86■□□□□ 0.29
CDH11-214ENST00000568340 CHD1O14646 1710 aa16.84■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms