RNA–Protein interactions for RNA: ENST00000568301.1

COMMD4-223, Transcript of COMM domain containing 4, human

TSL 5

Gene COMMD4, Length 666 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
COMMD4-223	ENST00000568301	NISCH	Q9Y2I1	1504 aa		37.82	■■■■□ 3.64
COMMD4-223	ENST00000568301	ABCC9	O60706	1549 aa		34.39	■■■■□ 3.1
COMMD4-223	ENST00000568301	CCDC180	Q9P1Z9	1646 aa		34.02	■■■■□ 3.04
COMMD4-223	ENST00000568301	DNAJC5B	Q9UF47	199 aa		32.59	■■■□□ 2.81
COMMD4-223	ENST00000568301	RB1CC1	Q8TDY2	1594 aa		32.54	■■■□□ 2.8
COMMD4-223	ENST00000568301	NACAD	O15069	1562 aa		32.25	■■■□□ 2.75
COMMD4-223	ENST00000568301	DCAF8L2	P0C7V8	631 aa		32.12	■■■□□ 2.73
COMMD4-223	ENST00000568301	PABPN1	Q86U42	306 aa	Known RBP eCLIP	32.01	■■■□□ 2.71
COMMD4-223	ENST00000568301	UNC13A	Q9UPW8	1703 aa		31.86	■■■□□ 2.69
COMMD4-223	ENST00000568301	MYO15B	Q96JP2	1530 aa		31.69	■■■□□ 2.66
COMMD4-223	ENST00000568301	BICRA	Q9NZM4	1560 aa		31.66	■■■□□ 2.66
COMMD4-223	ENST00000568301	ZCCHC6	Q5VYS8	1495 aa	Known RBP	31.27	■■■□□ 2.6
COMMD4-223	ENST00000568301	DCAF1	Q9Y4B6	1507 aa		31.24	■■■□□ 2.59
COMMD4-223	ENST00000568301	SHROOM4	Q9ULL8	1493 aa		31.1	■■■□□ 2.57
COMMD4-223	ENST00000568301	CC2D2A	Q9P2K1	1620 aa		31.04	■■■□□ 2.56
COMMD4-223	ENST00000568301	SCRIB	Q14160	1630 aa		31.03	■■■□□ 2.56
COMMD4-223	ENST00000568301	CECR2	Q9BXF3	1484 aa		30.99	■■■□□ 2.55
COMMD4-223	ENST00000568301	EIF4G1	Q04637	1599 aa	Known RBP	30.88	■■■□□ 2.53
COMMD4-223	ENST00000568301	DNAJC5	Q9H3Z4	198 aa		30.1	■■■□□ 2.41
COMMD4-223	ENST00000568301	NCAPD3	P42695	1498 aa		29.8	■■■□□ 2.36
COMMD4-223	ENST00000568301	CUX2	O14529	1486 aa		29.71	■■■□□ 2.35
COMMD4-223	ENST00000568301	ERCC6	Q03468	1493 aa		29.68	■■■□□ 2.34
COMMD4-223	ENST00000568301	ATAD2B	Q9ULI0	1458 aa		29.68	■■■□□ 2.34
COMMD4-223	ENST00000568301	SMARCA4	P51532	1647 aa		29.56	■■■□□ 2.32
COMMD4-223	ENST00000568301	SMARCA2	P51531	1590 aa		29.54	■■■□□ 2.32
COMMD4-223	ENST00000568301	HMGXB3	Q12766	1538 aa		29.52	■■■□□ 2.32
COMMD4-223	ENST00000568301	NES	P48681	1621 aa		29.48	■■■□□ 2.31
COMMD4-223	ENST00000568301	BAZ1B	Q9UIG0	1483 aa	Known RBP	29.36	■■■□□ 2.29
COMMD4-223	ENST00000568301	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	29.35	■■■□□ 2.29
COMMD4-223	ENST00000568301	PEG3	Q9GZU2	1588 aa		29.26	■■■□□ 2.27
COMMD4-223	ENST00000568301	THOC2	Q8NI27	1593 aa	Known RBP	29.19	■■■□□ 2.26
COMMD4-223	ENST00000568301	MROH2B	Q7Z745	1585 aa		29.16	■■■□□ 2.26
COMMD4-223	ENST00000568301	LAMC3	Q9Y6N6	1575 aa		29.16	■■■□□ 2.26
COMMD4-223	ENST00000568301	KIF21A	Q7Z4S6	1674 aa		29.05	■■■□□ 2.24
COMMD4-223	ENST00000568301	PDS5B	Q9NTI5	1447 aa		29.02	■■■□□ 2.24
COMMD4-223	ENST00000568301	CADPS	Q9ULU8	1353 aa		28.89	■■■□□ 2.22
COMMD4-223	ENST00000568301	WIZ	O95785	1651 aa		28.8	■■■□□ 2.2
COMMD4-223	ENST00000568301	MRC2	Q9UBG0	1479 aa		28.78	■■■□□ 2.2
COMMD4-223	ENST00000568301	WDR62	O43379	1518 aa		28.71	■■■□□ 2.19
COMMD4-223	ENST00000568301	TRIM41	Q8WV44	630 aa		28.67	■■■□□ 2.18
COMMD4-223	ENST00000568301	CEP164	Q9UPV0	1460 aa		28.6	■■■□□ 2.17
COMMD4-223	ENST00000568301	FANCD2	Q9BXW9	1451 aa		28.56	■■■□□ 2.16
COMMD4-223	ENST00000568301	CFTR	P13569	1480 aa		28.49	■■■□□ 2.15
COMMD4-223	ENST00000568301	RSF1	Q96T23	1441 aa	Predicted RBP	28.48	■■■□□ 2.15
COMMD4-223	ENST00000568301	TOP2A	P11388	1531 aa	Known RBP	28.37	■■■□□ 2.13
COMMD4-223	ENST00000568301	URB2	Q14146	1524 aa	Known RBP	28.36	■■■□□ 2.13
COMMD4-223	ENST00000568301	OSCAR	Q8IYS5	282 aa		28.35	■■■□□ 2.13
COMMD4-223	ENST00000568301	PRDM2	Q13029	1718 aa		28.15	■■■□□ 2.1
COMMD4-223	ENST00000568301	CCDC88B	A6NC98	1476 aa		28.09	■■■□□ 2.09
COMMD4-223	ENST00000568301	ZNF608	Q9ULD9	1512 aa	Predicted RBP	28.08	■■■□□ 2.08
COMMD4-223	ENST00000568301	IFT140	Q96RY7	1462 aa		28.03	■■■□□ 2.08
COMMD4-223	ENST00000568301	RIMBP3C	A6NJZ7	1639 aa		28.01	■■■□□ 2.07
COMMD4-223	ENST00000568301	RIMBP3B	A6NNM3	1639 aa		28.01	■■■□□ 2.07
COMMD4-223	ENST00000568301	RIMBP3	Q9UFD9	1639 aa		28.01	■■■□□ 2.07
COMMD4-223	ENST00000568301	TOPBP1	Q92547	1522 aa		27.98	■■■□□ 2.07
COMMD4-223	ENST00000568301	ARHGEF11	O15085	1522 aa		27.88	■■■□□ 2.05
COMMD4-223	ENST00000568301	EIF4G3	O43432	1585 aa	Known RBP	27.86	■■■□□ 2.05
COMMD4-223	ENST00000568301	ABCC8	Q09428	1581 aa		27.86	■■■□□ 2.05
COMMD4-223	ENST00000568301	DNMBP	Q6XZF7	1577 aa		27.84	■■■□□ 2.05
COMMD4-223	ENST00000568301	AQR	O60306	1485 aa	Known RBP eCLIP	27.79	■■■□□ 2.04
COMMD4-223	ENST00000568301	TARBP1	Q13395	1621 aa	Known RBP	27.76	■■■□□ 2.03
COMMD4-223	ENST00000568301	CYB5RL	Q6IPT4	315 aa		27.74	■■■□□ 2.03
COMMD4-223	ENST00000568301	CHD1	O14646	1710 aa		27.72	■■■□□ 2.03
COMMD4-223	ENST00000568301	POLA1	P09884	1462 aa	Predicted RBP	27.69	■■■□□ 2.02
COMMD4-223	ENST00000568301	FBLN2	P98095	1184 aa		27.67	■■■□□ 2.02
COMMD4-223	ENST00000568301	RAD54L2	Q9Y4B4	1467 aa		27.62	■■■□□ 2.01
COMMD4-223	ENST00000568301	ARAP1	Q96P48	1450 aa		27.6	■■■□□ 2.01
COMMD4-223	ENST00000568301	TDRD9	Q8NDG6	1382 aa	Known RBP	27.57	■■■□□ 2
COMMD4-223	ENST00000568301	SOGA1	O94964	1423 aa		27.57	■■■□□ 2
COMMD4-223	ENST00000568301	TRH	P20396	242 aa	Predicted RBP	27.51	■■□□□ 1.99
COMMD4-223	ENST00000568301	SNAPC4	Q5SXM2	1469 aa		27.47	■■□□□ 1.99
COMMD4-223	ENST00000568301	FGD5	Q6ZNL6	1462 aa		27.46	■■□□□ 1.99
COMMD4-223	ENST00000568301	CUX1	P39880	1505 aa		27.41	■■□□□ 1.98
COMMD4-223	ENST00000568301	CHMP7	Q8WUX9	453 aa	Predicted RBP	27.4	■■□□□ 1.98
COMMD4-223	ENST00000568301	WDR97	A6NE52	1622 aa		27.4	■■□□□ 1.98
COMMD4-223	ENST00000568301	CLASP1	Q7Z460	1538 aa		27.4	■■□□□ 1.98
COMMD4-223	ENST00000568301	MAGI1	Q96QZ7	1491 aa	Predicted RBP	27.35	■■□□□ 1.97
COMMD4-223	ENST00000568301	GRIN2B	Q13224	1484 aa		27.33	■■□□□ 1.97
COMMD4-223	ENST00000568301	SYNJ1	O43426	1573 aa		27.33	■■□□□ 1.97
COMMD4-223	ENST00000568301	SYNJ2	O15056	1496 aa		27.28	■■□□□ 1.96
COMMD4-223	ENST00000568301	PBRM1	Q86U86	1689 aa		27.21	■■□□□ 1.95
COMMD4-223	ENST00000568301	GAPVD1	Q14C86	1478 aa		27.21	■■□□□ 1.95
COMMD4-223	ENST00000568301	SUPT5H	O00267	1087 aa	Known RBP	27.16	■■□□□ 1.94
COMMD4-223	ENST00000568301	ABCA10	Q8WWZ4	1543 aa		27.12	■■□□□ 1.93
COMMD4-223	ENST00000568301	ABCA5	Q8WWZ7	1642 aa		27.11	■■□□□ 1.93
COMMD4-223	ENST00000568301	ERCC6L2	Q5T890	1561 aa		26.99	■■□□□ 1.91
COMMD4-223	ENST00000568301	GRIN2A	Q12879	1464 aa		26.99	■■□□□ 1.91
COMMD4-223	ENST00000568301	WRN	Q14191	1432 aa	Predicted RBP eCLIP	26.96	■■□□□ 1.91
COMMD4-223	ENST00000568301	ADAMTS12	P58397	1594 aa		26.92	■■□□□ 1.9
COMMD4-223	ENST00000568301	CEP170	Q5SW79	1584 aa		26.92	■■□□□ 1.9
COMMD4-223	ENST00000568301	AEBP2	Q6ZN18	517 aa	Predicted RBP	26.91	■■□□□ 1.9
COMMD4-223	ENST00000568301	NUP160	Q12769	1436 aa		26.9	■■□□□ 1.9
COMMD4-223	ENST00000568301	TOP2B	Q02880	1626 aa		26.89	■■□□□ 1.9
COMMD4-223	ENST00000568301	BIVM-ERCC5	R4GMW8	1640 aa		26.88	■■□□□ 1.89
COMMD4-223	ENST00000568301	FHAD1	B1AJZ9	1412 aa		26.84	■■□□□ 1.89
COMMD4-223	ENST00000568301	SHROOM2	Q13796	1616 aa		26.82	■■□□□ 1.88
COMMD4-223	ENST00000568301	ERICH3	Q5RHP9	1530 aa		26.77	■■□□□ 1.88
COMMD4-223	ENST00000568301	PRG4	Q92954	1404 aa	Predicted RBP	26.69	■■□□□ 1.86
COMMD4-223	ENST00000568301	JPH4	Q96JJ6	628 aa		26.68	■■□□□ 1.86
COMMD4-223	ENST00000568301	KIF13A	Q9H1H9	1805 aa		26.65	■■□□□ 1.86

Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms