RNA–Protein interactions for RNA: ENST00000568238.1

TSC2-220, Transcript of TSC complex subunit 2, humanhuman

TSL 3

Gene TSC2, Length 422 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSC2-220ENST00000568238 NISCHQ9Y2I1 1504 aa32.01■■■□□ 2.72
TSC2-220ENST00000568238 CCDC180Q9P1Z9 1646 aa28.72■■■□□ 2.19
TSC2-220ENST00000568238 ABCC9O60706 1549 aa28.4■■■□□ 2.14
TSC2-220ENST00000568238 RB1CC1Q8TDY2 1594 aa27.19■■□□□ 1.94
TSC2-220ENST00000568238 NACADO15069 1562 aa27.05■■□□□ 1.92
TSC2-220ENST00000568238 DCAF8L2P0C7V8 631 aa26.81■■□□□ 1.88
TSC2-220ENST00000568238 MYO15BQ96JP2 1530 aa26.74■■□□□ 1.87
TSC2-220ENST00000568238 UNC13AQ9UPW8 1703 aa26.63■■□□□ 1.85
TSC2-220ENST00000568238 ZCCHC6Q5VYS8 1495 aaKnown RBP26.6■■□□□ 1.85
TSC2-220ENST00000568238 DCAF1Q9Y4B6 1507 aa26.48■■□□□ 1.83
TSC2-220ENST00000568238 PABPN1Q86U42 306 aaKnown RBP eCLIP26.41■■□□□ 1.82
TSC2-220ENST00000568238 BICRAQ9NZM4 1560 aa26.37■■□□□ 1.81
TSC2-220ENST00000568238 DNAJC5BQ9UF47 199 aa26.34■■□□□ 1.81
TSC2-220ENST00000568238 SCRIBQ14160 1630 aa26.15■■□□□ 1.78
TSC2-220ENST00000568238 SHROOM4Q9ULL8 1493 aa26.08■■□□□ 1.77
TSC2-220ENST00000568238 CC2D2AQ9P2K1 1620 aa25.71■■□□□ 1.71
TSC2-220ENST00000568238 EIF4G1Q04637 1599 aaKnown RBP25.71■■□□□ 1.71
TSC2-220ENST00000568238 CECR2Q9BXF3 1484 aa25.57■■□□□ 1.68
TSC2-220ENST00000568238 SMARCA4P51532 1647 aa24.97■■□□□ 1.59
TSC2-220ENST00000568238 NCAPD3P42695 1498 aa24.9■■□□□ 1.58
TSC2-220ENST00000568238 ATAD2BQ9ULI0 1458 aa24.88■■□□□ 1.57
TSC2-220ENST00000568238 SMARCA2P51531 1590 aa24.87■■□□□ 1.57
TSC2-220ENST00000568238 BAZ1AQ9NRL2 1556 aaPredicted RBP24.86■■□□□ 1.57
TSC2-220ENST00000568238 HMGXB3Q12766 1538 aa24.82■■□□□ 1.56
TSC2-220ENST00000568238 PEG3Q9GZU2 1588 aa24.71■■□□□ 1.55
TSC2-220ENST00000568238 BAZ1BQ9UIG0 1483 aaKnown RBP24.68■■□□□ 1.54
TSC2-220ENST00000568238 MROH2BQ7Z745 1585 aa24.66■■□□□ 1.54
TSC2-220ENST00000568238 ERCC6Q03468 1493 aa24.54■■□□□ 1.52
TSC2-220ENST00000568238 NESP48681 1621 aa24.46■■□□□ 1.51
TSC2-220ENST00000568238 CUX2O14529 1486 aa24.42■■□□□ 1.5
TSC2-220ENST00000568238 WIZO95785 1651 aa24.41■■□□□ 1.5
TSC2-220ENST00000568238 LAMC3Q9Y6N6 1575 aa24.38■■□□□ 1.49
TSC2-220ENST00000568238 THOC2Q8NI27 1593 aaKnown RBP24.25■■□□□ 1.47
TSC2-220ENST00000568238 KIF21AQ7Z4S6 1674 aa24.24■■□□□ 1.47
TSC2-220ENST00000568238 RSF1Q96T23 1441 aaPredicted RBP24.19■■□□□ 1.46
TSC2-220ENST00000568238 PDS5BQ9NTI5 1447 aa24.18■■□□□ 1.46
TSC2-220ENST00000568238 CADPSQ9ULU8 1353 aa24.16■■□□□ 1.46
TSC2-220ENST00000568238 TOP2AP11388 1531 aaKnown RBP24.12■■□□□ 1.45
TSC2-220ENST00000568238 DNAJC5Q9H3Z4 198 aa24.05■■□□□ 1.44
TSC2-220ENST00000568238 MRC2Q9UBG0 1479 aa23.99■■□□□ 1.43
TSC2-220ENST00000568238 CFTRP13569 1480 aa23.95■■□□□ 1.42
TSC2-220ENST00000568238 WDR62O43379 1518 aa23.94■■□□□ 1.42
TSC2-220ENST00000568238 CEP164Q9UPV0 1460 aa23.94■■□□□ 1.42
TSC2-220ENST00000568238 FANCD2Q9BXW9 1451 aa23.92■■□□□ 1.42
TSC2-220ENST00000568238 PRDM2Q13029 1718 aa23.88■■□□□ 1.41
TSC2-220ENST00000568238 CCDC88BA6NC98 1476 aa23.79■■□□□ 1.4
TSC2-220ENST00000568238 URB2Q14146 1524 aaKnown RBP23.7■■□□□ 1.38
TSC2-220ENST00000568238 TOPBP1Q92547 1522 aa23.49■■□□□ 1.35
TSC2-220ENST00000568238 DNMBPQ6XZF7 1577 aa23.47■■□□□ 1.35
TSC2-220ENST00000568238 ABCC8Q09428 1581 aa23.45■■□□□ 1.34
TSC2-220ENST00000568238 IFT140Q96RY7 1462 aa23.43■■□□□ 1.34
TSC2-220ENST00000568238 ZNF608Q9ULD9 1512 aaPredicted RBP23.37■■□□□ 1.33
TSC2-220ENST00000568238 EIF4G3O43432 1585 aaKnown RBP23.32■■□□□ 1.32
TSC2-220ENST00000568238 TARBP1Q13395 1621 aaKnown RBP23.3■■□□□ 1.32
TSC2-220ENST00000568238 POLA1P09884 1462 aaPredicted RBP23.27■■□□□ 1.32
TSC2-220ENST00000568238 OSCARQ8IYS5 282 aa23.25■■□□□ 1.31
TSC2-220ENST00000568238 SUPT5HO00267 1087 aaKnown RBP23.23■■□□□ 1.31
TSC2-220ENST00000568238 CUX1P39880 1505 aa23.18■■□□□ 1.3
TSC2-220ENST00000568238 FGD5Q6ZNL6 1462 aa23.16■■□□□ 1.3
TSC2-220ENST00000568238 AQRO60306 1485 aaKnown RBP eCLIP23.15■■□□□ 1.33e-7■■■□□ 19.1
TSC2-220ENST00000568238 RAD54L2Q9Y4B4 1467 aa23.14■■□□□ 1.29
TSC2-220ENST00000568238 CHD1O14646 1710 aa23.13■■□□□ 1.29
TSC2-220ENST00000568238 SOGA1O94964 1423 aa23.12■■□□□ 1.29
TSC2-220ENST00000568238 WDR97A6NE52 1622 aa23.11■■□□□ 1.29
TSC2-220ENST00000568238 TRIM41Q8WV44 630 aa23.11■■□□□ 1.29
TSC2-220ENST00000568238 RIMBP3CA6NJZ7 1639 aa23.04■■□□□ 1.28
TSC2-220ENST00000568238 RIMBP3BA6NNM3 1639 aa23.04■■□□□ 1.28
TSC2-220ENST00000568238 RIMBP3Q9UFD9 1639 aa23.04■■□□□ 1.28
TSC2-220ENST00000568238 TDRD9Q8NDG6 1382 aaKnown RBP23.02■■□□□ 1.28
TSC2-220ENST00000568238 SNAPC4Q5SXM2 1469 aa22.98■■□□□ 1.27
TSC2-220ENST00000568238 ARHGEF11O15085 1522 aa22.97■■□□□ 1.27
TSC2-220ENST00000568238 PBRM1Q86U86 1689 aa22.95■■□□□ 1.26
TSC2-220ENST00000568238 MAGI1Q96QZ7 1491 aaPredicted RBP22.94■■□□□ 1.26
TSC2-220ENST00000568238 GRIN2BQ13224 1484 aa22.93■■□□□ 1.26
TSC2-220ENST00000568238 FBLN2P98095 1184 aa22.93■■□□□ 1.26
TSC2-220ENST00000568238 BIVM-ERCC5R4GMW8 1640 aa22.91■■□□□ 1.26
TSC2-220ENST00000568238 ABCA10Q8WWZ4 1543 aa22.91■■□□□ 1.26
TSC2-220ENST00000568238 ABCA5Q8WWZ7 1642 aa22.9■■□□□ 1.26
TSC2-220ENST00000568238 TOP2BQ02880 1626 aa22.89■■□□□ 1.25
TSC2-220ENST00000568238 GAPVD1Q14C86 1478 aa22.88■■□□□ 1.25
TSC2-220ENST00000568238 SYNJ1O43426 1573 aa22.87■■□□□ 1.25
TSC2-220ENST00000568238 WRNQ14191 1432 aaPredicted RBP eCLIP22.85■■□□□ 1.25
TSC2-220ENST00000568238 SYNJ2O15056 1496 aa22.84■■□□□ 1.25
TSC2-220ENST00000568238 CLASP1Q7Z460 1538 aa22.82■■□□□ 1.24
TSC2-220ENST00000568238 CHMP7Q8WUX9 453 aaPredicted RBP22.81■■□□□ 1.24
TSC2-220ENST00000568238 ARAP1Q96P48 1450 aa22.75■■□□□ 1.23
TSC2-220ENST00000568238 ADAMTS12P58397 1594 aa22.72■■□□□ 1.23
TSC2-220ENST00000568238 CYB5RLQ6IPT4 315 aa22.69■■□□□ 1.22
TSC2-220ENST00000568238 GRIN2AQ12879 1464 aa22.65■■□□□ 1.22
TSC2-220ENST00000568238 ERICH3Q5RHP9 1530 aa22.64■■□□□ 1.21
TSC2-220ENST00000568238 FHAD1B1AJZ9 1412 aa22.59■■□□□ 1.21
TSC2-220ENST00000568238 CEP170Q5SW79 1584 aa22.57■■□□□ 1.2
TSC2-220ENST00000568238 NUP160Q12769 1436 aa22.56■■□□□ 1.2
TSC2-220ENST00000568238 SHROOM2Q13796 1616 aa22.48■■□□□ 1.19
TSC2-220ENST00000568238 ERCC6L2Q5T890 1561 aa22.46■■□□□ 1.19
TSC2-220ENST00000568238 CUL7Q14999 1698 aa22.41■■□□□ 1.18
TSC2-220ENST00000568238 KIF27Q86VH2 1401 aa22.4■■□□□ 1.18
TSC2-220ENST00000568238 RUSC2Q8N2Y8 1516 aa22.4■■□□□ 1.18
TSC2-220ENST00000568238 TRHP20396 242 aaPredicted RBP22.38■■□□□ 1.17
TSC2-220ENST00000568238 IGF1RP08069 1367 aa22.31■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms