RNA–Protein interactions for RNA: ENST00000567992.1

CLK3-220, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 603 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-220ENST00000567992 NISCHQ9Y2I1 1504 aa24.03■■□□□ 1.44
CLK3-220ENST00000567992 CCDC180Q9P1Z9 1646 aa21.4■■□□□ 1.02
CLK3-220ENST00000567992 ABCC9O60706 1549 aa20.82■□□□□ 0.92
CLK3-220ENST00000567992 RB1CC1Q8TDY2 1594 aa20.06■□□□□ 0.8
CLK3-220ENST00000567992 ZCCHC6Q5VYS8 1495 aaKnown RBP20.05■□□□□ 0.8
CLK3-220ENST00000567992 NACADO15069 1562 aa20.05■□□□□ 0.8
CLK3-220ENST00000567992 MYO15BQ96JP2 1530 aa19.97■□□□□ 0.79
CLK3-220ENST00000567992 DCAF1Q9Y4B6 1507 aa19.9■□□□□ 0.78
CLK3-220ENST00000567992 DCAF8L2P0C7V8 631 aa19.87■□□□□ 0.77
CLK3-220ENST00000567992 UNC13AQ9UPW8 1703 aa19.71■□□□□ 0.75
CLK3-220ENST00000567992 BICRAQ9NZM4 1560 aa19.53■□□□□ 0.72
CLK3-220ENST00000567992 SCRIBQ14160 1630 aa19.49■□□□□ 0.71
CLK3-220ENST00000567992 PABPN1Q86U42 306 aaKnown RBP eCLIP19.41■□□□□ 0.7
CLK3-220ENST00000567992 SHROOM4Q9ULL8 1493 aa19.28■□□□□ 0.68
CLK3-220ENST00000567992 DNAJC5BQ9UF47 199 aa19.08■□□□□ 0.64
CLK3-220ENST00000567992 EIF4G1Q04637 1599 aaKnown RBP18.97■□□□□ 0.63
CLK3-220ENST00000567992 CC2D2AQ9P2K1 1620 aa18.88■□□□□ 0.61
CLK3-220ENST00000567992 CECR2Q9BXF3 1484 aa18.71■□□□□ 0.59
CLK3-220ENST00000567992 SMARCA4P51532 1647 aa18.67■□□□□ 0.58
CLK3-220ENST00000567992 BAZ1AQ9NRL2 1556 aaPredicted RBP18.61■□□□□ 0.57
CLK3-220ENST00000567992 MROH2BQ7Z745 1585 aa18.52■□□□□ 0.56
CLK3-220ENST00000567992 ATAD2BQ9ULI0 1458 aa18.52■□□□□ 0.55
CLK3-220ENST00000567992 NCAPD3P42695 1498 aa18.5■□□□□ 0.55
CLK3-220ENST00000567992 PEG3Q9GZU2 1588 aa18.5■□□□□ 0.55
CLK3-220ENST00000567992 SMARCA2P51531 1590 aa18.49■□□□□ 0.55
CLK3-220ENST00000567992 HMGXB3Q12766 1538 aa18.44■□□□□ 0.54
CLK3-220ENST00000567992 BAZ1BQ9UIG0 1483 aaKnown RBP18.34■□□□□ 0.53
CLK3-220ENST00000567992 WIZO95785 1651 aa18.34■□□□□ 0.53
CLK3-220ENST00000567992 RSF1Q96T23 1441 aaPredicted RBP18.3■□□□□ 0.52
CLK3-220ENST00000567992 TOP2AP11388 1531 aaKnown RBP18.14■□□□□ 0.49
CLK3-220ENST00000567992 NESP48681 1621 aa18.06■□□□□ 0.48
CLK3-220ENST00000567992 LAMC3Q9Y6N6 1575 aa18.01■□□□□ 0.47
CLK3-220ENST00000567992 CADPSQ9ULU8 1353 aa17.92■□□□□ 0.46
CLK3-220ENST00000567992 ERCC6Q03468 1493 aa17.9■□□□□ 0.46
CLK3-220ENST00000567992 CCDC88BA6NC98 1476 aa17.89■□□□□ 0.45
CLK3-220ENST00000567992 KIF21AQ7Z4S6 1674 aa17.89■□□□□ 0.45
CLK3-220ENST00000567992 CFTRP13569 1480 aa17.87■□□□□ 0.45
CLK3-220ENST00000567992 THOC2Q8NI27 1593 aaKnown RBP17.84■□□□□ 0.45
CLK3-220ENST00000567992 PDS5BQ9NTI5 1447 aa17.83■□□□□ 0.45
CLK3-220ENST00000567992 PRDM2Q13029 1718 aa17.81■□□□□ 0.44
CLK3-220ENST00000567992 CUX2O14529 1486 aa17.75■□□□□ 0.43
CLK3-220ENST00000567992 FANCD2Q9BXW9 1451 aa17.74■□□□□ 0.43
CLK3-220ENST00000567992 SUPT5HO00267 1087 aaKnown RBP17.73■□□□□ 0.43
CLK3-220ENST00000567992 AEBP2Q6ZN18 517 aaPredicted RBP17.73■□□□□ 0.43
CLK3-220ENST00000567992 CEP164Q9UPV0 1460 aa17.71■□□□□ 0.43
CLK3-220ENST00000567992 MRC2Q9UBG0 1479 aa17.69■□□□□ 0.42
CLK3-220ENST00000567992 WDR62O43379 1518 aa17.68■□□□□ 0.42
CLK3-220ENST00000567992 URB2Q14146 1524 aaKnown RBP17.6■□□□□ 0.41
CLK3-220ENST00000567992 TOPBP1Q92547 1522 aa17.48■□□□□ 0.39
CLK3-220ENST00000567992 DNMBPQ6XZF7 1577 aa17.48■□□□□ 0.39
CLK3-220ENST00000567992 ABCC8Q09428 1581 aa17.43■□□□□ 0.38
CLK3-220ENST00000567992 CUX1P39880 1505 aa17.38■□□□□ 0.37
CLK3-220ENST00000567992 POLA1P09884 1462 aaPredicted RBP17.34■□□□□ 0.37
CLK3-220ENST00000567992 IFT140Q96RY7 1462 aa17.34■□□□□ 0.37
CLK3-220ENST00000567992 TARBP1Q13395 1621 aaKnown RBP17.33■□□□□ 0.37
CLK3-220ENST00000567992 FGD5Q6ZNL6 1462 aa17.3■□□□□ 0.36
CLK3-220ENST00000567992 ZNF608Q9ULD9 1512 aaPredicted RBP17.29■□□□□ 0.36
CLK3-220ENST00000567992 BIVM-ERCC5R4GMW8 1640 aa17.26■□□□□ 0.35
CLK3-220ENST00000567992 SYNJ1O43426 1573 aa17.26■□□□□ 0.35
CLK3-220ENST00000567992 EIF4G3O43432 1585 aaKnown RBP17.26■□□□□ 0.35
CLK3-220ENST00000567992 RAD54L2Q9Y4B4 1467 aa17.24■□□□□ 0.35
CLK3-220ENST00000567992 WDR97A6NE52 1622 aa17.24■□□□□ 0.35
CLK3-220ENST00000567992 TOP2BQ02880 1626 aa17.24■□□□□ 0.35
CLK3-220ENST00000567992 WRNQ14191 1432 aaPredicted RBP eCLIP17.22■□□□□ 0.35
CLK3-220ENST00000567992 SOGA1O94964 1423 aa17.21■□□□□ 0.34
CLK3-220ENST00000567992 AQRO60306 1485 aaKnown RBP eCLIP17.16■□□□□ 0.34
CLK3-220ENST00000567992 ABCA10Q8WWZ4 1543 aa17.13■□□□□ 0.33
CLK3-220ENST00000567992 ABCA5Q8WWZ7 1642 aa17.11■□□□□ 0.33
CLK3-220ENST00000567992 DNAJC5Q9H3Z4 198 aa17.11■□□□□ 0.33
CLK3-220ENST00000567992 TDRD9Q8NDG6 1382 aaKnown RBP17.11■□□□□ 0.33
CLK3-220ENST00000567992 PBRM1Q86U86 1689 aa17.07■□□□□ 0.32
CLK3-220ENST00000567992 GAPVD1Q14C86 1478 aa17.04■□□□□ 0.32
CLK3-220ENST00000567992 CHD1O14646 1710 aa17.04■□□□□ 0.32
CLK3-220ENST00000567992 GRIN2BQ13224 1484 aa17.03■□□□□ 0.32
CLK3-220ENST00000567992 SNAPC4Q5SXM2 1469 aa17.03■□□□□ 0.32
CLK3-220ENST00000567992 MAGI1Q96QZ7 1491 aaPredicted RBP16.99■□□□□ 0.31
CLK3-220ENST00000567992 ADAMTS12P58397 1594 aa16.94■□□□□ 0.3
CLK3-220ENST00000567992 SYNJ2O15056 1496 aa16.93■□□□□ 0.3
CLK3-220ENST00000567992 ERICH3Q5RHP9 1530 aa16.92■□□□□ 0.3
CLK3-220ENST00000567992 OSCARQ8IYS5 282 aa16.92■□□□□ 0.3
CLK3-220ENST00000567992 CLASP1Q7Z460 1538 aa16.86■□□□□ 0.29
CLK3-220ENST00000567992 KIF27Q86VH2 1401 aa16.85■□□□□ 0.29
CLK3-220ENST00000567992 FBLN2P98095 1184 aa16.84■□□□□ 0.29
CLK3-220ENST00000567992 FHAD1B1AJZ9 1412 aa16.83■□□□□ 0.28
CLK3-220ENST00000567992 GRIN2AQ12879 1464 aa16.83■□□□□ 0.28
CLK3-220ENST00000567992 CHMP7Q8WUX9 453 aaPredicted RBP16.81■□□□□ 0.28
CLK3-220ENST00000567992 CUL7Q14999 1698 aa16.79■□□□□ 0.28
CLK3-220ENST00000567992 IGF1RP08069 1367 aa16.78■□□□□ 0.28
CLK3-220ENST00000567992 RIMBP3CA6NJZ7 1639 aa16.78■□□□□ 0.28
CLK3-220ENST00000567992 RIMBP3BA6NNM3 1639 aa16.78■□□□□ 0.28
CLK3-220ENST00000567992 RIMBP3Q9UFD9 1639 aa16.78■□□□□ 0.28
CLK3-220ENST00000567992 CEP170Q5SW79 1584 aa16.78■□□□□ 0.28
CLK3-220ENST00000567992 NUP160Q12769 1436 aa16.77■□□□□ 0.27
CLK3-220ENST00000567992 ARHGEF11O15085 1522 aa16.76■□□□□ 0.27
CLK3-220ENST00000567992 RUSC2Q8N2Y8 1516 aa16.75■□□□□ 0.27
CLK3-220ENST00000567992 TRIM41Q8WV44 630 aa16.75■□□□□ 0.27
CLK3-220ENST00000567992 SHROOM2Q13796 1616 aa16.69■□□□□ 0.26
CLK3-220ENST00000567992 CARMIL1Q5VZK9 1371 aa16.66■□□□□ 0.26
CLK3-220ENST00000567992 ARAP1Q96P48 1450 aa16.64■□□□□ 0.25
CLK3-220ENST00000567992 ERCC6L2Q5T890 1561 aa16.63■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms