RNA–Protein interactions for RNA: ENST00000567811.1

SMPD3-210, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 2

Gene SMPD3, Length 576 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-210ENST00000567811 NISCHQ9Y2I1 1504 aa17.52■□□□□ 0.39
SMPD3-210ENST00000567811 CCDC180Q9P1Z9 1646 aa15.6■□□□□ 0.09
SMPD3-210ENST00000567811 ABCC9O60706 1549 aa15.44■□□□□ 0.06
SMPD3-210ENST00000567811 DCAF8L2P0C7V8 631 aa14.87□□□□□ -0.03
SMPD3-210ENST00000567811 RB1CC1Q8TDY2 1594 aa14.78□□□□□ -0.04
SMPD3-210ENST00000567811 NACADO15069 1562 aa14.74□□□□□ -0.05
SMPD3-210ENST00000567811 MYO15BQ96JP2 1530 aa14.57□□□□□ -0.08
SMPD3-210ENST00000567811 ZCCHC6Q5VYS8 1495 aaKnown RBP14.5□□□□□ -0.09
SMPD3-210ENST00000567811 PABPN1Q86U42 306 aaKnown RBP eCLIP14.48□□□□□ -0.09
SMPD3-210ENST00000567811 UNC13AQ9UPW8 1703 aa14.48□□□□□ -0.09
SMPD3-210ENST00000567811 DCAF1Q9Y4B6 1507 aa14.46□□□□□ -0.1
SMPD3-210ENST00000567811 DNAJC5BQ9UF47 199 aa14.4□□□□□ -0.1
SMPD3-210ENST00000567811 BICRAQ9NZM4 1560 aa14.33□□□□□ -0.12
SMPD3-210ENST00000567811 SCRIBQ14160 1630 aa14.22□□□□□ -0.13
SMPD3-210ENST00000567811 SHROOM4Q9ULL8 1493 aa14.11□□□□□ -0.15
SMPD3-210ENST00000567811 CC2D2AQ9P2K1 1620 aa13.96□□□□□ -0.17
SMPD3-210ENST00000567811 EIF4G1Q04637 1599 aaKnown RBP13.96□□□□□ -0.18
SMPD3-210ENST00000567811 CECR2Q9BXF3 1484 aa13.89□□□□□ -0.19
SMPD3-210ENST00000567811 NCAPD3P42695 1498 aa13.61□□□□□ -0.23
SMPD3-210ENST00000567811 SMARCA4P51532 1647 aa13.6□□□□□ -0.23
SMPD3-210ENST00000567811 ATAD2BQ9ULI0 1458 aa13.58□□□□□ -0.24
SMPD3-210ENST00000567811 BAZ1AQ9NRL2 1556 aaPredicted RBP13.57□□□□□ -0.24
SMPD3-210ENST00000567811 SMARCA2P51531 1590 aa13.55□□□□□ -0.24
SMPD3-210ENST00000567811 MROH2BQ7Z745 1585 aa13.49□□□□□ -0.25
SMPD3-210ENST00000567811 HMGXB3Q12766 1538 aa13.47□□□□□ -0.25
SMPD3-210ENST00000567811 PEG3Q9GZU2 1588 aa13.45□□□□□ -0.26
SMPD3-210ENST00000567811 BAZ1BQ9UIG0 1483 aaKnown RBP13.45□□□□□ -0.26
SMPD3-210ENST00000567811 WIZO95785 1651 aa13.36□□□□□ -0.27
SMPD3-210ENST00000567811 ERCC6Q03468 1493 aa13.33□□□□□ -0.28
SMPD3-210ENST00000567811 NESP48681 1621 aa13.32□□□□□ -0.28
SMPD3-210ENST00000567811 RSF1Q96T23 1441 aaPredicted RBP13.3□□□□□ -0.28
SMPD3-210ENST00000567811 LAMC3Q9Y6N6 1575 aa13.26□□□□□ -0.29
SMPD3-210ENST00000567811 CADPSQ9ULU8 1353 aa13.23□□□□□ -0.29
SMPD3-210ENST00000567811 CUX2O14529 1486 aa13.22□□□□□ -0.29
SMPD3-210ENST00000567811 PDS5BQ9NTI5 1447 aa13.21□□□□□ -0.3
SMPD3-210ENST00000567811 KIF21AQ7Z4S6 1674 aa13.15□□□□□ -0.3
SMPD3-210ENST00000567811 TOP2AP11388 1531 aaKnown RBP13.15□□□□□ -0.3
SMPD3-210ENST00000567811 DNAJC5Q9H3Z4 198 aa13.1□□□□□ -0.31
SMPD3-210ENST00000567811 CFTRP13569 1480 aa13.09□□□□□ -0.31
SMPD3-210ENST00000567811 THOC2Q8NI27 1593 aaKnown RBP13.08□□□□□ -0.32
SMPD3-210ENST00000567811 CCDC88BA6NC98 1476 aa13.06□□□□□ -0.32
SMPD3-210ENST00000567811 FANCD2Q9BXW9 1451 aa13.04□□□□□ -0.32
SMPD3-210ENST00000567811 MRC2Q9UBG0 1479 aa13.03□□□□□ -0.32
SMPD3-210ENST00000567811 CEP164Q9UPV0 1460 aa13.03□□□□□ -0.32
SMPD3-210ENST00000567811 PRDM2Q13029 1718 aa12.97□□□□□ -0.33
SMPD3-210ENST00000567811 WDR62O43379 1518 aa12.97□□□□□ -0.33
SMPD3-210ENST00000567811 SUPT5HO00267 1087 aaKnown RBP12.96□□□□□ -0.33
SMPD3-210ENST00000567811 URB2Q14146 1524 aaKnown RBP12.9□□□□□ -0.34
SMPD3-210ENST00000567811 ABCC8Q09428 1581 aa12.86□□□□□ -0.35
SMPD3-210ENST00000567811 TOPBP1Q92547 1522 aa12.81□□□□□ -0.36
SMPD3-210ENST00000567811 OSCARQ8IYS5 282 aa12.78□□□□□ -0.36
SMPD3-210ENST00000567811 IFT140Q96RY7 1462 aa12.78□□□□□ -0.36
SMPD3-210ENST00000567811 DNMBPQ6XZF7 1577 aa12.77□□□□□ -0.37
SMPD3-210ENST00000567811 ZNF608Q9ULD9 1512 aaPredicted RBP12.72□□□□□ -0.37
SMPD3-210ENST00000567811 SOGA1O94964 1423 aa12.71□□□□□ -0.38
SMPD3-210ENST00000567811 POLA1P09884 1462 aaPredicted RBP12.68□□□□□ -0.38
SMPD3-210ENST00000567811 TARBP1Q13395 1621 aaKnown RBP12.68□□□□□ -0.38
SMPD3-210ENST00000567811 AQRO60306 1485 aaKnown RBP eCLIP12.67□□□□□ -0.38
SMPD3-210ENST00000567811 RAD54L2Q9Y4B4 1467 aa12.66□□□□□ -0.38
SMPD3-210ENST00000567811 CUX1P39880 1505 aa12.65□□□□□ -0.38
SMPD3-210ENST00000567811 TDRD9Q8NDG6 1382 aaKnown RBP12.64□□□□□ -0.39
SMPD3-210ENST00000567811 FGD5Q6ZNL6 1462 aa12.64□□□□□ -0.39
SMPD3-210ENST00000567811 FBLN2P98095 1184 aa12.63□□□□□ -0.39
SMPD3-210ENST00000567811 EIF4G3O43432 1585 aaKnown RBP12.61□□□□□ -0.39
SMPD3-210ENST00000567811 TRIM41Q8WV44 630 aa12.6□□□□□ -0.39
SMPD3-210ENST00000567811 CHMP7Q8WUX9 453 aaPredicted RBP12.56□□□□□ -0.4
SMPD3-210ENST00000567811 WDR97A6NE52 1622 aa12.55□□□□□ -0.4
SMPD3-210ENST00000567811 WRNQ14191 1432 aaPredicted RBP eCLIP12.54□□□□□ -0.4
SMPD3-210ENST00000567811 CHD1O14646 1710 aa12.54□□□□□ -0.4
SMPD3-210ENST00000567811 GRIN2BQ13224 1484 aa12.52□□□□□ -0.41
SMPD3-210ENST00000567811 GAPVD1Q14C86 1478 aa12.52□□□□□ -0.41
SMPD3-210ENST00000567811 ABCA10Q8WWZ4 1543 aa12.51□□□□□ -0.41
SMPD3-210ENST00000567811 TOP2BQ02880 1626 aa12.51□□□□□ -0.41
SMPD3-210ENST00000567811 BIVM-ERCC5R4GMW8 1640 aa12.5□□□□□ -0.41
SMPD3-210ENST00000567811 SNAPC4Q5SXM2 1469 aa12.49□□□□□ -0.41
SMPD3-210ENST00000567811 MAGI1Q96QZ7 1491 aaPredicted RBP12.48□□□□□ -0.41
SMPD3-210ENST00000567811 SYNJ1O43426 1573 aa12.47□□□□□ -0.41
SMPD3-210ENST00000567811 PBRM1Q86U86 1689 aa12.47□□□□□ -0.41
SMPD3-210ENST00000567811 RIMBP3CA6NJZ7 1639 aa12.47□□□□□ -0.41
SMPD3-210ENST00000567811 RIMBP3BA6NNM3 1639 aa12.47□□□□□ -0.41
SMPD3-210ENST00000567811 RIMBP3Q9UFD9 1639 aa12.47□□□□□ -0.41
SMPD3-210ENST00000567811 CYB5RLQ6IPT4 315 aa12.46□□□□□ -0.41
SMPD3-210ENST00000567811 SYNJ2O15056 1496 aa12.45□□□□□ -0.42
SMPD3-210ENST00000567811 ARHGEF11O15085 1522 aa12.43□□□□□ -0.42
SMPD3-210ENST00000567811 ABCA5Q8WWZ7 1642 aa12.43□□□□□ -0.42
SMPD3-210ENST00000567811 ERICH3Q5RHP9 1530 aa12.36□□□□□ -0.43
SMPD3-210ENST00000567811 CLASP1Q7Z460 1538 aa12.36□□□□□ -0.43
SMPD3-210ENST00000567811 FHAD1B1AJZ9 1412 aa12.36□□□□□ -0.43
SMPD3-210ENST00000567811 GRIN2AQ12879 1464 aa12.34□□□□□ -0.43
SMPD3-210ENST00000567811 IGF1RP08069 1367 aa12.31□□□□□ -0.44
SMPD3-210ENST00000567811 KIF27Q86VH2 1401 aa12.31□□□□□ -0.44
SMPD3-210ENST00000567811 ARAP1Q96P48 1450 aa12.31□□□□□ -0.44
SMPD3-210ENST00000567811 ADAMTS12P58397 1594 aa12.3□□□□□ -0.44
SMPD3-210ENST00000567811 JPH4Q96JJ6 628 aa12.3□□□□□ -0.44
SMPD3-210ENST00000567811 NUP160Q12769 1436 aa12.28□□□□□ -0.44
SMPD3-210ENST00000567811 CEP170Q5SW79 1584 aa12.27□□□□□ -0.44
SMPD3-210ENST00000567811 TRHP20396 242 aaPredicted RBP12.26□□□□□ -0.45
SMPD3-210ENST00000567811 CARMIL1Q5VZK9 1371 aa12.24□□□□□ -0.45
SMPD3-210ENST00000567811 CUL7Q14999 1698 aa12.2□□□□□ -0.46
SMPD3-210ENST00000567811 SHROOM2Q13796 1616 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms