RNA–Protein interactions for RNA: ENST00000567806.1

GTF3C1-207, Transcript of general transcription factor IIIC subunit 1, humanhuman

TSL 4

Gene GTF3C1, Length 584 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3C1-207ENST00000567806 NISCHQ9Y2I1 1504 aa46.88■■■■■ 5.09
GTF3C1-207ENST00000567806 ABCC9O60706 1549 aa42.1■■■■■ 4.33
GTF3C1-207ENST00000567806 CCDC180Q9P1Z9 1646 aa41.97■■■■■ 4.31
GTF3C1-207ENST00000567806 RB1CC1Q8TDY2 1594 aa40.04■■■■■ 4
GTF3C1-207ENST00000567806 DCAF8L2P0C7V8 631 aa39.81■■■■□ 3.96
GTF3C1-207ENST00000567806 NACADO15069 1562 aa39.77■■■■□ 3.96
GTF3C1-207ENST00000567806 DNAJC5BQ9UF47 199 aa39.53■■■■□ 3.92
GTF3C1-207ENST00000567806 PABPN1Q86U42 306 aaKnown RBP eCLIP39.29■■■■□ 3.88
GTF3C1-207ENST00000567806 MYO15BQ96JP2 1530 aa39.19■■■■□ 3.86
GTF3C1-207ENST00000567806 UNC13AQ9UPW8 1703 aa38.98■■■■□ 3.83
GTF3C1-207ENST00000567806 BICRAQ9NZM4 1560 aa38.81■■■■□ 3.8
GTF3C1-207ENST00000567806 ZCCHC6Q5VYS8 1495 aaKnown RBP38.8■■■■□ 3.8
GTF3C1-207ENST00000567806 DCAF1Q9Y4B6 1507 aa38.69■■■■□ 3.78
GTF3C1-207ENST00000567806 SHROOM4Q9ULL8 1493 aa38.32■■■■□ 3.72
GTF3C1-207ENST00000567806 SCRIBQ14160 1630 aa38.3■■■■□ 3.72
GTF3C1-207ENST00000567806 CC2D2AQ9P2K1 1620 aa37.97■■■■□ 3.67
GTF3C1-207ENST00000567806 CECR2Q9BXF3 1484 aa37.93■■■■□ 3.66
GTF3C1-207ENST00000567806 EIF4G1Q04637 1599 aaKnown RBP37.89■■■■□ 3.66
GTF3C1-207ENST00000567806 NCAPD3P42695 1498 aa36.75■■■■□ 3.47
GTF3C1-207ENST00000567806 ATAD2BQ9ULI0 1458 aa36.62■■■■□ 3.45
GTF3C1-207ENST00000567806 SMARCA4P51532 1647 aa36.52■■■■□ 3.44
GTF3C1-207ENST00000567806 SMARCA2P51531 1590 aa36.51■■■■□ 3.44
GTF3C1-207ENST00000567806 HMGXB3Q12766 1538 aa36.4■■■■□ 3.42
GTF3C1-207ENST00000567806 ERCC6Q03468 1493 aa36.39■■■■□ 3.42
GTF3C1-207ENST00000567806 BAZ1AQ9NRL2 1556 aaPredicted RBP36.39■■■■□ 3.42
GTF3C1-207ENST00000567806 DNAJC5Q9H3Z4 198 aa36.35■■■■□ 3.41
GTF3C1-207ENST00000567806 BAZ1BQ9UIG0 1483 aaKnown RBP36.28■■■■□ 3.4
GTF3C1-207ENST00000567806 CUX2O14529 1486 aa36.26■■■■□ 3.4
GTF3C1-207ENST00000567806 PEG3Q9GZU2 1588 aa36.15■■■■□ 3.38
GTF3C1-207ENST00000567806 NESP48681 1621 aa36.14■■■■□ 3.38
GTF3C1-207ENST00000567806 MROH2BQ7Z745 1585 aa36.11■■■■□ 3.37
GTF3C1-207ENST00000567806 LAMC3Q9Y6N6 1575 aa35.87■■■■□ 3.33
GTF3C1-207ENST00000567806 PDS5BQ9NTI5 1447 aa35.76■■■■□ 3.32
GTF3C1-207ENST00000567806 THOC2Q8NI27 1593 aaKnown RBP35.68■■■■□ 3.3
GTF3C1-207ENST00000567806 CADPSQ9ULU8 1353 aa35.67■■■■□ 3.3
GTF3C1-207ENST00000567806 WIZO95785 1651 aa35.65■■■■□ 3.3
GTF3C1-207ENST00000567806 KIF21AQ7Z4S6 1674 aa35.59■■■■□ 3.29
GTF3C1-207ENST00000567806 RSF1Q96T23 1441 aaPredicted RBP35.41■■■■□ 3.26
GTF3C1-207ENST00000567806 MRC2Q9UBG0 1479 aa35.39■■■■□ 3.26
GTF3C1-207ENST00000567806 CEP164Q9UPV0 1460 aa35.26■■■■□ 3.23
GTF3C1-207ENST00000567806 WDR62O43379 1518 aa35.24■■■■□ 3.23
GTF3C1-207ENST00000567806 FANCD2Q9BXW9 1451 aa35.22■■■■□ 3.23
GTF3C1-207ENST00000567806 TOP2AP11388 1531 aaKnown RBP35.22■■■■□ 3.23
GTF3C1-207ENST00000567806 CFTRP13569 1480 aa35.21■■■■□ 3.23
GTF3C1-207ENST00000567806 URB2Q14146 1524 aaKnown RBP34.9■■■■□ 3.18
GTF3C1-207ENST00000567806 CCDC88BA6NC98 1476 aa34.88■■■■□ 3.17
GTF3C1-207ENST00000567806 TRIM41Q8WV44 630 aa34.8■■■■□ 3.16
GTF3C1-207ENST00000567806 OSCARQ8IYS5 282 aa34.76■■■■□ 3.16
GTF3C1-207ENST00000567806 PRDM2Q13029 1718 aa34.7■■■■□ 3.15
GTF3C1-207ENST00000567806 IFT140Q96RY7 1462 aa34.57■■■■□ 3.12
GTF3C1-207ENST00000567806 TOPBP1Q92547 1522 aa34.54■■■■□ 3.12
GTF3C1-207ENST00000567806 ABCC8Q09428 1581 aa34.53■■■■□ 3.12
GTF3C1-207ENST00000567806 ZNF608Q9ULD9 1512 aaPredicted RBP34.48■■■■□ 3.11
GTF3C1-207ENST00000567806 DNMBPQ6XZF7 1577 aa34.39■■■■□ 3.1
GTF3C1-207ENST00000567806 EIF4G3O43432 1585 aaKnown RBP34.23■■■■□ 3.07
GTF3C1-207ENST00000567806 AQRO60306 1485 aaKnown RBP eCLIP34.22■■■■□ 3.07
GTF3C1-207ENST00000567806 POLA1P09884 1462 aaPredicted RBP34.18■■■■□ 3.06
GTF3C1-207ENST00000567806 TARBP1Q13395 1621 aaKnown RBP34.17■■■■□ 3.06
GTF3C1-207ENST00000567806 FBLN2P98095 1184 aa34.12■■■■□ 3.05
GTF3C1-207ENST00000567806 SOGA1O94964 1423 aa34.12■■■■□ 3.05
GTF3C1-207ENST00000567806 RIMBP3CA6NJZ7 1639 aa34.12■■■■□ 3.05
GTF3C1-207ENST00000567806 RIMBP3BA6NNM3 1639 aa34.12■■■■□ 3.05
GTF3C1-207ENST00000567806 RIMBP3Q9UFD9 1639 aa34.12■■■■□ 3.05
GTF3C1-207ENST00000567806 RAD54L2Q9Y4B4 1467 aa34.08■■■■□ 3.05
GTF3C1-207ENST00000567806 TDRD9Q8NDG6 1382 aaKnown RBP34.04■■■■□ 3.04
GTF3C1-207ENST00000567806 ARHGEF11O15085 1522 aa34.04■■■■□ 3.04
GTF3C1-207ENST00000567806 SUPT5HO00267 1087 aaKnown RBP34■■■■□ 3.03
GTF3C1-207ENST00000567806 FGD5Q6ZNL6 1462 aa33.97■■■■□ 3.03
GTF3C1-207ENST00000567806 CYB5RLQ6IPT4 315 aa33.95■■■■□ 3.03
GTF3C1-207ENST00000567806 CHD1O14646 1710 aa33.95■■■■□ 3.03
GTF3C1-207ENST00000567806 CUX1P39880 1505 aa33.92■■■■□ 3.02
GTF3C1-207ENST00000567806 CHMP7Q8WUX9 453 aaPredicted RBP33.86■■■■□ 3.01
GTF3C1-207ENST00000567806 SNAPC4Q5SXM2 1469 aa33.83■■■■□ 3.01
GTF3C1-207ENST00000567806 WDR97A6NE52 1622 aa33.83■■■■□ 3.01
GTF3C1-207ENST00000567806 GRIN2BQ13224 1484 aa33.77■■■■□ 3
GTF3C1-207ENST00000567806 MAGI1Q96QZ7 1491 aaPredicted RBP33.75■■■□□ 2.99
GTF3C1-207ENST00000567806 ARAP1Q96P48 1450 aa33.69■■■□□ 2.98
GTF3C1-207ENST00000567806 GAPVD1Q14C86 1478 aa33.66■■■□□ 2.98
GTF3C1-207ENST00000567806 SYNJ2O15056 1496 aa33.64■■■□□ 2.98
GTF3C1-207ENST00000567806 SYNJ1O43426 1573 aa33.64■■■□□ 2.98
GTF3C1-207ENST00000567806 TRHP20396 242 aaPredicted RBP33.61■■■□□ 2.97
GTF3C1-207ENST00000567806 CLASP1Q7Z460 1538 aa33.59■■■□□ 2.97
GTF3C1-207ENST00000567806 ABCA10Q8WWZ4 1543 aa33.59■■■□□ 2.97
GTF3C1-207ENST00000567806 WRNQ14191 1432 aaPredicted RBP eCLIP33.53■■■□□ 2.96
GTF3C1-207ENST00000567806 PBRM1Q86U86 1689 aa33.51■■■□□ 2.95
GTF3C1-207ENST00000567806 ABCA5Q8WWZ7 1642 aa33.46■■■□□ 2.95
GTF3C1-207ENST00000567806 TOP2BQ02880 1626 aa33.36■■■□□ 2.93
GTF3C1-207ENST00000567806 BIVM-ERCC5R4GMW8 1640 aa33.33■■■□□ 2.93
GTF3C1-207ENST00000567806 GRIN2AQ12879 1464 aa33.31■■■□□ 2.92
GTF3C1-207ENST00000567806 FHAD1B1AJZ9 1412 aa33.24■■■□□ 2.91
GTF3C1-207ENST00000567806 ADAMTS12P58397 1594 aa33.22■■■□□ 2.91
GTF3C1-207ENST00000567806 NUP160Q12769 1436 aa33.19■■■□□ 2.9
GTF3C1-207ENST00000567806 ERICH3Q5RHP9 1530 aa33.17■■■□□ 2.9
GTF3C1-207ENST00000567806 CEP170Q5SW79 1584 aa33.13■■■□□ 2.89
GTF3C1-207ENST00000567806 ERCC6L2Q5T890 1561 aa33.08■■■□□ 2.89
GTF3C1-207ENST00000567806 JPH4Q96JJ6 628 aa32.99■■■□□ 2.87
GTF3C1-207ENST00000567806 SHROOM2Q13796 1616 aa32.97■■■□□ 2.87
GTF3C1-207ENST00000567806 PRG4Q92954 1404 aaPredicted RBP32.94■■■□□ 2.86
GTF3C1-207ENST00000567806 IGF1RP08069 1367 aa32.83■■■□□ 2.85
GTF3C1-207ENST00000567806 KIF27Q86VH2 1401 aa32.82■■■□□ 2.84
Retrieved 100 of 20,778 RNA–protein pairs in 168 ms