RNA–Protein interactions for RNA: ENST00000567720.5

COMMD4-220, Transcript of COMM domain containing 4, humanhuman

TSL 4

Gene COMMD4, Length 544 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-220ENST00000567720 NISCHQ9Y2I1 1504 aa41.9■■■■■ 4.3
COMMD4-220ENST00000567720 CCDC180Q9P1Z9 1646 aa37.32■■■■□ 3.57
COMMD4-220ENST00000567720 ABCC9O60706 1549 aa36.18■■■■□ 3.38
COMMD4-220ENST00000567720 ZCCHC6Q5VYS8 1495 aaKnown RBP35.01■■■■□ 3.19
COMMD4-220ENST00000567720 RB1CC1Q8TDY2 1594 aa34.93■■■■□ 3.18
COMMD4-220ENST00000567720 NACADO15069 1562 aa34.91■■■■□ 3.18
COMMD4-220ENST00000567720 MYO15BQ96JP2 1530 aa34.76■■■■□ 3.15
COMMD4-220ENST00000567720 DCAF1Q9Y4B6 1507 aa34.7■■■■□ 3.14
COMMD4-220ENST00000567720 DCAF8L2P0C7V8 631 aa34.65■■■■□ 3.14
COMMD4-220ENST00000567720 UNC13AQ9UPW8 1703 aa34.37■■■■□ 3.09
COMMD4-220ENST00000567720 SCRIBQ14160 1630 aa34.03■■■■□ 3.04
COMMD4-220ENST00000567720 BICRAQ9NZM4 1560 aa33.94■■■■□ 3.02
COMMD4-220ENST00000567720 PABPN1Q86U42 306 aaKnown RBP eCLIP33.7■■■□□ 2.99
COMMD4-220ENST00000567720 SHROOM4Q9ULL8 1493 aa33.53■■■□□ 2.96
COMMD4-220ENST00000567720 EIF4G1Q04637 1599 aaKnown RBP32.99■■■□□ 2.87
COMMD4-220ENST00000567720 DNAJC5BQ9UF47 199 aa32.93■■■□□ 2.86
COMMD4-220ENST00000567720 CC2D2AQ9P2K1 1620 aa32.81■■■□□ 2.84
COMMD4-220ENST00000567720 CECR2Q9BXF3 1484 aa32.61■■■□□ 2.81
COMMD4-220ENST00000567720 SMARCA4P51532 1647 aa32.56■■■□□ 2.8
COMMD4-220ENST00000567720 BAZ1AQ9NRL2 1556 aaPredicted RBP32.48■■■□□ 2.79
COMMD4-220ENST00000567720 MROH2BQ7Z745 1585 aa32.32■■■□□ 2.76
COMMD4-220ENST00000567720 SMARCA2P51531 1590 aa32.24■■■□□ 2.75
COMMD4-220ENST00000567720 PEG3Q9GZU2 1588 aa32.23■■■□□ 2.75
COMMD4-220ENST00000567720 ATAD2BQ9ULI0 1458 aa32.23■■■□□ 2.75
COMMD4-220ENST00000567720 NCAPD3P42695 1498 aa32.15■■■□□ 2.74
COMMD4-220ENST00000567720 HMGXB3Q12766 1538 aa32.13■■■□□ 2.73
COMMD4-220ENST00000567720 WIZO95785 1651 aa32.05■■■□□ 2.72
COMMD4-220ENST00000567720 BAZ1BQ9UIG0 1483 aaKnown RBP31.98■■■□□ 2.71
COMMD4-220ENST00000567720 RSF1Q96T23 1441 aaPredicted RBP31.93■■■□□ 2.7
COMMD4-220ENST00000567720 TOP2AP11388 1531 aaKnown RBP31.69■■■□□ 2.66
COMMD4-220ENST00000567720 NESP48681 1621 aa31.4■■■□□ 2.62
COMMD4-220ENST00000567720 LAMC3Q9Y6N6 1575 aa31.37■■■□□ 2.61
COMMD4-220ENST00000567720 CCDC88BA6NC98 1476 aa31.21■■■□□ 2.59
COMMD4-220ENST00000567720 KIF21AQ7Z4S6 1674 aa31.19■■■□□ 2.58
COMMD4-220ENST00000567720 CADPSQ9ULU8 1353 aa31.17■■■□□ 2.58
COMMD4-220ENST00000567720 PRDM2Q13029 1718 aa31.16■■■□□ 2.58
COMMD4-220ENST00000567720 ERCC6Q03468 1493 aa31.14■■■□□ 2.57
COMMD4-220ENST00000567720 SUPT5HO00267 1087 aaKnown RBP31.11■■■□□ 2.57
COMMD4-220ENST00000567720 CFTRP13569 1480 aa31.1■■■□□ 2.57
COMMD4-220ENST00000567720 THOC2Q8NI27 1593 aaKnown RBP31.01■■■□□ 2.56
COMMD4-220ENST00000567720 PDS5BQ9NTI5 1447 aa31.01■■■□□ 2.55
COMMD4-220ENST00000567720 FANCD2Q9BXW9 1451 aa30.89■■■□□ 2.54
COMMD4-220ENST00000567720 CEP164Q9UPV0 1460 aa30.86■■■□□ 2.53
COMMD4-220ENST00000567720 CUX2O14529 1486 aa30.78■■■□□ 2.52
COMMD4-220ENST00000567720 MRC2Q9UBG0 1479 aa30.78■■■□□ 2.52
COMMD4-220ENST00000567720 WDR62O43379 1518 aa30.74■■■□□ 2.51
COMMD4-220ENST00000567720 URB2Q14146 1524 aaKnown RBP30.63■■■□□ 2.49
COMMD4-220ENST00000567720 DNMBPQ6XZF7 1577 aa30.48■■■□□ 2.47
COMMD4-220ENST00000567720 TOPBP1Q92547 1522 aa30.46■■■□□ 2.47
COMMD4-220ENST00000567720 ABCC8Q09428 1581 aa30.37■■■□□ 2.45
COMMD4-220ENST00000567720 CUX1P39880 1505 aa30.32■■■□□ 2.44
COMMD4-220ENST00000567720 POLA1P09884 1462 aaPredicted RBP30.21■■■□□ 2.43
COMMD4-220ENST00000567720 TARBP1Q13395 1621 aaKnown RBP30.19■■■□□ 2.42
COMMD4-220ENST00000567720 BIVM-ERCC5R4GMW8 1640 aa30.19■■■□□ 2.42
COMMD4-220ENST00000567720 SYNJ1O43426 1573 aa30.17■■■□□ 2.42
COMMD4-220ENST00000567720 FGD5Q6ZNL6 1462 aa30.17■■■□□ 2.42
COMMD4-220ENST00000567720 IFT140Q96RY7 1462 aa30.17■■■□□ 2.42
COMMD4-220ENST00000567720 TOP2BQ02880 1626 aa30.13■■■□□ 2.41
COMMD4-220ENST00000567720 WRNQ14191 1432 aaPredicted RBP eCLIP30.1■■■□□ 2.41
COMMD4-220ENST00000567720 WDR97A6NE52 1622 aa30.1■■■□□ 2.41
COMMD4-220ENST00000567720 EIF4G3O43432 1585 aaKnown RBP30.07■■■□□ 2.4
COMMD4-220ENST00000567720 ZNF608Q9ULD9 1512 aaPredicted RBP30.06■■■□□ 2.4
COMMD4-220ENST00000567720 RAD54L2Q9Y4B4 1467 aa30.04■■■□□ 2.4
COMMD4-220ENST00000567720 SOGA1O94964 1423 aa29.96■■■□□ 2.39
COMMD4-220ENST00000567720 ABCA10Q8WWZ4 1543 aa29.86■■■□□ 2.37
COMMD4-220ENST00000567720 ABCA5Q8WWZ7 1642 aa29.85■■■□□ 2.37
COMMD4-220ENST00000567720 AQRO60306 1485 aaKnown RBP eCLIP29.85■■■□□ 2.37
COMMD4-220ENST00000567720 PBRM1Q86U86 1689 aa29.84■■■□□ 2.37
COMMD4-220ENST00000567720 TDRD9Q8NDG6 1382 aaKnown RBP29.77■■■□□ 2.36
COMMD4-220ENST00000567720 CHD1O14646 1710 aa29.71■■■□□ 2.35
COMMD4-220ENST00000567720 GAPVD1Q14C86 1478 aa29.69■■■□□ 2.34
COMMD4-220ENST00000567720 GRIN2BQ13224 1484 aa29.66■■■□□ 2.34
COMMD4-220ENST00000567720 SNAPC4Q5SXM2 1469 aa29.66■■■□□ 2.34
COMMD4-220ENST00000567720 MAGI1Q96QZ7 1491 aaPredicted RBP29.6■■■□□ 2.33
COMMD4-220ENST00000567720 ADAMTS12P58397 1594 aa29.56■■■□□ 2.32
COMMD4-220ENST00000567720 ERICH3Q5RHP9 1530 aa29.53■■■□□ 2.32
COMMD4-220ENST00000567720 SYNJ2O15056 1496 aa29.47■■■□□ 2.31
COMMD4-220ENST00000567720 DNAJC5Q9H3Z4 198 aa29.45■■■□□ 2.31
COMMD4-220ENST00000567720 KIF27Q86VH2 1401 aa29.43■■■□□ 2.3
COMMD4-220ENST00000567720 CUL7Q14999 1698 aa29.37■■■□□ 2.29
COMMD4-220ENST00000567720 TRIM41Q8WV44 630 aa29.34■■■□□ 2.29
COMMD4-220ENST00000567720 OSCARQ8IYS5 282 aa29.33■■■□□ 2.29
COMMD4-220ENST00000567720 FHAD1B1AJZ9 1412 aa29.33■■■□□ 2.29
COMMD4-220ENST00000567720 GRIN2AQ12879 1464 aa29.33■■■□□ 2.29
COMMD4-220ENST00000567720 FBLN2P98095 1184 aa29.31■■■□□ 2.28
COMMD4-220ENST00000567720 CLASP1Q7Z460 1538 aa29.3■■■□□ 2.28
COMMD4-220ENST00000567720 RUSC2Q8N2Y8 1516 aa29.28■■■□□ 2.28
COMMD4-220ENST00000567720 CHMP7Q8WUX9 453 aaPredicted RBP29.26■■■□□ 2.27
COMMD4-220ENST00000567720 CEP170Q5SW79 1584 aa29.26■■■□□ 2.27
COMMD4-220ENST00000567720 IGF1RP08069 1367 aa29.24■■■□□ 2.27
COMMD4-220ENST00000567720 NUP160Q12769 1436 aa29.18■■■□□ 2.26
COMMD4-220ENST00000567720 CHIC1Q5VXU3 224 aa29.15■■■□□ 2.26
COMMD4-220ENST00000567720 RIMBP3CA6NJZ7 1639 aa29.14■■■□□ 2.26
COMMD4-220ENST00000567720 RIMBP3BA6NNM3 1639 aa29.14■■■□□ 2.26
COMMD4-220ENST00000567720 RIMBP3Q9UFD9 1639 aa29.14■■■□□ 2.26
COMMD4-220ENST00000567720 ARHGEF11O15085 1522 aa29.1■■■□□ 2.25
COMMD4-220ENST00000567720 CARMIL1Q5VZK9 1371 aa29.08■■■□□ 2.25
COMMD4-220ENST00000567720 SHROOM2Q13796 1616 aa29.05■■■□□ 2.24
COMMD4-220ENST00000567720 RAPGEF2Q9Y4G8 1499 aa28.98■■■□□ 2.23
COMMD4-220ENST00000567720 EEA1Q15075 1411 aa28.98■■■□□ 2.23
Retrieved 100 of 20,778 RNA–protein pairs in 99.8 ms