RNA–Protein interactions for RNA: ENST00000567674.1

CDH3-206, Transcript of cadherin 3, humanhuman

TSL 3

Gene CDH3, Length 892 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-206ENST00000567674 NISCHQ9Y2I1 1504 aa27.55■■■□□ 2
CDH3-206ENST00000567674 CCDC180Q9P1Z9 1646 aa24.63■■□□□ 1.53
CDH3-206ENST00000567674 ABCC9O60706 1549 aa24.61■■□□□ 1.53
CDH3-206ENST00000567674 DNAJC5BQ9UF47 199 aa23.72■■□□□ 1.39
CDH3-206ENST00000567674 RB1CC1Q8TDY2 1594 aa23.31■■□□□ 1.32
CDH3-206ENST00000567674 NACADO15069 1562 aa23.27■■□□□ 1.32
CDH3-206ENST00000567674 MYO15BQ96JP2 1530 aa23.18■■□□□ 1.3
CDH3-206ENST00000567674 DCAF8L2P0C7V8 631 aa22.95■■□□□ 1.26
CDH3-206ENST00000567674 DCAF1Q9Y4B6 1507 aa22.94■■□□□ 1.26
CDH3-206ENST00000567674 ZCCHC6Q5VYS8 1495 aaKnown RBP22.88■■□□□ 1.25
CDH3-206ENST00000567674 PABPN1Q86U42 306 aaKnown RBP eCLIP22.77■■□□□ 1.24
CDH3-206ENST00000567674 UNC13AQ9UPW8 1703 aa22.57■■□□□ 1.2
CDH3-206ENST00000567674 SHROOM4Q9ULL8 1493 aa22.54■■□□□ 1.2
CDH3-206ENST00000567674 BICRAQ9NZM4 1560 aa22.5■■□□□ 1.19
CDH3-206ENST00000567674 DNAJC5Q9H3Z4 198 aa22.4■■□□□ 1.18
CDH3-206ENST00000567674 CECR2Q9BXF3 1484 aa22.28■■□□□ 1.16
CDH3-206ENST00000567674 SCRIBQ14160 1630 aa22.24■■□□□ 1.15
CDH3-206ENST00000567674 CC2D2AQ9P2K1 1620 aa22.2■■□□□ 1.15
CDH3-206ENST00000567674 EIF4G1Q04637 1599 aaKnown RBP22■■□□□ 1.11
CDH3-206ENST00000567674 CUX2O14529 1486 aa21.59■■□□□ 1.05
CDH3-206ENST00000567674 NCAPD3P42695 1498 aa21.49■■□□□ 1.03
CDH3-206ENST00000567674 BAZ1AQ9NRL2 1556 aaPredicted RBP21.4■■□□□ 1.02
CDH3-206ENST00000567674 SMARCA2P51531 1590 aa21.39■■□□□ 1.01
CDH3-206ENST00000567674 ATAD2BQ9ULI0 1458 aa21.37■■□□□ 1.01
CDH3-206ENST00000567674 SMARCA4P51532 1647 aa21.37■■□□□ 1.01
CDH3-206ENST00000567674 ERCC6Q03468 1493 aa21.34■■□□□ 1.01
CDH3-206ENST00000567674 HMGXB3Q12766 1538 aa21.32■■□□□ 1
CDH3-206ENST00000567674 PEG3Q9GZU2 1588 aa21.3■■□□□ 1
CDH3-206ENST00000567674 BAZ1BQ9UIG0 1483 aaKnown RBP21.16■□□□□ 0.98
CDH3-206ENST00000567674 MROH2BQ7Z745 1585 aa21.12■□□□□ 0.97
CDH3-206ENST00000567674 TRIM41Q8WV44 630 aa21.05■□□□□ 0.96
CDH3-206ENST00000567674 LAMC3Q9Y6N6 1575 aa20.93■□□□□ 0.94
CDH3-206ENST00000567674 NESP48681 1621 aa20.91■□□□□ 0.94
CDH3-206ENST00000567674 THOC2Q8NI27 1593 aaKnown RBP20.89■□□□□ 0.93
CDH3-206ENST00000567674 RSF1Q96T23 1441 aaPredicted RBP20.87■□□□□ 0.93
CDH3-206ENST00000567674 PDS5BQ9NTI5 1447 aa20.83■□□□□ 0.93
CDH3-206ENST00000567674 WIZO95785 1651 aa20.83■□□□□ 0.92
CDH3-206ENST00000567674 CADPSQ9ULU8 1353 aa20.82■□□□□ 0.92
CDH3-206ENST00000567674 TOP2AP11388 1531 aaKnown RBP20.72■□□□□ 0.91
CDH3-206ENST00000567674 CFTRP13569 1480 aa20.63■□□□□ 0.89
CDH3-206ENST00000567674 KIF21AQ7Z4S6 1674 aa20.61■□□□□ 0.89
CDH3-206ENST00000567674 MRC2Q9UBG0 1479 aa20.53■□□□□ 0.88
CDH3-206ENST00000567674 CEP164Q9UPV0 1460 aa20.5■□□□□ 0.87
CDH3-206ENST00000567674 FANCD2Q9BXW9 1451 aa20.5■□□□□ 0.87
CDH3-206ENST00000567674 WDR62O43379 1518 aa20.48■□□□□ 0.87
CDH3-206ENST00000567674 OSCARQ8IYS5 282 aa20.47■□□□□ 0.87
CDH3-206ENST00000567674 CCDC88BA6NC98 1476 aa20.45■□□□□ 0.86
CDH3-206ENST00000567674 PRDM2Q13029 1718 aa20.36■□□□□ 0.85
CDH3-206ENST00000567674 ABCC8Q09428 1581 aa20.31■□□□□ 0.84
CDH3-206ENST00000567674 URB2Q14146 1524 aaKnown RBP20.25■□□□□ 0.83
CDH3-206ENST00000567674 RIMBP3CA6NJZ7 1639 aa20.24■□□□□ 0.83
CDH3-206ENST00000567674 RIMBP3BA6NNM3 1639 aa20.24■□□□□ 0.83
CDH3-206ENST00000567674 RIMBP3Q9UFD9 1639 aa20.24■□□□□ 0.83
CDH3-206ENST00000567674 IFT140Q96RY7 1462 aa20.15■□□□□ 0.82
CDH3-206ENST00000567674 TOPBP1Q92547 1522 aa20.12■□□□□ 0.81
CDH3-206ENST00000567674 ARHGEF11O15085 1522 aa20.12■□□□□ 0.81
CDH3-206ENST00000567674 DNMBPQ6XZF7 1577 aa20.1■□□□□ 0.81
CDH3-206ENST00000567674 TRHP20396 242 aaPredicted RBP20.02■□□□□ 0.8
CDH3-206ENST00000567674 AEBP2Q6ZN18 517 aaPredicted RBP20.01■□□□□ 0.79
CDH3-206ENST00000567674 SUPT5HO00267 1087 aaKnown RBP20■□□□□ 0.79
CDH3-206ENST00000567674 CYB5RLQ6IPT4 315 aa20■□□□□ 0.79
CDH3-206ENST00000567674 WDR97A6NE52 1622 aa19.94■□□□□ 0.78
CDH3-206ENST00000567674 POLA1P09884 1462 aaPredicted RBP19.93■□□□□ 0.78
CDH3-206ENST00000567674 TARBP1Q13395 1621 aaKnown RBP19.92■□□□□ 0.78
CDH3-206ENST00000567674 ZNF608Q9ULD9 1512 aaPredicted RBP19.91■□□□□ 0.78
CDH3-206ENST00000567674 SOGA1O94964 1423 aa19.89■□□□□ 0.77
CDH3-206ENST00000567674 ARAP1Q96P48 1450 aa19.86■□□□□ 0.77
CDH3-206ENST00000567674 EIF4G3O43432 1585 aaKnown RBP19.84■□□□□ 0.77
CDH3-206ENST00000567674 CUX1P39880 1505 aa19.83■□□□□ 0.77
CDH3-206ENST00000567674 FGD5Q6ZNL6 1462 aa19.82■□□□□ 0.76
CDH3-206ENST00000567674 AQRO60306 1485 aaKnown RBP eCLIP19.8■□□□□ 0.76
CDH3-206ENST00000567674 RAD54L2Q9Y4B4 1467 aa19.77■□□□□ 0.76
CDH3-206ENST00000567674 TDRD9Q8NDG6 1382 aaKnown RBP19.72■□□□□ 0.75
CDH3-206ENST00000567674 ABCA10Q8WWZ4 1543 aa19.72■□□□□ 0.75
CDH3-206ENST00000567674 WRNQ14191 1432 aaPredicted RBP eCLIP19.72■□□□□ 0.75
CDH3-206ENST00000567674 GRIN2BQ13224 1484 aa19.72■□□□□ 0.75
CDH3-206ENST00000567674 MAGI1Q96QZ7 1491 aaPredicted RBP19.72■□□□□ 0.75
CDH3-206ENST00000567674 CHD1O14646 1710 aa19.69■□□□□ 0.74
CDH3-206ENST00000567674 TOP2BQ02880 1626 aa19.67■□□□□ 0.74
CDH3-206ENST00000567674 GAPVD1Q14C86 1478 aa19.65■□□□□ 0.74
CDH3-206ENST00000567674 BIVM-ERCC5R4GMW8 1640 aa19.65■□□□□ 0.74
CDH3-206ENST00000567674 FBLN2P98095 1184 aa19.63■□□□□ 0.73
CDH3-206ENST00000567674 CHMP7Q8WUX9 453 aaPredicted RBP19.62■□□□□ 0.73
CDH3-206ENST00000567674 SYNJ2O15056 1496 aa19.61■□□□□ 0.73
CDH3-206ENST00000567674 SNAPC4Q5SXM2 1469 aa19.61■□□□□ 0.73
CDH3-206ENST00000567674 ABCA5Q8WWZ7 1642 aa19.58■□□□□ 0.72
CDH3-206ENST00000567674 SYNJ1O43426 1573 aa19.54■□□□□ 0.72
CDH3-206ENST00000567674 CLASP1Q7Z460 1538 aa19.51■□□□□ 0.71
CDH3-206ENST00000567674 PBRM1Q86U86 1689 aa19.51■□□□□ 0.71
CDH3-206ENST00000567674 ERICH3Q5RHP9 1530 aa19.51■□□□□ 0.71
CDH3-206ENST00000567674 FHAD1B1AJZ9 1412 aa19.47■□□□□ 0.71
CDH3-206ENST00000567674 GRIN2AQ12879 1464 aa19.42■□□□□ 0.7
CDH3-206ENST00000567674 ADAMTS12P58397 1594 aa19.4■□□□□ 0.7
CDH3-206ENST00000567674 NUP160Q12769 1436 aa19.39■□□□□ 0.69
CDH3-206ENST00000567674 KIF27Q86VH2 1401 aa19.35■□□□□ 0.69
CDH3-206ENST00000567674 IGF1RP08069 1367 aa19.29■□□□□ 0.68
CDH3-206ENST00000567674 CEP170Q5SW79 1584 aa19.25■□□□□ 0.67
CDH3-206ENST00000567674 SHROOM2Q13796 1616 aa19.23■□□□□ 0.67
CDH3-206ENST00000567674 CUL7Q14999 1698 aa19.23■□□□□ 0.67
CDH3-206ENST00000567674 ILDR1Q86SU0 546 aaPredicted RBP19.21■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms