RNA–Protein interactions for RNA: ENST00000567638.1

SCAMP2-209, Transcript of secretory carrier membrane protein 2, humanhuman

TSL 2

Gene SCAMP2, Length 678 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAMP2-209ENST00000567638 NISCHQ9Y2I1 1504 aa37.63■■■■□ 3.61
SCAMP2-209ENST00000567638 CCDC180Q9P1Z9 1646 aa33.8■■■■□ 3
SCAMP2-209ENST00000567638 ABCC9O60706 1549 aa33.48■■■□□ 2.95
SCAMP2-209ENST00000567638 RB1CC1Q8TDY2 1594 aa32.02■■■□□ 2.72
SCAMP2-209ENST00000567638 NACADO15069 1562 aa31.83■■■□□ 2.69
SCAMP2-209ENST00000567638 DCAF8L2P0C7V8 631 aa31.54■■■□□ 2.64
SCAMP2-209ENST00000567638 MYO15BQ96JP2 1530 aa31.46■■■□□ 2.63
SCAMP2-209ENST00000567638 UNC13AQ9UPW8 1703 aa31.41■■■□□ 2.62
SCAMP2-209ENST00000567638 ZCCHC6Q5VYS8 1495 aaKnown RBP31.25■■■□□ 2.59
SCAMP2-209ENST00000567638 DNAJC5BQ9UF47 199 aa31.16■■■□□ 2.58
SCAMP2-209ENST00000567638 DCAF1Q9Y4B6 1507 aa31.13■■■□□ 2.57
SCAMP2-209ENST00000567638 PABPN1Q86U42 306 aaKnown RBP eCLIP31.12■■■□□ 2.57
SCAMP2-209ENST00000567638 BICRAQ9NZM4 1560 aa31.08■■■□□ 2.57
SCAMP2-209ENST00000567638 SCRIBQ14160 1630 aa30.74■■■□□ 2.51
SCAMP2-209ENST00000567638 SHROOM4Q9ULL8 1493 aa30.7■■■□□ 2.5
SCAMP2-209ENST00000567638 CC2D2AQ9P2K1 1620 aa30.31■■■□□ 2.44
SCAMP2-209ENST00000567638 EIF4G1Q04637 1599 aaKnown RBP30.29■■■□□ 2.44
SCAMP2-209ENST00000567638 CECR2Q9BXF3 1484 aa30.14■■■□□ 2.42
SCAMP2-209ENST00000567638 SMARCA4P51532 1647 aa29.36■■■□□ 2.29
SCAMP2-209ENST00000567638 NCAPD3P42695 1498 aa29.34■■■□□ 2.29
SCAMP2-209ENST00000567638 ATAD2BQ9ULI0 1458 aa29.28■■■□□ 2.28
SCAMP2-209ENST00000567638 SMARCA2P51531 1590 aa29.25■■■□□ 2.27
SCAMP2-209ENST00000567638 BAZ1AQ9NRL2 1556 aaPredicted RBP29.22■■■□□ 2.27
SCAMP2-209ENST00000567638 HMGXB3Q12766 1538 aa29.2■■■□□ 2.27
SCAMP2-209ENST00000567638 PEG3Q9GZU2 1588 aa29.08■■■□□ 2.25
SCAMP2-209ENST00000567638 BAZ1BQ9UIG0 1483 aaKnown RBP29.02■■■□□ 2.24
SCAMP2-209ENST00000567638 MROH2BQ7Z745 1585 aa29■■■□□ 2.23
SCAMP2-209ENST00000567638 ERCC6Q03468 1493 aa28.9■■■□□ 2.22
SCAMP2-209ENST00000567638 NESP48681 1621 aa28.82■■■□□ 2.2
SCAMP2-209ENST00000567638 CUX2O14529 1486 aa28.81■■■□□ 2.2
SCAMP2-209ENST00000567638 LAMC3Q9Y6N6 1575 aa28.71■■■□□ 2.19
SCAMP2-209ENST00000567638 WIZO95785 1651 aa28.7■■■□□ 2.19
SCAMP2-209ENST00000567638 THOC2Q8NI27 1593 aaKnown RBP28.58■■■□□ 2.17
SCAMP2-209ENST00000567638 KIF21AQ7Z4S6 1674 aa28.56■■■□□ 2.16
SCAMP2-209ENST00000567638 DNAJC5Q9H3Z4 198 aa28.49■■■□□ 2.15
SCAMP2-209ENST00000567638 PDS5BQ9NTI5 1447 aa28.46■■■□□ 2.15
SCAMP2-209ENST00000567638 CADPSQ9ULU8 1353 aa28.43■■■□□ 2.14
SCAMP2-209ENST00000567638 RSF1Q96T23 1441 aaPredicted RBP28.43■■■□□ 2.14
SCAMP2-209ENST00000567638 TOP2AP11388 1531 aaKnown RBP28.34■■■□□ 2.13
SCAMP2-209ENST00000567638 MRC2Q9UBG0 1479 aa28.24■■■□□ 2.11
SCAMP2-209ENST00000567638 WDR62O43379 1518 aa28.19■■■□□ 2.1
SCAMP2-209ENST00000567638 CFTRP13569 1480 aa28.18■■■□□ 2.1
SCAMP2-209ENST00000567638 CEP164Q9UPV0 1460 aa28.17■■■□□ 2.1
SCAMP2-209ENST00000567638 FANCD2Q9BXW9 1451 aa28.14■■■□□ 2.09
SCAMP2-209ENST00000567638 PRDM2Q13029 1718 aa28.09■■■□□ 2.09
SCAMP2-209ENST00000567638 CCDC88BA6NC98 1476 aa27.96■■■□□ 2.07
SCAMP2-209ENST00000567638 URB2Q14146 1524 aaKnown RBP27.91■■■□□ 2.06
SCAMP2-209ENST00000567638 TOPBP1Q92547 1522 aa27.65■■■□□ 2.02
SCAMP2-209ENST00000567638 ABCC8Q09428 1581 aa27.6■■■□□ 2.01
SCAMP2-209ENST00000567638 DNMBPQ6XZF7 1577 aa27.6■■■□□ 2.01
SCAMP2-209ENST00000567638 IFT140Q96RY7 1462 aa27.58■■■□□ 2.01
SCAMP2-209ENST00000567638 ZNF608Q9ULD9 1512 aaPredicted RBP27.51■■■□□ 2
SCAMP2-209ENST00000567638 EIF4G3O43432 1585 aaKnown RBP27.45■■□□□ 1.99
SCAMP2-209ENST00000567638 OSCARQ8IYS5 282 aa27.43■■□□□ 1.98
SCAMP2-209ENST00000567638 TARBP1Q13395 1621 aaKnown RBP27.42■■□□□ 1.98
SCAMP2-209ENST00000567638 POLA1P09884 1462 aaPredicted RBP27.37■■□□□ 1.97
SCAMP2-209ENST00000567638 TRIM41Q8WV44 630 aa27.3■■□□□ 1.96
SCAMP2-209ENST00000567638 AQRO60306 1485 aaKnown RBP eCLIP27.25■■□□□ 1.957e-8■■■■□ 21.3
SCAMP2-209ENST00000567638 CHD1O14646 1710 aa27.25■■□□□ 1.95
SCAMP2-209ENST00000567638 CUX1P39880 1505 aa27.24■■□□□ 1.95
SCAMP2-209ENST00000567638 SUPT5HO00267 1087 aaKnown RBP27.23■■□□□ 1.95
SCAMP2-209ENST00000567638 FGD5Q6ZNL6 1462 aa27.23■■□□□ 1.95
SCAMP2-209ENST00000567638 RAD54L2Q9Y4B4 1467 aa27.23■■□□□ 1.95
SCAMP2-209ENST00000567638 SOGA1O94964 1423 aa27.2■■□□□ 1.94
SCAMP2-209ENST00000567638 WDR97A6NE52 1622 aa27.19■■□□□ 1.94
SCAMP2-209ENST00000567638 RIMBP3CA6NJZ7 1639 aa27.19■■□□□ 1.94
SCAMP2-209ENST00000567638 RIMBP3BA6NNM3 1639 aa27.19■■□□□ 1.94
SCAMP2-209ENST00000567638 RIMBP3Q9UFD9 1639 aa27.19■■□□□ 1.94
SCAMP2-209ENST00000567638 TDRD9Q8NDG6 1382 aaKnown RBP27.11■■□□□ 1.93
SCAMP2-209ENST00000567638 ARHGEF11O15085 1522 aa27.09■■□□□ 1.93
SCAMP2-209ENST00000567638 SNAPC4Q5SXM2 1469 aa27.03■■□□□ 1.92
SCAMP2-209ENST00000567638 PBRM1Q86U86 1689 aa27.01■■□□□ 1.91
SCAMP2-209ENST00000567638 FBLN2P98095 1184 aa26.99■■□□□ 1.91
SCAMP2-209ENST00000567638 GRIN2BQ13224 1484 aa26.98■■□□□ 1.91
SCAMP2-209ENST00000567638 MAGI1Q96QZ7 1491 aaPredicted RBP26.98■■□□□ 1.91
SCAMP2-209ENST00000567638 ABCA5Q8WWZ7 1642 aa26.94■■□□□ 1.9
SCAMP2-209ENST00000567638 ABCA10Q8WWZ4 1543 aa26.93■■□□□ 1.9
SCAMP2-209ENST00000567638 BIVM-ERCC5R4GMW8 1640 aa26.93■■□□□ 1.9
SCAMP2-209ENST00000567638 GAPVD1Q14C86 1478 aa26.9■■□□□ 1.9
SCAMP2-209ENST00000567638 TOP2BQ02880 1626 aa26.89■■□□□ 1.9
SCAMP2-209ENST00000567638 SYNJ1O43426 1573 aa26.88■■□□□ 1.89
SCAMP2-209ENST00000567638 CLASP1Q7Z460 1538 aa26.88■■□□□ 1.89
SCAMP2-209ENST00000567638 SYNJ2O15056 1496 aa26.87■■□□□ 1.89
SCAMP2-209ENST00000567638 CHMP7Q8WUX9 453 aaPredicted RBP26.84■■□□□ 1.89
SCAMP2-209ENST00000567638 WRNQ14191 1432 aaPredicted RBP eCLIP26.82■■□□□ 1.88
SCAMP2-209ENST00000567638 ARAP1Q96P48 1450 aa26.82■■□□□ 1.88
SCAMP2-209ENST00000567638 CYB5RLQ6IPT4 315 aa26.77■■□□□ 1.88
SCAMP2-209ENST00000567638 ADAMTS12P58397 1594 aa26.71■■□□□ 1.87
SCAMP2-209ENST00000567638 GRIN2AQ12879 1464 aa26.65■■□□□ 1.86
SCAMP2-209ENST00000567638 ERICH3Q5RHP9 1530 aa26.61■■□□□ 1.85
SCAMP2-209ENST00000567638 CEP170Q5SW79 1584 aa26.57■■□□□ 1.84
SCAMP2-209ENST00000567638 FHAD1B1AJZ9 1412 aa26.56■■□□□ 1.84
SCAMP2-209ENST00000567638 NUP160Q12769 1436 aa26.54■■□□□ 1.84
SCAMP2-209ENST00000567638 SHROOM2Q13796 1616 aa26.48■■□□□ 1.83
SCAMP2-209ENST00000567638 ERCC6L2Q5T890 1561 aa26.46■■□□□ 1.83
SCAMP2-209ENST00000567638 TRHP20396 242 aaPredicted RBP26.41■■□□□ 1.82
SCAMP2-209ENST00000567638 RUSC2Q8N2Y8 1516 aa26.34■■□□□ 1.81
SCAMP2-209ENST00000567638 CUL7Q14999 1698 aa26.31■■□□□ 1.8
SCAMP2-209ENST00000567638 KIF27Q86VH2 1401 aa26.3■■□□□ 1.8
SCAMP2-209ENST00000567638 PRG4Q92954 1404 aaPredicted RBP26.24■■□□□ 1.79
Retrieved 100 of 20,778 RNA–protein pairs in 7.1 ms