RNA–Protein interactions for RNA: ENST00000567406.5

CDR2-206, Transcript of cerebellar degeneration related protein 2, humanhuman

TSL 4

Gene CDR2, Length 567 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDR2-206ENST00000567406 NISCHQ9Y2I1 1504 aa38.14■■■■□ 3.7
CDR2-206ENST00000567406 ABCC9O60706 1549 aa34.23■■■■□ 3.07
CDR2-206ENST00000567406 CCDC180Q9P1Z9 1646 aa34.08■■■■□ 3.05
CDR2-206ENST00000567406 RB1CC1Q8TDY2 1594 aa32.47■■■□□ 2.79
CDR2-206ENST00000567406 DCAF8L2P0C7V8 631 aa32.38■■■□□ 2.77
CDR2-206ENST00000567406 NACADO15069 1562 aa32.24■■■□□ 2.75
CDR2-206ENST00000567406 DNAJC5BQ9UF47 199 aa32.13■■■□□ 2.73
CDR2-206ENST00000567406 PABPN1Q86U42 306 aaKnown RBP eCLIP31.97■■■□□ 2.71
CDR2-206ENST00000567406 UNC13AQ9UPW8 1703 aa31.79■■■□□ 2.68
CDR2-206ENST00000567406 MYO15BQ96JP2 1530 aa31.75■■■□□ 2.67
CDR2-206ENST00000567406 ZCCHC6Q5VYS8 1495 aaKnown RBP31.59■■■□□ 2.65
CDR2-206ENST00000567406 BICRAQ9NZM4 1560 aa31.58■■■□□ 2.65
CDR2-206ENST00000567406 DCAF1Q9Y4B6 1507 aa31.39■■■□□ 2.62
CDR2-206ENST00000567406 SCRIBQ14160 1630 aa31.24■■■□□ 2.59
CDR2-206ENST00000567406 SHROOM4Q9ULL8 1493 aa30.97■■■□□ 2.55
CDR2-206ENST00000567406 CC2D2AQ9P2K1 1620 aa30.86■■■□□ 2.53
CDR2-206ENST00000567406 EIF4G1Q04637 1599 aaKnown RBP30.79■■■□□ 2.52
CDR2-206ENST00000567406 CECR2Q9BXF3 1484 aa30.77■■■□□ 2.52
CDR2-206ENST00000567406 NCAPD3P42695 1498 aa29.8■■■□□ 2.36
CDR2-206ENST00000567406 ATAD2BQ9ULI0 1458 aa29.77■■■□□ 2.36
CDR2-206ENST00000567406 SMARCA4P51532 1647 aa29.73■■■□□ 2.35
CDR2-206ENST00000567406 SMARCA2P51531 1590 aa29.61■■■□□ 2.33
CDR2-206ENST00000567406 BAZ1AQ9NRL2 1556 aaPredicted RBP29.56■■■□□ 2.32
CDR2-206ENST00000567406 HMGXB3Q12766 1538 aa29.54■■■□□ 2.32
CDR2-206ENST00000567406 ERCC6Q03468 1493 aa29.49■■■□□ 2.31
CDR2-206ENST00000567406 BAZ1BQ9UIG0 1483 aaKnown RBP29.47■■■□□ 2.31
CDR2-206ENST00000567406 MROH2BQ7Z745 1585 aa29.45■■■□□ 2.31
CDR2-206ENST00000567406 NESP48681 1621 aa29.44■■■□□ 2.3
CDR2-206ENST00000567406 PEG3Q9GZU2 1588 aa29.37■■■□□ 2.29
CDR2-206ENST00000567406 DNAJC5Q9H3Z4 198 aa29.34■■■□□ 2.29
CDR2-206ENST00000567406 CUX2O14529 1486 aa29.33■■■□□ 2.29
CDR2-206ENST00000567406 WIZO95785 1651 aa29.11■■■□□ 2.25
CDR2-206ENST00000567406 LAMC3Q9Y6N6 1575 aa29.09■■■□□ 2.25
CDR2-206ENST00000567406 THOC2Q8NI27 1593 aaKnown RBP29.01■■■□□ 2.24
CDR2-206ENST00000567406 KIF21AQ7Z4S6 1674 aa28.99■■■□□ 2.23
CDR2-206ENST00000567406 PDS5BQ9NTI5 1447 aa28.95■■■□□ 2.23
CDR2-206ENST00000567406 CADPSQ9ULU8 1353 aa28.94■■■□□ 2.22
CDR2-206ENST00000567406 RSF1Q96T23 1441 aaPredicted RBP28.86■■■□□ 2.21
CDR2-206ENST00000567406 MRC2Q9UBG0 1479 aa28.72■■■□□ 2.19
CDR2-206ENST00000567406 TOP2AP11388 1531 aaKnown RBP28.66■■■□□ 2.18
CDR2-206ENST00000567406 FANCD2Q9BXW9 1451 aa28.62■■■□□ 2.17
CDR2-206ENST00000567406 CEP164Q9UPV0 1460 aa28.61■■■□□ 2.17
CDR2-206ENST00000567406 WDR62O43379 1518 aa28.61■■■□□ 2.17
CDR2-206ENST00000567406 CFTRP13569 1480 aa28.59■■■□□ 2.17
CDR2-206ENST00000567406 CCDC88BA6NC98 1476 aa28.41■■■□□ 2.14
CDR2-206ENST00000567406 URB2Q14146 1524 aaKnown RBP28.4■■■□□ 2.14
CDR2-206ENST00000567406 PRDM2Q13029 1718 aa28.25■■■□□ 2.11
CDR2-206ENST00000567406 TRIM41Q8WV44 630 aa28.2■■■□□ 2.1
CDR2-206ENST00000567406 OSCARQ8IYS5 282 aa28.1■■■□□ 2.09
CDR2-206ENST00000567406 TOPBP1Q92547 1522 aa28.08■■■□□ 2.09
CDR2-206ENST00000567406 ZNF608Q9ULD9 1512 aaPredicted RBP28.08■■■□□ 2.09
CDR2-206ENST00000567406 IFT140Q96RY7 1462 aa28.02■■■□□ 2.08
CDR2-206ENST00000567406 DNMBPQ6XZF7 1577 aa27.94■■■□□ 2.06
CDR2-206ENST00000567406 ABCC8Q09428 1581 aa27.93■■■□□ 2.06
CDR2-206ENST00000567406 AQRO60306 1485 aaKnown RBP eCLIP27.85■■■□□ 2.054e-10■■■□□ 17.2
CDR2-206ENST00000567406 EIF4G3O43432 1585 aaKnown RBP27.85■■■□□ 2.05
CDR2-206ENST00000567406 POLA1P09884 1462 aaPredicted RBP27.81■■■□□ 2.04
CDR2-206ENST00000567406 TARBP1Q13395 1621 aaKnown RBP27.81■■■□□ 2.04
CDR2-206ENST00000567406 RAD54L2Q9Y4B4 1467 aa27.78■■■□□ 2.04
CDR2-206ENST00000567406 SUPT5HO00267 1087 aaKnown RBP27.78■■■□□ 2.04
CDR2-206ENST00000567406 RIMBP3CA6NJZ7 1639 aa27.71■■■□□ 2.03
CDR2-206ENST00000567406 RIMBP3BA6NNM3 1639 aa27.71■■■□□ 2.03
CDR2-206ENST00000567406 RIMBP3Q9UFD9 1639 aa27.71■■■□□ 2.03
CDR2-206ENST00000567406 SOGA1O94964 1423 aa27.71■■■□□ 2.03
CDR2-206ENST00000567406 FBLN2P98095 1184 aa27.7■■■□□ 2.02
CDR2-206ENST00000567406 TDRD9Q8NDG6 1382 aaKnown RBP27.7■■■□□ 2.02
CDR2-206ENST00000567406 FGD5Q6ZNL6 1462 aa27.65■■■□□ 2.02
CDR2-206ENST00000567406 CHD1O14646 1710 aa27.65■■■□□ 2.02
CDR2-206ENST00000567406 CUX1P39880 1505 aa27.65■■■□□ 2.02
CDR2-206ENST00000567406 ARHGEF11O15085 1522 aa27.62■■■□□ 2.01
CDR2-206ENST00000567406 SNAPC4Q5SXM2 1469 aa27.52■■■□□ 2
CDR2-206ENST00000567406 CYB5RLQ6IPT4 315 aa27.52■■■□□ 2
CDR2-206ENST00000567406 CHMP7Q8WUX9 453 aaPredicted RBP27.44■■□□□ 1.98
CDR2-206ENST00000567406 GRIN2BQ13224 1484 aa27.41■■□□□ 1.98
CDR2-206ENST00000567406 WDR97A6NE52 1622 aa27.4■■□□□ 1.98
CDR2-206ENST00000567406 ARAP1Q96P48 1450 aa27.38■■□□□ 1.97
CDR2-206ENST00000567406 MAGI1Q96QZ7 1491 aaPredicted RBP27.37■■□□□ 1.97
CDR2-206ENST00000567406 GAPVD1Q14C86 1478 aa27.34■■□□□ 1.97
CDR2-206ENST00000567406 SYNJ2O15056 1496 aa27.3■■□□□ 1.96
CDR2-206ENST00000567406 CLASP1Q7Z460 1538 aa27.3■■□□□ 1.96
CDR2-206ENST00000567406 ABCA10Q8WWZ4 1543 aa27.3■■□□□ 1.96
CDR2-206ENST00000567406 PBRM1Q86U86 1689 aa27.3■■□□□ 1.96
CDR2-206ENST00000567406 SYNJ1O43426 1573 aa27.27■■□□□ 1.96
CDR2-206ENST00000567406 ABCA5Q8WWZ7 1642 aa27.24■■□□□ 1.95
CDR2-206ENST00000567406 WRNQ14191 1432 aaPredicted RBP eCLIP27.22■■□□□ 1.95
CDR2-206ENST00000567406 TRHP20396 242 aaPredicted RBP27.2■■□□□ 1.94
CDR2-206ENST00000567406 TOP2BQ02880 1626 aa27.16■■□□□ 1.94
CDR2-206ENST00000567406 BIVM-ERCC5R4GMW8 1640 aa27.15■■□□□ 1.94
CDR2-206ENST00000567406 GRIN2AQ12879 1464 aa27.06■■□□□ 1.92
CDR2-206ENST00000567406 ADAMTS12P58397 1594 aa27.04■■□□□ 1.92
CDR2-206ENST00000567406 ERCC6L2Q5T890 1561 aa27■■□□□ 1.91
CDR2-206ENST00000567406 CEP170Q5SW79 1584 aa26.99■■□□□ 1.91
CDR2-206ENST00000567406 FHAD1B1AJZ9 1412 aa26.98■■□□□ 1.91
CDR2-206ENST00000567406 NUP160Q12769 1436 aa26.95■■□□□ 1.9
CDR2-206ENST00000567406 ERICH3Q5RHP9 1530 aa26.93■■□□□ 1.9
CDR2-206ENST00000567406 SHROOM2Q13796 1616 aa26.79■■□□□ 1.88
CDR2-206ENST00000567406 JPH4Q96JJ6 628 aa26.77■■□□□ 1.88
CDR2-206ENST00000567406 PRG4Q92954 1404 aaPredicted RBP26.75■■□□□ 1.87
CDR2-206ENST00000567406 IGF1RP08069 1367 aa26.71■■□□□ 1.87
CDR2-206ENST00000567406 KIF27Q86VH2 1401 aa26.65■■□□□ 1.86
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms