RNA–Protein interactions for RNA: ENST00000567400.1

GINS3-207, Transcript of GINS complex subunit 3, humanhuman

TSL 4

Gene GINS3, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GINS3-207ENST00000567400 NISCHQ9Y2I1 1504 aa18.79■□□□□ 0.6
GINS3-207ENST00000567400 CCDC180Q9P1Z9 1646 aa16.79■□□□□ 0.28
GINS3-207ENST00000567400 ABCC9O60706 1549 aa16.6■□□□□ 0.25
GINS3-207ENST00000567400 RB1CC1Q8TDY2 1594 aa15.87■□□□□ 0.13
GINS3-207ENST00000567400 NACADO15069 1562 aa15.81■□□□□ 0.12
GINS3-207ENST00000567400 MYO15BQ96JP2 1530 aa15.68■□□□□ 0.1
GINS3-207ENST00000567400 DCAF8L2P0C7V8 631 aa15.67■□□□□ 0.1
GINS3-207ENST00000567400 ZCCHC6Q5VYS8 1495 aaKnown RBP15.64■□□□□ 0.09
GINS3-207ENST00000567400 UNC13AQ9UPW8 1703 aa15.57■□□□□ 0.08
GINS3-207ENST00000567400 DCAF1Q9Y4B6 1507 aa15.54■□□□□ 0.08
GINS3-207ENST00000567400 PABPN1Q86U42 306 aaKnown RBP eCLIP15.47■□□□□ 0.07
GINS3-207ENST00000567400 BICRAQ9NZM4 1560 aa15.47■□□□□ 0.07
GINS3-207ENST00000567400 DNAJC5BQ9UF47 199 aa15.44■□□□□ 0.06
GINS3-207ENST00000567400 SCRIBQ14160 1630 aa15.32■□□□□ 0.04
GINS3-207ENST00000567400 SHROOM4Q9ULL8 1493 aa15.22■□□□□ 0.03
GINS3-207ENST00000567400 EIF4G1Q04637 1599 aaKnown RBP15.04■□□□□ -0
GINS3-207ENST00000567400 CC2D2AQ9P2K1 1620 aa15.03■□□□□ -0
GINS3-207ENST00000567400 CECR2Q9BXF3 1484 aa14.93□□□□□ -0.02
GINS3-207ENST00000567400 SMARCA4P51532 1647 aa14.64□□□□□ -0.07
GINS3-207ENST00000567400 NCAPD3P42695 1498 aa14.61□□□□□ -0.07
GINS3-207ENST00000567400 ATAD2BQ9ULI0 1458 aa14.59□□□□□ -0.07
GINS3-207ENST00000567400 BAZ1AQ9NRL2 1556 aaPredicted RBP14.56□□□□□ -0.08
GINS3-207ENST00000567400 SMARCA2P51531 1590 aa14.54□□□□□ -0.08
GINS3-207ENST00000567400 HMGXB3Q12766 1538 aa14.53□□□□□ -0.08
GINS3-207ENST00000567400 MROH2BQ7Z745 1585 aa14.51□□□□□ -0.09
GINS3-207ENST00000567400 PEG3Q9GZU2 1588 aa14.51□□□□□ -0.09
GINS3-207ENST00000567400 BAZ1BQ9UIG0 1483 aaKnown RBP14.44□□□□□ -0.1
GINS3-207ENST00000567400 NESP48681 1621 aa14.35□□□□□ -0.11
GINS3-207ENST00000567400 WIZO95785 1651 aa14.33□□□□□ -0.11
GINS3-207ENST00000567400 ERCC6Q03468 1493 aa14.28□□□□□ -0.12
GINS3-207ENST00000567400 RSF1Q96T23 1441 aaPredicted RBP14.25□□□□□ -0.13
GINS3-207ENST00000567400 LAMC3Q9Y6N6 1575 aa14.24□□□□□ -0.13
GINS3-207ENST00000567400 CUX2O14529 1486 aa14.23□□□□□ -0.13
GINS3-207ENST00000567400 THOC2Q8NI27 1593 aaKnown RBP14.17□□□□□ -0.14
GINS3-207ENST00000567400 KIF21AQ7Z4S6 1674 aa14.16□□□□□ -0.14
GINS3-207ENST00000567400 TOP2AP11388 1531 aaKnown RBP14.15□□□□□ -0.14
GINS3-207ENST00000567400 CADPSQ9ULU8 1353 aa14.15□□□□□ -0.14
GINS3-207ENST00000567400 PDS5BQ9NTI5 1447 aa14.11□□□□□ -0.15
GINS3-207ENST00000567400 CFTRP13569 1480 aa14.06□□□□□ -0.16
GINS3-207ENST00000567400 MRC2Q9UBG0 1479 aa14.01□□□□□ -0.17
GINS3-207ENST00000567400 WDR62O43379 1518 aa14□□□□□ -0.17
GINS3-207ENST00000567400 FANCD2Q9BXW9 1451 aa14□□□□□ -0.17
GINS3-207ENST00000567400 DNAJC5Q9H3Z4 198 aa13.99□□□□□ -0.17
GINS3-207ENST00000567400 CCDC88BA6NC98 1476 aa13.99□□□□□ -0.17
GINS3-207ENST00000567400 CEP164Q9UPV0 1460 aa13.99□□□□□ -0.17
GINS3-207ENST00000567400 PRDM2Q13029 1718 aa13.93□□□□□ -0.18
GINS3-207ENST00000567400 URB2Q14146 1524 aaKnown RBP13.9□□□□□ -0.18
GINS3-207ENST00000567400 TOPBP1Q92547 1522 aa13.77□□□□□ -0.21
GINS3-207ENST00000567400 DNMBPQ6XZF7 1577 aa13.73□□□□□ -0.21
GINS3-207ENST00000567400 ZNF608Q9ULD9 1512 aaPredicted RBP13.7□□□□□ -0.22
GINS3-207ENST00000567400 IFT140Q96RY7 1462 aa13.69□□□□□ -0.22
GINS3-207ENST00000567400 ABCC8Q09428 1581 aa13.69□□□□□ -0.22
GINS3-207ENST00000567400 SUPT5HO00267 1087 aaKnown RBP13.68□□□□□ -0.22
GINS3-207ENST00000567400 TARBP1Q13395 1621 aaKnown RBP13.66□□□□□ -0.22
GINS3-207ENST00000567400 POLA1P09884 1462 aaPredicted RBP13.65□□□□□ -0.22
GINS3-207ENST00000567400 EIF4G3O43432 1585 aaKnown RBP13.64□□□□□ -0.23
GINS3-207ENST00000567400 CUX1P39880 1505 aa13.62□□□□□ -0.23
GINS3-207ENST00000567400 RAD54L2Q9Y4B4 1467 aa13.59□□□□□ -0.23
GINS3-207ENST00000567400 AQRO60306 1485 aaKnown RBP eCLIP13.58□□□□□ -0.24
GINS3-207ENST00000567400 FGD5Q6ZNL6 1462 aa13.58□□□□□ -0.24
GINS3-207ENST00000567400 OSCARQ8IYS5 282 aa13.55□□□□□ -0.24
GINS3-207ENST00000567400 SOGA1O94964 1423 aa13.54□□□□□ -0.24
GINS3-207ENST00000567400 WDR97A6NE52 1622 aa13.52□□□□□ -0.25
GINS3-207ENST00000567400 TDRD9Q8NDG6 1382 aaKnown RBP13.51□□□□□ -0.25
GINS3-207ENST00000567400 CHD1O14646 1710 aa13.5□□□□□ -0.25
GINS3-207ENST00000567400 SNAPC4Q5SXM2 1469 aa13.45□□□□□ -0.26
GINS3-207ENST00000567400 SYNJ1O43426 1573 aa13.45□□□□□ -0.26
GINS3-207ENST00000567400 BIVM-ERCC5R4GMW8 1640 aa13.44□□□□□ -0.26
GINS3-207ENST00000567400 ABCA10Q8WWZ4 1543 aa13.44□□□□□ -0.26
GINS3-207ENST00000567400 RIMBP3CA6NJZ7 1639 aa13.43□□□□□ -0.26
GINS3-207ENST00000567400 RIMBP3BA6NNM3 1639 aa13.43□□□□□ -0.26
GINS3-207ENST00000567400 TOP2BQ02880 1626 aa13.43□□□□□ -0.26
GINS3-207ENST00000567400 ABCA5Q8WWZ7 1642 aa13.43□□□□□ -0.26
GINS3-207ENST00000567400 RIMBP3Q9UFD9 1639 aa13.43□□□□□ -0.26
GINS3-207ENST00000567400 GRIN2BQ13224 1484 aa13.42□□□□□ -0.26
GINS3-207ENST00000567400 WRNQ14191 1432 aaPredicted RBP eCLIP13.41□□□□□ -0.26
GINS3-207ENST00000567400 ARHGEF11O15085 1522 aa13.41□□□□□ -0.26
GINS3-207ENST00000567400 TRIM41Q8WV44 630 aa13.41□□□□□ -0.26
GINS3-207ENST00000567400 MAGI1Q96QZ7 1491 aaPredicted RBP13.41□□□□□ -0.26
GINS3-207ENST00000567400 PBRM1Q86U86 1689 aa13.4□□□□□ -0.26
GINS3-207ENST00000567400 GAPVD1Q14C86 1478 aa13.4□□□□□ -0.26
GINS3-207ENST00000567400 FBLN2P98095 1184 aa13.37□□□□□ -0.27
GINS3-207ENST00000567400 SYNJ2O15056 1496 aa13.36□□□□□ -0.27
GINS3-207ENST00000567400 CLASP1Q7Z460 1538 aa13.36□□□□□ -0.27
GINS3-207ENST00000567400 CHMP7Q8WUX9 453 aaPredicted RBP13.31□□□□□ -0.28
GINS3-207ENST00000567400 ARAP1Q96P48 1450 aa13.3□□□□□ -0.28
GINS3-207ENST00000567400 ADAMTS12P58397 1594 aa13.3□□□□□ -0.28
GINS3-207ENST00000567400 GRIN2AQ12879 1464 aa13.27□□□□□ -0.29
GINS3-207ENST00000567400 ERICH3Q5RHP9 1530 aa13.26□□□□□ -0.29
GINS3-207ENST00000567400 CEP170Q5SW79 1584 aa13.24□□□□□ -0.29
GINS3-207ENST00000567400 NUP160Q12769 1436 aa13.23□□□□□ -0.29
GINS3-207ENST00000567400 CYB5RLQ6IPT4 315 aa13.23□□□□□ -0.29
GINS3-207ENST00000567400 FHAD1B1AJZ9 1412 aa13.22□□□□□ -0.29
GINS3-207ENST00000567400 ERCC6L2Q5T890 1561 aa13.18□□□□□ -0.3
GINS3-207ENST00000567400 SHROOM2Q13796 1616 aa13.17□□□□□ -0.3
GINS3-207ENST00000567400 IGF1RP08069 1367 aa13.13□□□□□ -0.31
GINS3-207ENST00000567400 KIF27Q86VH2 1401 aa13.13□□□□□ -0.31
GINS3-207ENST00000567400 RUSC2Q8N2Y8 1516 aa13.12□□□□□ -0.31
GINS3-207ENST00000567400 CUL7Q14999 1698 aa13.1□□□□□ -0.31
GINS3-207ENST00000567400 PRG4Q92954 1404 aaPredicted RBP13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 75.4 ms