RNA–Protein interactions for RNA: ENST00000567393.5

NEIL1-213, Transcript of nei like DNA glycosylase 1, humanhuman

TSL 5

Gene NEIL1, Length 1,221 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEIL1-213ENST00000567393 NISCHQ9Y2I1 1504 aa32.29■■■□□ 2.76
NEIL1-213ENST00000567393 CCDC180Q9P1Z9 1646 aa28.69■■■□□ 2.18
NEIL1-213ENST00000567393 ABCC9O60706 1549 aa28.06■■■□□ 2.08
NEIL1-213ENST00000567393 RB1CC1Q8TDY2 1594 aa27.02■■□□□ 1.92
NEIL1-213ENST00000567393 NACADO15069 1562 aa27■■□□□ 1.91
NEIL1-213ENST00000567393 DCAF8L2P0C7V8 631 aa26.94■■□□□ 1.9
NEIL1-213ENST00000567393 ZCCHC6Q5VYS8 1495 aaKnown RBP26.91■■□□□ 1.9
NEIL1-213ENST00000567393 MYO15BQ96JP2 1530 aa26.88■■□□□ 1.89
NEIL1-213ENST00000567393 DCAF1Q9Y4B6 1507 aa26.75■■□□□ 1.87
NEIL1-213ENST00000567393 UNC13AQ9UPW8 1703 aa26.25■■□□□ 1.79
NEIL1-213ENST00000567393 PABPN1Q86U42 306 aaKnown RBP eCLIP26.2■■□□□ 1.78
NEIL1-213ENST00000567393 SCRIBQ14160 1630 aa26.15■■□□□ 1.78
NEIL1-213ENST00000567393 BICRAQ9NZM4 1560 aa26.15■■□□□ 1.78
NEIL1-213ENST00000567393 SHROOM4Q9ULL8 1493 aa26■■□□□ 1.75
NEIL1-213ENST00000567393 DNAJC5BQ9UF47 199 aa25.7■■□□□ 1.7
NEIL1-213ENST00000567393 EIF4G1Q04637 1599 aaKnown RBP25.49■■□□□ 1.67
NEIL1-213ENST00000567393 CC2D2AQ9P2K1 1620 aa25.36■■□□□ 1.65
NEIL1-213ENST00000567393 CECR2Q9BXF3 1484 aa25.23■■□□□ 1.63
NEIL1-213ENST00000567393 BAZ1AQ9NRL2 1556 aaPredicted RBP25.04■■□□□ 1.6
NEIL1-213ENST00000567393 SMARCA4P51532 1647 aa25.03■■□□□ 1.6
NEIL1-213ENST00000567393 NCAPD3P42695 1498 aa24.92■■□□□ 1.58
NEIL1-213ENST00000567393 ATAD2BQ9ULI0 1458 aa24.92■■□□□ 1.58
NEIL1-213ENST00000567393 SMARCA2P51531 1590 aa24.91■■□□□ 1.58
NEIL1-213ENST00000567393 MROH2BQ7Z745 1585 aa24.86■■□□□ 1.57
NEIL1-213ENST00000567393 PEG3Q9GZU2 1588 aa24.81■■□□□ 1.56
NEIL1-213ENST00000567393 HMGXB3Q12766 1538 aa24.8■■□□□ 1.56
NEIL1-213ENST00000567393 BAZ1BQ9UIG0 1483 aaKnown RBP24.72■■□□□ 1.55
NEIL1-213ENST00000567393 RSF1Q96T23 1441 aaPredicted RBP24.61■■□□□ 1.53
NEIL1-213ENST00000567393 WIZO95785 1651 aa24.54■■□□□ 1.52
NEIL1-213ENST00000567393 TOP2AP11388 1531 aaKnown RBP24.36■■□□□ 1.49
NEIL1-213ENST00000567393 NESP48681 1621 aa24.25■■□□□ 1.47
NEIL1-213ENST00000567393 LAMC3Q9Y6N6 1575 aa24.25■■□□□ 1.47
NEIL1-213ENST00000567393 ERCC6Q03468 1493 aa24.21■■□□□ 1.47
NEIL1-213ENST00000567393 CADPSQ9ULU8 1353 aa24.19■■□□□ 1.46
NEIL1-213ENST00000567393 PDS5BQ9NTI5 1447 aa24.11■■□□□ 1.45
NEIL1-213ENST00000567393 CCDC88BA6NC98 1476 aa24.06■■□□□ 1.44
NEIL1-213ENST00000567393 CFTRP13569 1480 aa24.05■■□□□ 1.44
NEIL1-213ENST00000567393 CUX2O14529 1486 aa23.97■■□□□ 1.43
NEIL1-213ENST00000567393 SUPT5HO00267 1087 aaKnown RBP23.95■■□□□ 1.42
NEIL1-213ENST00000567393 KIF21AQ7Z4S6 1674 aa23.92■■□□□ 1.42
NEIL1-213ENST00000567393 FANCD2Q9BXW9 1451 aa23.91■■□□□ 1.42
NEIL1-213ENST00000567393 THOC2Q8NI27 1593 aaKnown RBP23.91■■□□□ 1.42
NEIL1-213ENST00000567393 CEP164Q9UPV0 1460 aa23.89■■□□□ 1.42
NEIL1-213ENST00000567393 MRC2Q9UBG0 1479 aa23.85■■□□□ 1.41
NEIL1-213ENST00000567393 WDR62O43379 1518 aa23.76■■□□□ 1.39
NEIL1-213ENST00000567393 PRDM2Q13029 1718 aa23.76■■□□□ 1.39
NEIL1-213ENST00000567393 URB2Q14146 1524 aaKnown RBP23.64■■□□□ 1.38
NEIL1-213ENST00000567393 ABCC8Q09428 1581 aa23.56■■□□□ 1.36
NEIL1-213ENST00000567393 TOPBP1Q92547 1522 aa23.52■■□□□ 1.36
NEIL1-213ENST00000567393 DNMBPQ6XZF7 1577 aa23.49■■□□□ 1.35
NEIL1-213ENST00000567393 IFT140Q96RY7 1462 aa23.39■■□□□ 1.34
NEIL1-213ENST00000567393 CUX1P39880 1505 aa23.33■■□□□ 1.32
NEIL1-213ENST00000567393 POLA1P09884 1462 aaPredicted RBP23.32■■□□□ 1.32
NEIL1-213ENST00000567393 FGD5Q6ZNL6 1462 aa23.26■■□□□ 1.31
NEIL1-213ENST00000567393 ZNF608Q9ULD9 1512 aaPredicted RBP23.23■■□□□ 1.31
NEIL1-213ENST00000567393 SOGA1O94964 1423 aa23.23■■□□□ 1.31
NEIL1-213ENST00000567393 TARBP1Q13395 1621 aaKnown RBP23.22■■□□□ 1.31
NEIL1-213ENST00000567393 WRNQ14191 1432 aaPredicted RBP eCLIP23.22■■□□□ 1.31
NEIL1-213ENST00000567393 RAD54L2Q9Y4B4 1467 aa23.19■■□□□ 1.3
NEIL1-213ENST00000567393 DNAJC5Q9H3Z4 198 aa23.19■■□□□ 1.3
NEIL1-213ENST00000567393 EIF4G3O43432 1585 aaKnown RBP23.15■■□□□ 1.3
NEIL1-213ENST00000567393 TOP2BQ02880 1626 aa23.13■■□□□ 1.29
NEIL1-213ENST00000567393 AQRO60306 1485 aaKnown RBP eCLIP23.11■■□□□ 1.29
NEIL1-213ENST00000567393 WDR97A6NE52 1622 aa23.11■■□□□ 1.29
NEIL1-213ENST00000567393 BIVM-ERCC5R4GMW8 1640 aa23.11■■□□□ 1.29
NEIL1-213ENST00000567393 SYNJ1O43426 1573 aa23.1■■□□□ 1.29
NEIL1-213ENST00000567393 TDRD9Q8NDG6 1382 aaKnown RBP23.08■■□□□ 1.29
NEIL1-213ENST00000567393 ABCA10Q8WWZ4 1543 aa23.06■■□□□ 1.28
NEIL1-213ENST00000567393 GRIN2BQ13224 1484 aa22.98■■□□□ 1.27
NEIL1-213ENST00000567393 OSCARQ8IYS5 282 aa22.96■■□□□ 1.27
NEIL1-213ENST00000567393 GAPVD1Q14C86 1478 aa22.96■■□□□ 1.27
NEIL1-213ENST00000567393 ABCA5Q8WWZ7 1642 aa22.93■■□□□ 1.26
NEIL1-213ENST00000567393 SNAPC4Q5SXM2 1469 aa22.92■■□□□ 1.26
NEIL1-213ENST00000567393 MAGI1Q96QZ7 1491 aaPredicted RBP22.92■■□□□ 1.26
NEIL1-213ENST00000567393 FBLN2P98095 1184 aa22.84■■□□□ 1.25
NEIL1-213ENST00000567393 PBRM1Q86U86 1689 aa22.84■■□□□ 1.25
NEIL1-213ENST00000567393 SYNJ2O15056 1496 aa22.82■■□□□ 1.24
NEIL1-213ENST00000567393 CHMP7Q8WUX9 453 aaPredicted RBP22.8■■□□□ 1.24
NEIL1-213ENST00000567393 CHD1O14646 1710 aa22.79■■□□□ 1.24
NEIL1-213ENST00000567393 ERICH3Q5RHP9 1530 aa22.78■■□□□ 1.24
NEIL1-213ENST00000567393 KIF27Q86VH2 1401 aa22.74■■□□□ 1.23
NEIL1-213ENST00000567393 ADAMTS12P58397 1594 aa22.72■■□□□ 1.23
NEIL1-213ENST00000567393 FHAD1B1AJZ9 1412 aa22.72■■□□□ 1.23
NEIL1-213ENST00000567393 GRIN2AQ12879 1464 aa22.67■■□□□ 1.22
NEIL1-213ENST00000567393 TRIM41Q8WV44 630 aa22.66■■□□□ 1.22
NEIL1-213ENST00000567393 CLASP1Q7Z460 1538 aa22.62■■□□□ 1.21
NEIL1-213ENST00000567393 IGF1RP08069 1367 aa22.62■■□□□ 1.21
NEIL1-213ENST00000567393 ARHGEF11O15085 1522 aa22.58■■□□□ 1.21
NEIL1-213ENST00000567393 NUP160Q12769 1436 aa22.57■■□□□ 1.2
NEIL1-213ENST00000567393 CUL7Q14999 1698 aa22.55■■□□□ 1.2
NEIL1-213ENST00000567393 RIMBP3CA6NJZ7 1639 aa22.53■■□□□ 1.2
NEIL1-213ENST00000567393 RIMBP3BA6NNM3 1639 aa22.53■■□□□ 1.2
NEIL1-213ENST00000567393 RIMBP3Q9UFD9 1639 aa22.53■■□□□ 1.2
NEIL1-213ENST00000567393 CEP170Q5SW79 1584 aa22.51■■□□□ 1.19
NEIL1-213ENST00000567393 CARMIL1Q5VZK9 1371 aa22.5■■□□□ 1.19
NEIL1-213ENST00000567393 RUSC2Q8N2Y8 1516 aa22.46■■□□□ 1.19
NEIL1-213ENST00000567393 ARAP1Q96P48 1450 aa22.39■■□□□ 1.17
NEIL1-213ENST00000567393 RAPGEF2Q9Y4G8 1499 aa22.37■■□□□ 1.17
NEIL1-213ENST00000567393 KIAA0586Q9BVV6 1533 aa22.36■■□□□ 1.17
NEIL1-213ENST00000567393 SHROOM2Q13796 1616 aa22.36■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms