RNA–Protein interactions for RNA: ENST00000567250.5

SF3B3-208, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 3

Gene SF3B3, Length 1,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-208ENST00000567250 NISCHQ9Y2I1 1504 aa29.24■■■□□ 2.27
SF3B3-208ENST00000567250 CCDC180Q9P1Z9 1646 aa26.07■■□□□ 1.76
SF3B3-208ENST00000567250 ABCC9O60706 1549 aa25.1■■□□□ 1.61
SF3B3-208ENST00000567250 ZCCHC6Q5VYS8 1495 aaKnown RBP24.44■■□□□ 1.5
SF3B3-208ENST00000567250 NACADO15069 1562 aa24.37■■□□□ 1.49
SF3B3-208ENST00000567250 RB1CC1Q8TDY2 1594 aa24.37■■□□□ 1.49
SF3B3-208ENST00000567250 MYO15BQ96JP2 1530 aa24.3■■□□□ 1.48
SF3B3-208ENST00000567250 DCAF1Q9Y4B6 1507 aa24.27■■□□□ 1.48
SF3B3-208ENST00000567250 DCAF8L2P0C7V8 631 aa24.19■■□□□ 1.46
SF3B3-208ENST00000567250 AEBP2Q6ZN18 517 aaPredicted RBP23.92■■□□□ 1.42
SF3B3-208ENST00000567250 UNC13AQ9UPW8 1703 aa23.84■■□□□ 1.41
SF3B3-208ENST00000567250 SCRIBQ14160 1630 aa23.7■■□□□ 1.38
SF3B3-208ENST00000567250 CHIC1Q5VXU3 224 aa23.59■■□□□ 1.37
SF3B3-208ENST00000567250 BICRAQ9NZM4 1560 aa23.53■■□□□ 1.36
SF3B3-208ENST00000567250 SHROOM4Q9ULL8 1493 aa23.45■■□□□ 1.34
SF3B3-208ENST00000567250 PABPN1Q86U42 306 aaKnown RBP eCLIP23.38■■□□□ 1.33
SF3B3-208ENST00000567250 EIF4G1Q04637 1599 aaKnown RBP22.94■■□□□ 1.26
SF3B3-208ENST00000567250 CC2D2AQ9P2K1 1620 aa22.79■■□□□ 1.24
SF3B3-208ENST00000567250 BAZ1AQ9NRL2 1556 aaPredicted RBP22.72■■□□□ 1.23
SF3B3-208ENST00000567250 SMARCA4P51532 1647 aa22.71■■□□□ 1.23
SF3B3-208ENST00000567250 CECR2Q9BXF3 1484 aa22.67■■□□□ 1.22
SF3B3-208ENST00000567250 DNAJC5BQ9UF47 199 aa22.66■■□□□ 1.22
SF3B3-208ENST00000567250 SMARCA2P51531 1590 aa22.53■■□□□ 1.2
SF3B3-208ENST00000567250 MROH2BQ7Z745 1585 aa22.5■■□□□ 1.19
SF3B3-208ENST00000567250 PEG3Q9GZU2 1588 aa22.49■■□□□ 1.19
SF3B3-208ENST00000567250 ATAD2BQ9ULI0 1458 aa22.44■■□□□ 1.18
SF3B3-208ENST00000567250 HMGXB3Q12766 1538 aa22.41■■□□□ 1.18
SF3B3-208ENST00000567250 NCAPD3P42695 1498 aa22.4■■□□□ 1.18
SF3B3-208ENST00000567250 BAZ1BQ9UIG0 1483 aaKnown RBP22.33■■□□□ 1.16
SF3B3-208ENST00000567250 WIZO95785 1651 aa22.32■■□□□ 1.16
SF3B3-208ENST00000567250 RSF1Q96T23 1441 aaPredicted RBP22.29■■□□□ 1.16
SF3B3-208ENST00000567250 TOP2AP11388 1531 aaKnown RBP22.14■■□□□ 1.13
SF3B3-208ENST00000567250 LAMC3Q9Y6N6 1575 aa21.89■■□□□ 1.09
SF3B3-208ENST00000567250 SUPT5HO00267 1087 aaKnown RBP21.81■■□□□ 1.08
SF3B3-208ENST00000567250 CCDC88BA6NC98 1476 aa21.77■■□□□ 1.08
SF3B3-208ENST00000567250 NESP48681 1621 aa21.76■■□□□ 1.07
SF3B3-208ENST00000567250 PRDM2Q13029 1718 aa21.75■■□□□ 1.07
SF3B3-208ENST00000567250 CADPSQ9ULU8 1353 aa21.74■■□□□ 1.07
SF3B3-208ENST00000567250 CFTRP13569 1480 aa21.69■■□□□ 1.06
SF3B3-208ENST00000567250 ERCC6Q03468 1493 aa21.69■■□□□ 1.06
SF3B3-208ENST00000567250 PDS5BQ9NTI5 1447 aa21.66■■□□□ 1.06
SF3B3-208ENST00000567250 KIF21AQ7Z4S6 1674 aa21.66■■□□□ 1.06
SF3B3-208ENST00000567250 FANCD2Q9BXW9 1451 aa21.53■■□□□ 1.04
SF3B3-208ENST00000567250 CEP164Q9UPV0 1460 aa21.53■■□□□ 1.04
SF3B3-208ENST00000567250 THOC2Q8NI27 1593 aaKnown RBP21.52■■□□□ 1.04
SF3B3-208ENST00000567250 MRC2Q9UBG0 1479 aa21.44■■□□□ 1.02
SF3B3-208ENST00000567250 CUX2O14529 1486 aa21.41■■□□□ 1.02
SF3B3-208ENST00000567250 WDR62O43379 1518 aa21.39■■□□□ 1.02
SF3B3-208ENST00000567250 URB2Q14146 1524 aaKnown RBP21.29■■□□□ 1
SF3B3-208ENST00000567250 ABCC8Q09428 1581 aa21.28■■□□□ 1
SF3B3-208ENST00000567250 DNMBPQ6XZF7 1577 aa21.27■■□□□ 1
SF3B3-208ENST00000567250 TOPBP1Q92547 1522 aa21.22■□□□□ 0.99
SF3B3-208ENST00000567250 CUX1P39880 1505 aa21.12■□□□□ 0.97
SF3B3-208ENST00000567250 BIVM-ERCC5R4GMW8 1640 aa21.1■□□□□ 0.97
SF3B3-208ENST00000567250 WRNQ14191 1432 aaPredicted RBP eCLIP21.07■□□□□ 0.96
SF3B3-208ENST00000567250 TOP2BQ02880 1626 aa21.07■□□□□ 0.96
SF3B3-208ENST00000567250 IFT140Q96RY7 1462 aa21.06■□□□□ 0.96
SF3B3-208ENST00000567250 POLA1P09884 1462 aaPredicted RBP21.05■□□□□ 0.96
SF3B3-208ENST00000567250 SYNJ1O43426 1573 aa21.03■□□□□ 0.96
SF3B3-208ENST00000567250 FGD5Q6ZNL6 1462 aa21.03■□□□□ 0.96
SF3B3-208ENST00000567250 TARBP1Q13395 1621 aaKnown RBP21■□□□□ 0.95
SF3B3-208ENST00000567250 WDR97A6NE52 1622 aa20.96■□□□□ 0.95
SF3B3-208ENST00000567250 EIF4G3O43432 1585 aaKnown RBP20.93■□□□□ 0.94
SF3B3-208ENST00000567250 SOGA1O94964 1423 aa20.92■□□□□ 0.94
SF3B3-208ENST00000567250 RAD54L2Q9Y4B4 1467 aa20.89■□□□□ 0.94
SF3B3-208ENST00000567250 ZNF608Q9ULD9 1512 aaPredicted RBP20.86■□□□□ 0.93
SF3B3-208ENST00000567250 ABCA10Q8WWZ4 1543 aa20.85■□□□□ 0.93
SF3B3-208ENST00000567250 ABCA5Q8WWZ7 1642 aa20.81■□□□□ 0.92
SF3B3-208ENST00000567250 PBRM1Q86U86 1689 aa20.8■□□□□ 0.92
SF3B3-208ENST00000567250 AQRO60306 1485 aaKnown RBP eCLIP20.75■□□□□ 0.912e-11■■■■■ 32.6
SF3B3-208ENST00000567250 PHF23Q9BUL5 403 aaPredicted RBP20.74■□□□□ 0.91
SF3B3-208ENST00000567250 TDRD9Q8NDG6 1382 aaKnown RBP20.73■□□□□ 0.91
SF3B3-208ENST00000567250 GAPVD1Q14C86 1478 aa20.73■□□□□ 0.91
SF3B3-208ENST00000567250 GRIN2BQ13224 1484 aa20.71■□□□□ 0.91
SF3B3-208ENST00000567250 MAGI1Q96QZ7 1491 aaPredicted RBP20.68■□□□□ 0.9
SF3B3-208ENST00000567250 ERICH3Q5RHP9 1530 aa20.65■□□□□ 0.9
SF3B3-208ENST00000567250 SNAPC4Q5SXM2 1469 aa20.65■□□□□ 0.9
SF3B3-208ENST00000567250 TRIM41Q8WV44 630 aa20.64■□□□□ 0.89
SF3B3-208ENST00000567250 CHD1O14646 1710 aa20.64■□□□□ 0.89
SF3B3-208ENST00000567250 KIF27Q86VH2 1401 aa20.63■□□□□ 0.89
SF3B3-208ENST00000567250 ADAMTS12P58397 1594 aa20.59■□□□□ 0.89
SF3B3-208ENST00000567250 CUL7Q14999 1698 aa20.58■□□□□ 0.88
SF3B3-208ENST00000567250 SYNJ2O15056 1496 aa20.56■□□□□ 0.88
SF3B3-208ENST00000567250 FHAD1B1AJZ9 1412 aa20.5■□□□□ 0.87
SF3B3-208ENST00000567250 GRIN2AQ12879 1464 aa20.45■□□□□ 0.86
SF3B3-208ENST00000567250 FBLN2P98095 1184 aa20.45■□□□□ 0.86
SF3B3-208ENST00000567250 CHMP7Q8WUX9 453 aaPredicted RBP20.45■□□□□ 0.86
SF3B3-208ENST00000567250 OSCARQ8IYS5 282 aa20.43■□□□□ 0.86
SF3B3-208ENST00000567250 EEA1Q15075 1411 aa20.42■□□□□ 0.86
SF3B3-208ENST00000567250 IGF1RP08069 1367 aa20.4■□□□□ 0.86
SF3B3-208ENST00000567250 RUSC2Q8N2Y8 1516 aa20.39■□□□□ 0.85
SF3B3-208ENST00000567250 CLASP1Q7Z460 1538 aa20.36■□□□□ 0.85
SF3B3-208ENST00000567250 CEP170Q5SW79 1584 aa20.34■□□□□ 0.85
SF3B3-208ENST00000567250 CARMIL1Q5VZK9 1371 aa20.34■□□□□ 0.85
SF3B3-208ENST00000567250 DNAJC5Q9H3Z4 198 aa20.33■□□□□ 0.85
SF3B3-208ENST00000567250 SENP3Q9H4L4 574 aaPredicted RBP20.33■□□□□ 0.85
SF3B3-208ENST00000567250 NUP160Q12769 1436 aa20.33■□□□□ 0.84
SF3B3-208ENST00000567250 RAPGEF2Q9Y4G8 1499 aa20.3■□□□□ 0.84
SF3B3-208ENST00000567250 PRXQ9BXM0 1461 aa20.25■□□□□ 0.83
SF3B3-208ENST00000567250 CTTNBP2Q8WZ74 1663 aa20.25■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 60.8 ms