RNA–Protein interactions for RNA: ENST00000567223.6

SMPD3-209, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 2

Gene SMPD3, Length 530 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-209ENST00000567223 NISCHQ9Y2I1 1504 aa46.36■■■■■ 5.01
SMPD3-209ENST00000567223 CCDC180Q9P1Z9 1646 aa41.51■■■■■ 4.24
SMPD3-209ENST00000567223 ABCC9O60706 1549 aa40.86■■■■■ 4.13
SMPD3-209ENST00000567223 RB1CC1Q8TDY2 1594 aa39.25■■■■□ 3.87
SMPD3-209ENST00000567223 NACADO15069 1562 aa39.13■■■■□ 3.85
SMPD3-209ENST00000567223 MYO15BQ96JP2 1530 aa38.88■■■■□ 3.81
SMPD3-209ENST00000567223 DCAF8L2P0C7V8 631 aa38.61■■■■□ 3.77
SMPD3-209ENST00000567223 ZCCHC6Q5VYS8 1495 aaKnown RBP38.54■■■■□ 3.76
SMPD3-209ENST00000567223 DCAF1Q9Y4B6 1507 aa38.48■■■■□ 3.75
SMPD3-209ENST00000567223 UNC13AQ9UPW8 1703 aa38.29■■■■□ 3.72
SMPD3-209ENST00000567223 BICRAQ9NZM4 1560 aa38.06■■■■□ 3.68
SMPD3-209ENST00000567223 PABPN1Q86U42 306 aaKnown RBP eCLIP38.02■■■■□ 3.68
SMPD3-209ENST00000567223 DNAJC5BQ9UF47 199 aa37.94■■■■□ 3.66
SMPD3-209ENST00000567223 SHROOM4Q9ULL8 1493 aa37.82■■■■□ 3.64
SMPD3-209ENST00000567223 SCRIBQ14160 1630 aa37.63■■■■□ 3.61
SMPD3-209ENST00000567223 EIF4G1Q04637 1599 aaKnown RBP37.09■■■■□ 3.53
SMPD3-209ENST00000567223 CC2D2AQ9P2K1 1620 aa37.03■■■■□ 3.52
SMPD3-209ENST00000567223 CECR2Q9BXF3 1484 aa36.84■■■■□ 3.49
SMPD3-209ENST00000567223 NCAPD3P42695 1498 aa36.11■■■■□ 3.37
SMPD3-209ENST00000567223 SMARCA4P51532 1647 aa36.06■■■■□ 3.36
SMPD3-209ENST00000567223 ATAD2BQ9ULI0 1458 aa35.99■■■■□ 3.35
SMPD3-209ENST00000567223 BAZ1AQ9NRL2 1556 aaPredicted RBP35.99■■■■□ 3.35
SMPD3-209ENST00000567223 SMARCA2P51531 1590 aa35.97■■■■□ 3.35
SMPD3-209ENST00000567223 HMGXB3Q12766 1538 aa35.91■■■■□ 3.34
SMPD3-209ENST00000567223 PEG3Q9GZU2 1588 aa35.85■■■■□ 3.33
SMPD3-209ENST00000567223 MROH2BQ7Z745 1585 aa35.65■■■■□ 3.3
SMPD3-209ENST00000567223 BAZ1BQ9UIG0 1483 aaKnown RBP35.64■■■■□ 3.3
SMPD3-209ENST00000567223 ERCC6Q03468 1493 aa35.28■■■■□ 3.24
SMPD3-209ENST00000567223 CUX2O14529 1486 aa35.24■■■■□ 3.23
SMPD3-209ENST00000567223 LAMC3Q9Y6N6 1575 aa35.23■■■■□ 3.23
SMPD3-209ENST00000567223 NESP48681 1621 aa35.22■■■■□ 3.23
SMPD3-209ENST00000567223 WIZO95785 1651 aa35.21■■■■□ 3.23
SMPD3-209ENST00000567223 RSF1Q96T23 1441 aaPredicted RBP35.09■■■■□ 3.21
SMPD3-209ENST00000567223 CADPSQ9ULU8 1353 aa34.98■■■■□ 3.19
SMPD3-209ENST00000567223 PDS5BQ9NTI5 1447 aa34.97■■■■□ 3.19
SMPD3-209ENST00000567223 THOC2Q8NI27 1593 aaKnown RBP34.92■■■■□ 3.18
SMPD3-209ENST00000567223 TOP2AP11388 1531 aaKnown RBP34.91■■■■□ 3.18
SMPD3-209ENST00000567223 KIF21AQ7Z4S6 1674 aa34.82■■■■□ 3.17
SMPD3-209ENST00000567223 CFTRP13569 1480 aa34.71■■■■□ 3.15
SMPD3-209ENST00000567223 DNAJC5Q9H3Z4 198 aa34.65■■■■□ 3.14
SMPD3-209ENST00000567223 MRC2Q9UBG0 1479 aa34.62■■■■□ 3.13
SMPD3-209ENST00000567223 WDR62O43379 1518 aa34.57■■■■□ 3.12
SMPD3-209ENST00000567223 CEP164Q9UPV0 1460 aa34.56■■■■□ 3.12
SMPD3-209ENST00000567223 FANCD2Q9BXW9 1451 aa34.53■■■■□ 3.12
SMPD3-209ENST00000567223 CCDC88BA6NC98 1476 aa34.44■■■■□ 3.1
SMPD3-209ENST00000567223 PRDM2Q13029 1718 aa34.38■■■■□ 3.09
SMPD3-209ENST00000567223 URB2Q14146 1524 aaKnown RBP34.22■■■■□ 3.07
SMPD3-209ENST00000567223 ABCC8Q09428 1581 aa34.01■■■■□ 3.03
SMPD3-209ENST00000567223 TOPBP1Q92547 1522 aa33.94■■■■□ 3.02
SMPD3-209ENST00000567223 DNMBPQ6XZF7 1577 aa33.89■■■■□ 3.02
SMPD3-209ENST00000567223 IFT140Q96RY7 1462 aa33.88■■■■□ 3.01
SMPD3-209ENST00000567223 ZNF608Q9ULD9 1512 aaPredicted RBP33.69■■■□□ 2.98
SMPD3-209ENST00000567223 TARBP1Q13395 1621 aaKnown RBP33.64■■■□□ 2.98
SMPD3-209ENST00000567223 POLA1P09884 1462 aaPredicted RBP33.63■■■□□ 2.97
SMPD3-209ENST00000567223 SUPT5HO00267 1087 aaKnown RBP33.59■■■□□ 2.97
SMPD3-209ENST00000567223 EIF4G3O43432 1585 aaKnown RBP33.59■■■□□ 2.97
SMPD3-209ENST00000567223 OSCARQ8IYS5 282 aa33.58■■■□□ 2.97
SMPD3-209ENST00000567223 CUX1P39880 1505 aa33.48■■■□□ 2.95
SMPD3-209ENST00000567223 WDR97A6NE52 1622 aa33.48■■■□□ 2.95
SMPD3-209ENST00000567223 FGD5Q6ZNL6 1462 aa33.44■■■□□ 2.94
SMPD3-209ENST00000567223 SOGA1O94964 1423 aa33.44■■■□□ 2.94
SMPD3-209ENST00000567223 AQRO60306 1485 aaKnown RBP eCLIP33.42■■■□□ 2.94
SMPD3-209ENST00000567223 RAD54L2Q9Y4B4 1467 aa33.39■■■□□ 2.94
SMPD3-209ENST00000567223 TDRD9Q8NDG6 1382 aaKnown RBP33.25■■■□□ 2.91
SMPD3-209ENST00000567223 CHD1O14646 1710 aa33.2■■■□□ 2.91
SMPD3-209ENST00000567223 ABCA10Q8WWZ4 1543 aa33.18■■■□□ 2.9
SMPD3-209ENST00000567223 MAGI1Q96QZ7 1491 aaPredicted RBP33.17■■■□□ 2.9
SMPD3-209ENST00000567223 GRIN2BQ13224 1484 aa33.16■■■□□ 2.9
SMPD3-209ENST00000567223 BIVM-ERCC5R4GMW8 1640 aa33.13■■■□□ 2.89
SMPD3-209ENST00000567223 TOP2BQ02880 1626 aa33.13■■■□□ 2.89
SMPD3-209ENST00000567223 SNAPC4Q5SXM2 1469 aa33.12■■■□□ 2.89
SMPD3-209ENST00000567223 RIMBP3CA6NJZ7 1639 aa33.1■■■□□ 2.89
SMPD3-209ENST00000567223 RIMBP3BA6NNM3 1639 aa33.1■■■□□ 2.89
SMPD3-209ENST00000567223 RIMBP3Q9UFD9 1639 aa33.1■■■□□ 2.89
SMPD3-209ENST00000567223 WRNQ14191 1432 aaPredicted RBP eCLIP33.09■■■□□ 2.89
SMPD3-209ENST00000567223 ABCA5Q8WWZ7 1642 aa33.08■■■□□ 2.89
SMPD3-209ENST00000567223 TRIM41Q8WV44 630 aa33.07■■■□□ 2.88
SMPD3-209ENST00000567223 ARHGEF11O15085 1522 aa33.07■■■□□ 2.88
SMPD3-209ENST00000567223 GAPVD1Q14C86 1478 aa33.06■■■□□ 2.88
SMPD3-209ENST00000567223 PBRM1Q86U86 1689 aa33.02■■■□□ 2.88
SMPD3-209ENST00000567223 SYNJ2O15056 1496 aa33.02■■■□□ 2.88
SMPD3-209ENST00000567223 SYNJ1O43426 1573 aa33.01■■■□□ 2.88
SMPD3-209ENST00000567223 FBLN2P98095 1184 aa32.99■■■□□ 2.87
SMPD3-209ENST00000567223 CLASP1Q7Z460 1538 aa32.94■■■□□ 2.86
SMPD3-209ENST00000567223 CHMP7Q8WUX9 453 aaPredicted RBP32.92■■■□□ 2.86
SMPD3-209ENST00000567223 ERICH3Q5RHP9 1530 aa32.78■■■□□ 2.84
SMPD3-209ENST00000567223 ADAMTS12P58397 1594 aa32.77■■■□□ 2.84
SMPD3-209ENST00000567223 ARAP1Q96P48 1450 aa32.76■■■□□ 2.84
SMPD3-209ENST00000567223 GRIN2AQ12879 1464 aa32.73■■■□□ 2.83
SMPD3-209ENST00000567223 FHAD1B1AJZ9 1412 aa32.7■■■□□ 2.83
SMPD3-209ENST00000567223 CYB5RLQ6IPT4 315 aa32.66■■■□□ 2.82
SMPD3-209ENST00000567223 NUP160Q12769 1436 aa32.65■■■□□ 2.82
SMPD3-209ENST00000567223 CEP170Q5SW79 1584 aa32.56■■■□□ 2.8
SMPD3-209ENST00000567223 SHROOM2Q13796 1616 aa32.48■■■□□ 2.79
SMPD3-209ENST00000567223 KIF27Q86VH2 1401 aa32.45■■■□□ 2.79
SMPD3-209ENST00000567223 CUL7Q14999 1698 aa32.37■■■□□ 2.77
SMPD3-209ENST00000567223 IGF1RP08069 1367 aa32.37■■■□□ 2.77
SMPD3-209ENST00000567223 ERCC6L2Q5T890 1561 aa32.32■■■□□ 2.77
SMPD3-209ENST00000567223 RUSC2Q8N2Y8 1516 aa32.31■■■□□ 2.76
SMPD3-209ENST00000567223 JPH4Q96JJ6 628 aa32.2■■■□□ 2.75
Retrieved 100 of 20,778 RNA–protein pairs in 58.1 ms