RNA–Protein interactions for RNA: ENST00000567205.1

FANCA-222, Transcript of FA complementation group A, human

TSL 1 (best)

Gene FANCA, Length 413 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
FANCA-222	ENST00000567205	NISCH	Q9Y2I1	1504 aa		39.69	■■■■□ 3.94
FANCA-222	ENST00000567205	CCDC180	Q9P1Z9	1646 aa		35.51	■■■■□ 3.28
FANCA-222	ENST00000567205	ABCC9	O60706	1549 aa		35.15	■■■■□ 3.22
FANCA-222	ENST00000567205	RB1CC1	Q8TDY2	1594 aa		33.6	■■■□□ 2.97
FANCA-222	ENST00000567205	NACAD	O15069	1562 aa		33.41	■■■□□ 2.94
FANCA-222	ENST00000567205	MYO15B	Q96JP2	1530 aa		33.11	■■■□□ 2.89
FANCA-222	ENST00000567205	ZCCHC6	Q5VYS8	1495 aa	Known RBP	33.1	■■■□□ 2.89
FANCA-222	ENST00000567205	DCAF8L2	P0C7V8	631 aa		33.08	■■■□□ 2.89
FANCA-222	ENST00000567205	DCAF1	Q9Y4B6	1507 aa		32.95	■■■□□ 2.87
FANCA-222	ENST00000567205	DNAJC5B	Q9UF47	199 aa		32.86	■■■□□ 2.85
FANCA-222	ENST00000567205	UNC13A	Q9UPW8	1703 aa		32.81	■■■□□ 2.84
FANCA-222	ENST00000567205	PABPN1	Q86U42	306 aa	Known RBP eCLIP	32.7	■■■□□ 2.83	3e-11	■■□□□ 12.8
FANCA-222	ENST00000567205	BICRA	Q9NZM4	1560 aa		32.58	■■■□□ 2.81
FANCA-222	ENST00000567205	SHROOM4	Q9ULL8	1493 aa		32.27	■■■□□ 2.76
FANCA-222	ENST00000567205	SCRIB	Q14160	1630 aa		32.2	■■■□□ 2.75
FANCA-222	ENST00000567205	CC2D2A	Q9P2K1	1620 aa		31.81	■■■□□ 2.68
FANCA-222	ENST00000567205	EIF4G1	Q04637	1599 aa	Known RBP	31.78	■■■□□ 2.68
FANCA-222	ENST00000567205	CECR2	Q9BXF3	1484 aa		31.69	■■■□□ 2.66
FANCA-222	ENST00000567205	SMARCA4	P51532	1647 aa		30.86	■■■□□ 2.53
FANCA-222	ENST00000567205	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	30.85	■■■□□ 2.53
FANCA-222	ENST00000567205	NCAPD3	P42695	1498 aa		30.82	■■■□□ 2.53
FANCA-222	ENST00000567205	ATAD2B	Q9ULI0	1458 aa		30.71	■■■□□ 2.51
FANCA-222	ENST00000567205	SMARCA2	P51531	1590 aa		30.69	■■■□□ 2.5
FANCA-222	ENST00000567205	HMGXB3	Q12766	1538 aa		30.62	■■■□□ 2.49
FANCA-222	ENST00000567205	PEG3	Q9GZU2	1588 aa		30.58	■■■□□ 2.49
FANCA-222	ENST00000567205	MROH2B	Q7Z745	1585 aa		30.52	■■■□□ 2.48
FANCA-222	ENST00000567205	BAZ1B	Q9UIG0	1483 aa	Known RBP	30.42	■■■□□ 2.46
FANCA-222	ENST00000567205	ERCC6	Q03468	1493 aa		30.37	■■■□□ 2.45
FANCA-222	ENST00000567205	CUX2	O14529	1486 aa		30.36	■■■□□ 2.45
FANCA-222	ENST00000567205	WIZ	O95785	1651 aa		30.27	■■■□□ 2.44
FANCA-222	ENST00000567205	NES	P48681	1621 aa		30.22	■■■□□ 2.43
FANCA-222	ENST00000567205	DNAJC5	Q9H3Z4	198 aa		30.18	■■■□□ 2.42
FANCA-222	ENST00000567205	RSF1	Q96T23	1441 aa	Predicted RBP	30.16	■■■□□ 2.42
FANCA-222	ENST00000567205	LAMC3	Q9Y6N6	1575 aa		30.13	■■■□□ 2.41
FANCA-222	ENST00000567205	TOP2A	P11388	1531 aa	Known RBP	30.01	■■■□□ 2.39
FANCA-222	ENST00000567205	THOC2	Q8NI27	1593 aa	Known RBP	29.96	■■■□□ 2.39
FANCA-222	ENST00000567205	PDS5B	Q9NTI5	1447 aa		29.93	■■■□□ 2.38
FANCA-222	ENST00000567205	KIF21A	Q7Z4S6	1674 aa		29.87	■■■□□ 2.37
FANCA-222	ENST00000567205	CADPS	Q9ULU8	1353 aa		29.87	■■■□□ 2.37
FANCA-222	ENST00000567205	MRC2	Q9UBG0	1479 aa		29.65	■■■□□ 2.34
FANCA-222	ENST00000567205	PRDM2	Q13029	1718 aa		29.65	■■■□□ 2.34
FANCA-222	ENST00000567205	WDR62	O43379	1518 aa		29.6	■■■□□ 2.33
FANCA-222	ENST00000567205	CFTR	P13569	1480 aa		29.56	■■■□□ 2.32
FANCA-222	ENST00000567205	CEP164	Q9UPV0	1460 aa		29.55	■■■□□ 2.32
FANCA-222	ENST00000567205	CCDC88B	A6NC98	1476 aa		29.51	■■■□□ 2.31
FANCA-222	ENST00000567205	FANCD2	Q9BXW9	1451 aa		29.51	■■■□□ 2.31
FANCA-222	ENST00000567205	SUPT5H	O00267	1087 aa	Known RBP	29.32	■■■□□ 2.28
FANCA-222	ENST00000567205	URB2	Q14146	1524 aa	Known RBP	29.25	■■■□□ 2.27
FANCA-222	ENST00000567205	ABCC8	Q09428	1581 aa		29.01	■■■□□ 2.24
FANCA-222	ENST00000567205	IFT140	Q96RY7	1462 aa		28.97	■■■□□ 2.23
FANCA-222	ENST00000567205	TOPBP1	Q92547	1522 aa		28.97	■■■□□ 2.23
FANCA-222	ENST00000567205	DNMBP	Q6XZF7	1577 aa		28.95	■■■□□ 2.22
FANCA-222	ENST00000567205	OSCAR	Q8IYS5	282 aa		28.94	■■■□□ 2.22
FANCA-222	ENST00000567205	ZNF608	Q9ULD9	1512 aa	Predicted RBP	28.84	■■■□□ 2.21
FANCA-222	ENST00000567205	TRIM41	Q8WV44	630 aa		28.79	■■■□□ 2.2
FANCA-222	ENST00000567205	EIF4G3	O43432	1585 aa	Known RBP	28.74	■■■□□ 2.19
FANCA-222	ENST00000567205	TARBP1	Q13395	1621 aa	Known RBP	28.72	■■■□□ 2.19
FANCA-222	ENST00000567205	POLA1	P09884	1462 aa	Predicted RBP	28.67	■■■□□ 2.18
FANCA-222	ENST00000567205	CUX1	P39880	1505 aa		28.66	■■■□□ 2.18
FANCA-222	ENST00000567205	AQR	O60306	1485 aa	Known RBP eCLIP	28.59	■■■□□ 2.17	2e-12	■■■■□ 25
FANCA-222	ENST00000567205	BIVM-ERCC5	R4GMW8	1640 aa		28.58	■■■□□ 2.17
FANCA-222	ENST00000567205	FGD5	Q6ZNL6	1462 aa		28.58	■■■□□ 2.17
FANCA-222	ENST00000567205	WDR97	A6NE52	1622 aa		28.58	■■■□□ 2.17
FANCA-222	ENST00000567205	RIMBP3C	A6NJZ7	1639 aa		28.54	■■■□□ 2.16
FANCA-222	ENST00000567205	RIMBP3B	A6NNM3	1639 aa		28.54	■■■□□ 2.16
FANCA-222	ENST00000567205	RIMBP3	Q9UFD9	1639 aa		28.54	■■■□□ 2.16
FANCA-222	ENST00000567205	SOGA1	O94964	1423 aa		28.54	■■■□□ 2.16
FANCA-222	ENST00000567205	TOP2B	Q02880	1626 aa		28.54	■■■□□ 2.16
FANCA-222	ENST00000567205	RAD54L2	Q9Y4B4	1467 aa		28.52	■■■□□ 2.16
FANCA-222	ENST00000567205	WRN	Q14191	1432 aa	Predicted RBP eCLIP	28.51	■■■□□ 2.15
FANCA-222	ENST00000567205	CHD1	O14646	1710 aa		28.49	■■■□□ 2.15
FANCA-222	ENST00000567205	ARHGEF11	O15085	1522 aa		28.47	■■■□□ 2.15
FANCA-222	ENST00000567205	SYNJ1	O43426	1573 aa		28.45	■■■□□ 2.14
FANCA-222	ENST00000567205	TDRD9	Q8NDG6	1382 aa	Known RBP	28.43	■■■□□ 2.14
FANCA-222	ENST00000567205	FBLN2	P98095	1184 aa		28.35	■■■□□ 2.13
FANCA-222	ENST00000567205	ABCA10	Q8WWZ4	1543 aa		28.34	■■■□□ 2.13
FANCA-222	ENST00000567205	SNAPC4	Q5SXM2	1469 aa		28.33	■■■□□ 2.13
FANCA-222	ENST00000567205	MAGI1	Q96QZ7	1491 aa	Predicted RBP	28.33	■■■□□ 2.13
FANCA-222	ENST00000567205	PBRM1	Q86U86	1689 aa		28.32	■■■□□ 2.12
FANCA-222	ENST00000567205	GRIN2B	Q13224	1484 aa		28.31	■■■□□ 2.12
FANCA-222	ENST00000567205	ABCA5	Q8WWZ7	1642 aa		28.29	■■■□□ 2.12
FANCA-222	ENST00000567205	CHMP7	Q8WUX9	453 aa	Predicted RBP	28.22	■■■□□ 2.11
FANCA-222	ENST00000567205	SYNJ2	O15056	1496 aa		28.21	■■■□□ 2.11
FANCA-222	ENST00000567205	GAPVD1	Q14C86	1478 aa		28.21	■■■□□ 2.11
FANCA-222	ENST00000567205	CLASP1	Q7Z460	1538 aa		28.2	■■■□□ 2.1
FANCA-222	ENST00000567205	CYB5RL	Q6IPT4	315 aa		28.2	■■■□□ 2.1
FANCA-222	ENST00000567205	ARAP1	Q96P48	1450 aa		28.18	■■■□□ 2.1
FANCA-222	ENST00000567205	ERICH3	Q5RHP9	1530 aa		28.06	■■■□□ 2.08
FANCA-222	ENST00000567205	ADAMTS12	P58397	1594 aa		28.01	■■■□□ 2.07
FANCA-222	ENST00000567205	KIF27	Q86VH2	1401 aa		27.94	■■■□□ 2.06
FANCA-222	ENST00000567205	GRIN2A	Q12879	1464 aa		27.94	■■■□□ 2.06
FANCA-222	ENST00000567205	CUL7	Q14999	1698 aa		27.91	■■■□□ 2.06
FANCA-222	ENST00000567205	FHAD1	B1AJZ9	1412 aa		27.89	■■■□□ 2.06
FANCA-222	ENST00000567205	NUP160	Q12769	1436 aa		27.85	■■■□□ 2.05
FANCA-222	ENST00000567205	TRH	P20396	242 aa	Predicted RBP	27.85	■■■□□ 2.05
FANCA-222	ENST00000567205	CEP170	Q5SW79	1584 aa		27.81	■■■□□ 2.04
FANCA-222	ENST00000567205	SHROOM2	Q13796	1616 aa		27.74	■■■□□ 2.03
FANCA-222	ENST00000567205	ERCC6L2	Q5T890	1561 aa		27.69	■■■□□ 2.02
FANCA-222	ENST00000567205	IGF1R	P08069	1367 aa		27.68	■■■□□ 2.02
FANCA-222	ENST00000567205	RUSC2	Q8N2Y8	1516 aa		27.6	■■■□□ 2.01

Retrieved 100 of 20,778 RNA–protein pairs in 68.9 ms