RNA–Protein interactions for RNA: ENST00000566808.2

CDH3-205, Transcript of cadherin 3, humanhuman

TSL 5

Gene CDH3, Length 573 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-205ENST00000566808 NISCHQ9Y2I1 1504 aa43.4■■■■■ 4.54
CDH3-205ENST00000566808 ABCC9O60706 1549 aa39.91■■■■□ 3.98
CDH3-205ENST00000566808 CCDC180Q9P1Z9 1646 aa39.42■■■■□ 3.9
CDH3-205ENST00000566808 DNAJC5BQ9UF47 199 aa37.94■■■■□ 3.66
CDH3-205ENST00000566808 RB1CC1Q8TDY2 1594 aa37.8■■■■□ 3.64
CDH3-205ENST00000566808 NACADO15069 1562 aa37.35■■■■□ 3.57
CDH3-205ENST00000566808 UNC13AQ9UPW8 1703 aa36.99■■■■□ 3.51
CDH3-205ENST00000566808 PABPN1Q86U42 306 aaKnown RBP eCLIP36.92■■■■□ 3.5
CDH3-205ENST00000566808 DCAF8L2P0C7V8 631 aa36.69■■■■□ 3.46
CDH3-205ENST00000566808 BICRAQ9NZM4 1560 aa36.69■■■■□ 3.46
CDH3-205ENST00000566808 MYO15BQ96JP2 1530 aa36.63■■■■□ 3.45
CDH3-205ENST00000566808 SHROOM4Q9ULL8 1493 aa36.24■■■■□ 3.39
CDH3-205ENST00000566808 CC2D2AQ9P2K1 1620 aa36.1■■■■□ 3.37
CDH3-205ENST00000566808 CECR2Q9BXF3 1484 aa36.06■■■■□ 3.36
CDH3-205ENST00000566808 DCAF1Q9Y4B6 1507 aa35.88■■■■□ 3.33
CDH3-205ENST00000566808 ZCCHC6Q5VYS8 1495 aaKnown RBP35.86■■■■□ 3.33
CDH3-205ENST00000566808 EIF4G1Q04637 1599 aaKnown RBP35.85■■■■□ 3.33
CDH3-205ENST00000566808 SCRIBQ14160 1630 aa35.75■■■■□ 3.31
CDH3-205ENST00000566808 DNAJC5Q9H3Z4 198 aa35.44■■■■□ 3.26
CDH3-205ENST00000566808 CUX2O14529 1486 aa34.8■■■■□ 3.16
CDH3-205ENST00000566808 ERCC6Q03468 1493 aa34.56■■■■□ 3.12
CDH3-205ENST00000566808 NCAPD3P42695 1498 aa34.43■■■■□ 3.1
CDH3-205ENST00000566808 ATAD2BQ9ULI0 1458 aa34.21■■■■□ 3.07
CDH3-205ENST00000566808 HMGXB3Q12766 1538 aa34.2■■■■□ 3.07
CDH3-205ENST00000566808 SMARCA2P51531 1590 aa34.15■■■■□ 3.06
CDH3-205ENST00000566808 NESP48681 1621 aa34.08■■■■□ 3.05
CDH3-205ENST00000566808 SMARCA4P51532 1647 aa34.07■■■■□ 3.04
CDH3-205ENST00000566808 THOC2Q8NI27 1593 aaKnown RBP34.02■■■■□ 3.04
CDH3-205ENST00000566808 BAZ1BQ9UIG0 1483 aaKnown RBP33.87■■■■□ 3.01
CDH3-205ENST00000566808 LAMC3Q9Y6N6 1575 aa33.85■■■■□ 3.01
CDH3-205ENST00000566808 BAZ1AQ9NRL2 1556 aaPredicted RBP33.79■■■■□ 3
CDH3-205ENST00000566808 PEG3Q9GZU2 1588 aa33.77■■■■□ 3
CDH3-205ENST00000566808 KIF21AQ7Z4S6 1674 aa33.74■■■□□ 2.99
CDH3-205ENST00000566808 PDS5BQ9NTI5 1447 aa33.6■■■□□ 2.97
CDH3-205ENST00000566808 TRIM41Q8WV44 630 aa33.54■■■□□ 2.96
CDH3-205ENST00000566808 MROH2BQ7Z745 1585 aa33.4■■■□□ 2.94
CDH3-205ENST00000566808 MRC2Q9UBG0 1479 aa33.38■■■□□ 2.93
CDH3-205ENST00000566808 WDR62O43379 1518 aa33.37■■■□□ 2.93
CDH3-205ENST00000566808 CADPSQ9ULU8 1353 aa33.3■■■□□ 2.92
CDH3-205ENST00000566808 CEP164Q9UPV0 1460 aa33.11■■■□□ 2.89
CDH3-205ENST00000566808 WIZO95785 1651 aa33■■■□□ 2.87
CDH3-205ENST00000566808 FANCD2Q9BXW9 1451 aa32.97■■■□□ 2.87
CDH3-205ENST00000566808 OSCARQ8IYS5 282 aa32.91■■■□□ 2.86
CDH3-205ENST00000566808 CFTRP13569 1480 aa32.82■■■□□ 2.84
CDH3-205ENST00000566808 URB2Q14146 1524 aaKnown RBP32.75■■■□□ 2.83
CDH3-205ENST00000566808 RIMBP3CA6NJZ7 1639 aa32.73■■■□□ 2.83
CDH3-205ENST00000566808 RIMBP3BA6NNM3 1639 aa32.73■■■□□ 2.83
CDH3-205ENST00000566808 RIMBP3Q9UFD9 1639 aa32.73■■■□□ 2.83
CDH3-205ENST00000566808 PRDM2Q13029 1718 aa32.63■■■□□ 2.81
CDH3-205ENST00000566808 TOP2AP11388 1531 aaKnown RBP32.58■■■□□ 2.81
CDH3-205ENST00000566808 ARHGEF11O15085 1522 aa32.54■■■□□ 2.8
CDH3-205ENST00000566808 IFT140Q96RY7 1462 aa32.46■■■□□ 2.79
CDH3-205ENST00000566808 ZNF608Q9ULD9 1512 aaPredicted RBP32.42■■■□□ 2.78
CDH3-205ENST00000566808 RSF1Q96T23 1441 aaPredicted RBP32.41■■■□□ 2.78
CDH3-205ENST00000566808 EIF4G3O43432 1585 aaKnown RBP32.33■■■□□ 2.77
CDH3-205ENST00000566808 TOPBP1Q92547 1522 aa32.28■■■□□ 2.76
CDH3-205ENST00000566808 CHD1O14646 1710 aa32.24■■■□□ 2.75
CDH3-205ENST00000566808 ABCC8Q09428 1581 aa32.18■■■□□ 2.74
CDH3-205ENST00000566808 CYB5RLQ6IPT4 315 aa32.16■■■□□ 2.74
CDH3-205ENST00000566808 ARAP1Q96P48 1450 aa32.16■■■□□ 2.74
CDH3-205ENST00000566808 DNMBPQ6XZF7 1577 aa32.15■■■□□ 2.74
CDH3-205ENST00000566808 CCDC88BA6NC98 1476 aa32.11■■■□□ 2.73
CDH3-205ENST00000566808 TARBP1Q13395 1621 aaKnown RBP32.09■■■□□ 2.73
CDH3-205ENST00000566808 TRHP20396 242 aaPredicted RBP32.05■■■□□ 2.72
CDH3-205ENST00000566808 AQRO60306 1485 aaKnown RBP eCLIP32■■■□□ 2.71
CDH3-205ENST00000566808 POLA1P09884 1462 aaPredicted RBP31.9■■■□□ 2.7
CDH3-205ENST00000566808 FBLN2P98095 1184 aa31.86■■■□□ 2.69
CDH3-205ENST00000566808 CLASP1Q7Z460 1538 aa31.83■■■□□ 2.69
CDH3-205ENST00000566808 WDR97A6NE52 1622 aa31.81■■■□□ 2.68
CDH3-205ENST00000566808 SYNJ1O43426 1573 aa31.74■■■□□ 2.67
CDH3-205ENST00000566808 SNAPC4Q5SXM2 1469 aa31.73■■■□□ 2.67
CDH3-205ENST00000566808 RAD54L2Q9Y4B4 1467 aa31.72■■■□□ 2.67
CDH3-205ENST00000566808 AEBP2Q6ZN18 517 aaPredicted RBP31.67■■■□□ 2.66
CDH3-205ENST00000566808 TDRD9Q8NDG6 1382 aaKnown RBP31.67■■■□□ 2.66
CDH3-205ENST00000566808 SOGA1O94964 1423 aa31.66■■■□□ 2.66
CDH3-205ENST00000566808 MAGI1Q96QZ7 1491 aaPredicted RBP31.66■■■□□ 2.66
CDH3-205ENST00000566808 FGD5Q6ZNL6 1462 aa31.59■■■□□ 2.65
CDH3-205ENST00000566808 GRIN2BQ13224 1484 aa31.55■■■□□ 2.64
CDH3-205ENST00000566808 SYNJ2O15056 1496 aa31.54■■■□□ 2.64
CDH3-205ENST00000566808 CHMP7Q8WUX9 453 aaPredicted RBP31.54■■■□□ 2.64
CDH3-205ENST00000566808 PBRM1Q86U86 1689 aa31.48■■■□□ 2.63
CDH3-205ENST00000566808 GAPVD1Q14C86 1478 aa31.47■■■□□ 2.63
CDH3-205ENST00000566808 CUX1P39880 1505 aa31.45■■■□□ 2.63
CDH3-205ENST00000566808 ABCA5Q8WWZ7 1642 aa31.3■■■□□ 2.6
CDH3-205ENST00000566808 ABCA10Q8WWZ4 1543 aa31.21■■■□□ 2.59
CDH3-205ENST00000566808 ERCC6L2Q5T890 1561 aa31.2■■■□□ 2.58
CDH3-205ENST00000566808 GRIN2AQ12879 1464 aa31.16■■■□□ 2.58
CDH3-205ENST00000566808 CEP170Q5SW79 1584 aa31.13■■■□□ 2.57
CDH3-205ENST00000566808 ADAMTS12P58397 1594 aa31.12■■■□□ 2.57
CDH3-205ENST00000566808 SHROOM2Q13796 1616 aa31.09■■■□□ 2.57
CDH3-205ENST00000566808 KIF13AQ9H1H9 1805 aa31.09■■■□□ 2.57
CDH3-205ENST00000566808 NUP160Q12769 1436 aa31.07■■■□□ 2.57
CDH3-205ENST00000566808 WRNQ14191 1432 aaPredicted RBP eCLIP30.9■■■□□ 2.54
CDH3-205ENST00000566808 FHAD1B1AJZ9 1412 aa30.9■■■□□ 2.54
CDH3-205ENST00000566808 BIVM-ERCC5R4GMW8 1640 aa30.84■■■□□ 2.53
CDH3-205ENST00000566808 ERICH3Q5RHP9 1530 aa30.83■■■□□ 2.53
CDH3-205ENST00000566808 TOP2BQ02880 1626 aa30.8■■■□□ 2.52
CDH3-205ENST00000566808 PRG4Q92954 1404 aaPredicted RBP30.77■■■□□ 2.52
CDH3-205ENST00000566808 ABCC10Q5T3U5 1492 aa30.76■■■□□ 2.51
CDH3-205ENST00000566808 MAPKBP1O60336 1514 aa30.74■■■□□ 2.51
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms