RNA–Protein interactions for RNA: ENST00000566703.1

RNF40-209, Transcript of ring finger protein 40, humanhuman

TSL 3

Gene RNF40, Length 808 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40-209ENST00000566703 NISCHQ9Y2I1 1504 aa37.41■■■■□ 3.58
RNF40-209ENST00000566703 CCDC180Q9P1Z9 1646 aa33.47■■■□□ 2.95
RNF40-209ENST00000566703 ABCC9O60706 1549 aa33.43■■■□□ 2.94
RNF40-209ENST00000566703 RB1CC1Q8TDY2 1594 aa31.88■■■□□ 2.69
RNF40-209ENST00000566703 NACADO15069 1562 aa31.72■■■□□ 2.67
RNF40-209ENST00000566703 DCAF8L2P0C7V8 631 aa31.57■■■□□ 2.64
RNF40-209ENST00000566703 DNAJC5BQ9UF47 199 aa31.38■■■□□ 2.61
RNF40-209ENST00000566703 MYO15BQ96JP2 1530 aa31.36■■■□□ 2.61
RNF40-209ENST00000566703 PABPN1Q86U42 306 aaKnown RBP eCLIP31.19■■■□□ 2.58
RNF40-209ENST00000566703 UNC13AQ9UPW8 1703 aa31■■■□□ 2.55
RNF40-209ENST00000566703 ZCCHC6Q5VYS8 1495 aaKnown RBP30.98■■■□□ 2.55
RNF40-209ENST00000566703 DCAF1Q9Y4B6 1507 aa30.95■■■□□ 2.55
RNF40-209ENST00000566703 BICRAQ9NZM4 1560 aa30.91■■■□□ 2.54
RNF40-209ENST00000566703 SHROOM4Q9ULL8 1493 aa30.61■■■□□ 2.49
RNF40-209ENST00000566703 SCRIBQ14160 1630 aa30.44■■■□□ 2.46
RNF40-209ENST00000566703 CC2D2AQ9P2K1 1620 aa30.18■■■□□ 2.42
RNF40-209ENST00000566703 EIF4G1Q04637 1599 aaKnown RBP30.15■■■□□ 2.42
RNF40-209ENST00000566703 CECR2Q9BXF3 1484 aa30.15■■■□□ 2.42
RNF40-209ENST00000566703 NCAPD3P42695 1498 aa29.32■■■□□ 2.28
RNF40-209ENST00000566703 ATAD2BQ9ULI0 1458 aa29.19■■■□□ 2.26
RNF40-209ENST00000566703 SMARCA2P51531 1590 aa29.11■■■□□ 2.25
RNF40-209ENST00000566703 SMARCA4P51532 1647 aa29.1■■■□□ 2.25
RNF40-209ENST00000566703 HMGXB3Q12766 1538 aa29.03■■■□□ 2.24
RNF40-209ENST00000566703 BAZ1AQ9NRL2 1556 aaPredicted RBP29.02■■■□□ 2.24
RNF40-209ENST00000566703 ERCC6Q03468 1493 aa28.89■■■□□ 2.22
RNF40-209ENST00000566703 BAZ1BQ9UIG0 1483 aaKnown RBP28.88■■■□□ 2.21
RNF40-209ENST00000566703 PEG3Q9GZU2 1588 aa28.88■■■□□ 2.21
RNF40-209ENST00000566703 CUX2O14529 1486 aa28.86■■■□□ 2.21
RNF40-209ENST00000566703 DNAJC5Q9H3Z4 198 aa28.85■■■□□ 2.21
RNF40-209ENST00000566703 MROH2BQ7Z745 1585 aa28.78■■■□□ 2.2
RNF40-209ENST00000566703 NESP48681 1621 aa28.72■■■□□ 2.19
RNF40-209ENST00000566703 LAMC3Q9Y6N6 1575 aa28.58■■■□□ 2.17
RNF40-209ENST00000566703 PDS5BQ9NTI5 1447 aa28.49■■■□□ 2.15
RNF40-209ENST00000566703 CADPSQ9ULU8 1353 aa28.43■■■□□ 2.14
RNF40-209ENST00000566703 THOC2Q8NI27 1593 aaKnown RBP28.38■■■□□ 2.13
RNF40-209ENST00000566703 WIZO95785 1651 aa28.38■■■□□ 2.13
RNF40-209ENST00000566703 KIF21AQ7Z4S6 1674 aa28.27■■■□□ 2.12
RNF40-209ENST00000566703 RSF1Q96T23 1441 aaPredicted RBP28.26■■■□□ 2.12
RNF40-209ENST00000566703 MRC2Q9UBG0 1479 aa28.16■■■□□ 2.1
RNF40-209ENST00000566703 CFTRP13569 1480 aa28.09■■■□□ 2.09
RNF40-209ENST00000566703 TOP2AP11388 1531 aaKnown RBP28.08■■■□□ 2.09
RNF40-209ENST00000566703 WDR62O43379 1518 aa28.08■■■□□ 2.08
RNF40-209ENST00000566703 CEP164Q9UPV0 1460 aa28.07■■■□□ 2.08
RNF40-209ENST00000566703 FANCD2Q9BXW9 1451 aa28.05■■■□□ 2.08
RNF40-209ENST00000566703 CCDC88BA6NC98 1476 aa27.8■■■□□ 2.04
RNF40-209ENST00000566703 URB2Q14146 1524 aaKnown RBP27.78■■■□□ 2.04
RNF40-209ENST00000566703 OSCARQ8IYS5 282 aa27.64■■■□□ 2.02
RNF40-209ENST00000566703 PRDM2Q13029 1718 aa27.64■■■□□ 2.01
RNF40-209ENST00000566703 ABCC8Q09428 1581 aa27.55■■■□□ 2
RNF40-209ENST00000566703 IFT140Q96RY7 1462 aa27.54■■■□□ 2
RNF40-209ENST00000566703 TRIM41Q8WV44 630 aa27.51■■□□□ 1.99
RNF40-209ENST00000566703 TOPBP1Q92547 1522 aa27.51■■□□□ 1.99
RNF40-209ENST00000566703 ZNF608Q9ULD9 1512 aaPredicted RBP27.42■■□□□ 1.98
RNF40-209ENST00000566703 DNMBPQ6XZF7 1577 aa27.39■■□□□ 1.98
RNF40-209ENST00000566703 POLA1P09884 1462 aaPredicted RBP27.23■■□□□ 1.95
RNF40-209ENST00000566703 TARBP1Q13395 1621 aaKnown RBP27.23■■□□□ 1.95
RNF40-209ENST00000566703 EIF4G3O43432 1585 aaKnown RBP27.22■■□□□ 1.95
RNF40-209ENST00000566703 AQRO60306 1485 aaKnown RBP eCLIP27.21■■□□□ 1.954e-6■■■■■ 30.5
RNF40-209ENST00000566703 SOGA1O94964 1423 aa27.17■■□□□ 1.94
RNF40-209ENST00000566703 RAD54L2Q9Y4B4 1467 aa27.12■■□□□ 1.93
RNF40-209ENST00000566703 RIMBP3CA6NJZ7 1639 aa27.08■■□□□ 1.93
RNF40-209ENST00000566703 RIMBP3BA6NNM3 1639 aa27.08■■□□□ 1.93
RNF40-209ENST00000566703 RIMBP3Q9UFD9 1639 aa27.08■■□□□ 1.93
RNF40-209ENST00000566703 TDRD9Q8NDG6 1382 aaKnown RBP27.08■■□□□ 1.93
RNF40-209ENST00000566703 FBLN2P98095 1184 aa27.06■■□□□ 1.92
RNF40-209ENST00000566703 FGD5Q6ZNL6 1462 aa27.06■■□□□ 1.92
RNF40-209ENST00000566703 ARHGEF11O15085 1522 aa27.06■■□□□ 1.92
RNF40-209ENST00000566703 SUPT5HO00267 1087 aaKnown RBP27.04■■□□□ 1.92
RNF40-209ENST00000566703 CUX1P39880 1505 aa27.03■■□□□ 1.92
RNF40-209ENST00000566703 WDR97A6NE52 1622 aa27.01■■□□□ 1.92
RNF40-209ENST00000566703 CHD1O14646 1710 aa26.96■■□□□ 1.91
RNF40-209ENST00000566703 CYB5RLQ6IPT4 315 aa26.94■■□□□ 1.9
RNF40-209ENST00000566703 CHMP7Q8WUX9 453 aaPredicted RBP26.92■■□□□ 1.9
RNF40-209ENST00000566703 GRIN2BQ13224 1484 aa26.91■■□□□ 1.9
RNF40-209ENST00000566703 SNAPC4Q5SXM2 1469 aa26.91■■□□□ 1.9
RNF40-209ENST00000566703 MAGI1Q96QZ7 1491 aaPredicted RBP26.9■■□□□ 1.9
RNF40-209ENST00000566703 GAPVD1Q14C86 1478 aa26.81■■□□□ 1.88
RNF40-209ENST00000566703 SYNJ2O15056 1496 aa26.8■■□□□ 1.88
RNF40-209ENST00000566703 ABCA10Q8WWZ4 1543 aa26.8■■□□□ 1.88
RNF40-209ENST00000566703 ARAP1Q96P48 1450 aa26.79■■□□□ 1.88
RNF40-209ENST00000566703 SYNJ1O43426 1573 aa26.76■■□□□ 1.87
RNF40-209ENST00000566703 CLASP1Q7Z460 1538 aa26.75■■□□□ 1.87
RNF40-209ENST00000566703 WRNQ14191 1432 aaPredicted RBP eCLIP26.73■■□□□ 1.87
RNF40-209ENST00000566703 ABCA5Q8WWZ7 1642 aa26.67■■□□□ 1.86
RNF40-209ENST00000566703 PBRM1Q86U86 1689 aa26.65■■□□□ 1.86
RNF40-209ENST00000566703 TOP2BQ02880 1626 aa26.61■■□□□ 1.85
RNF40-209ENST00000566703 TRHP20396 242 aaPredicted RBP26.6■■□□□ 1.85
RNF40-209ENST00000566703 BIVM-ERCC5R4GMW8 1640 aa26.59■■□□□ 1.85
RNF40-209ENST00000566703 GRIN2AQ12879 1464 aa26.53■■□□□ 1.84
RNF40-209ENST00000566703 FHAD1B1AJZ9 1412 aa26.5■■□□□ 1.83
RNF40-209ENST00000566703 NUP160Q12769 1436 aa26.48■■□□□ 1.83
RNF40-209ENST00000566703 ADAMTS12P58397 1594 aa26.46■■□□□ 1.83
RNF40-209ENST00000566703 ERICH3Q5RHP9 1530 aa26.45■■□□□ 1.83
RNF40-209ENST00000566703 CEP170Q5SW79 1584 aa26.37■■□□□ 1.81
RNF40-209ENST00000566703 ERCC6L2Q5T890 1561 aa26.29■■□□□ 1.8
RNF40-209ENST00000566703 JPH4Q96JJ6 628 aa26.28■■□□□ 1.8
RNF40-209ENST00000566703 SHROOM2Q13796 1616 aa26.28■■□□□ 1.8
RNF40-209ENST00000566703 PRG4Q92954 1404 aaPredicted RBP26.2■■□□□ 1.78
RNF40-209ENST00000566703 IGF1RP08069 1367 aa26.19■■□□□ 1.78
RNF40-209ENST00000566703 KIF27Q86VH2 1401 aa26.18■■□□□ 1.78
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms