RNA–Protein interactions for RNA: ENST00000566561.1

KLHDC4-216, Transcript of kelch domain containing 4, humanhuman

TSL 4

Gene KLHDC4, Length 564 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
KLHDC4-216ENST00000566561 NISCHQ9Y2I1 1504 aa30.37■■■□□ 2.45
KLHDC4-216ENST00000566561 ABCC9O60706 1549 aa27.52■■■□□ 2
KLHDC4-216ENST00000566561 CCDC180Q9P1Z9 1646 aa27.38■■□□□ 1.97
KLHDC4-216ENST00000566561 RB1CC1Q8TDY2 1594 aa26.16■■□□□ 1.78
KLHDC4-216ENST00000566561 DNAJC5BQ9UF47 199 aa25.94■■□□□ 1.74
KLHDC4-216ENST00000566561 NACADO15069 1562 aa25.88■■□□□ 1.73
KLHDC4-216ENST00000566561 DCAF8L2P0C7V8 631 aa25.67■■□□□ 1.7
KLHDC4-216ENST00000566561 UNC13AQ9UPW8 1703 aa25.63■■□□□ 1.69
KLHDC4-216ENST00000566561 PABPN1Q86U42 306 aaKnown RBP eCLIP25.48■■□□□ 1.67
KLHDC4-216ENST00000566561 MYO15BQ96JP2 1530 aa25.4■■□□□ 1.66
KLHDC4-216ENST00000566561 BICRAQ9NZM4 1560 aa25.34■■□□□ 1.65
KLHDC4-216ENST00000566561 ZCCHC6Q5VYS8 1495 aaKnown RBP25.22■■□□□ 1.63
KLHDC4-216ENST00000566561 DCAF1Q9Y4B6 1507 aa25.07■■□□□ 1.6
KLHDC4-216ENST00000566561 SHROOM4Q9ULL8 1493 aa25.07■■□□□ 1.6
KLHDC4-216ENST00000566561 CC2D2AQ9P2K1 1620 aa24.9■■□□□ 1.58
KLHDC4-216ENST00000566561 CECR2Q9BXF3 1484 aa24.85■■□□□ 1.57
KLHDC4-216ENST00000566561 SCRIBQ14160 1630 aa24.85■■□□□ 1.57
KLHDC4-216ENST00000566561 EIF4G1Q04637 1599 aaKnown RBP24.78■■□□□ 1.56
KLHDC4-216ENST00000566561 DNAJC5Q9H3Z4 198 aa24.13■■□□□ 1.45
KLHDC4-216ENST00000566561 CUX2O14529 1486 aa23.94■■□□□ 1.42
KLHDC4-216ENST00000566561 ERCC6Q03468 1493 aa23.86■■□□□ 1.41
KLHDC4-216ENST00000566561 NCAPD3P42695 1498 aa23.81■■□□□ 1.4
KLHDC4-216ENST00000566561 HMGXB3Q12766 1538 aa23.71■■□□□ 1.39
KLHDC4-216ENST00000566561 SMARCA2P51531 1590 aa23.7■■□□□ 1.38
KLHDC4-216ENST00000566561 ATAD2BQ9ULI0 1458 aa23.7■■□□□ 1.38
KLHDC4-216ENST00000566561 SMARCA4P51532 1647 aa23.68■■□□□ 1.38
KLHDC4-216ENST00000566561 BAZ1AQ9NRL2 1556 aaPredicted RBP23.56■■□□□ 1.36
KLHDC4-216ENST00000566561 NESP48681 1621 aa23.54■■□□□ 1.36
KLHDC4-216ENST00000566561 BAZ1BQ9UIG0 1483 aaKnown RBP23.51■■□□□ 1.35
KLHDC4-216ENST00000566561 THOC2Q8NI27 1593 aaKnown RBP23.48■■□□□ 1.35
KLHDC4-216ENST00000566561 PEG3Q9GZU2 1588 aa23.44■■□□□ 1.34
KLHDC4-216ENST00000566561 LAMC3Q9Y6N6 1575 aa23.43■■□□□ 1.34
KLHDC4-216ENST00000566561 MROH2BQ7Z745 1585 aa23.41■■□□□ 1.34
KLHDC4-216ENST00000566561 KIF21AQ7Z4S6 1674 aa23.36■■□□□ 1.33
KLHDC4-216ENST00000566561 PDS5BQ9NTI5 1447 aa23.25■■□□□ 1.31
KLHDC4-216ENST00000566561 WIZO95785 1651 aa23.12■■□□□ 1.29
KLHDC4-216ENST00000566561 MRC2Q9UBG0 1479 aa23.09■■□□□ 1.29
KLHDC4-216ENST00000566561 CADPSQ9ULU8 1353 aa23.06■■□□□ 1.28
KLHDC4-216ENST00000566561 WDR62O43379 1518 aa23.06■■□□□ 1.28
KLHDC4-216ENST00000566561 RSF1Q96T23 1441 aaPredicted RBP23.06■■□□□ 1.28
KLHDC4-216ENST00000566561 TRIM41Q8WV44 630 aa22.97■■□□□ 1.27
KLHDC4-216ENST00000566561 CEP164Q9UPV0 1460 aa22.94■■□□□ 1.26
KLHDC4-216ENST00000566561 TOP2AP11388 1531 aaKnown RBP22.87■■□□□ 1.25
KLHDC4-216ENST00000566561 FANCD2Q9BXW9 1451 aa22.85■■□□□ 1.25
KLHDC4-216ENST00000566561 CFTRP13569 1480 aa22.76■■□□□ 1.23
KLHDC4-216ENST00000566561 PRDM2Q13029 1718 aa22.73■■□□□ 1.23
KLHDC4-216ENST00000566561 URB2Q14146 1524 aaKnown RBP22.67■■□□□ 1.22
KLHDC4-216ENST00000566561 OSCARQ8IYS5 282 aa22.66■■□□□ 1.22
KLHDC4-216ENST00000566561 CCDC88BA6NC98 1476 aa22.63■■□□□ 1.21
KLHDC4-216ENST00000566561 RIMBP3CA6NJZ7 1639 aa22.53■■□□□ 1.2
KLHDC4-216ENST00000566561 RIMBP3BA6NNM3 1639 aa22.53■■□□□ 1.2
KLHDC4-216ENST00000566561 RIMBP3Q9UFD9 1639 aa22.53■■□□□ 1.2
KLHDC4-216ENST00000566561 IFT140Q96RY7 1462 aa22.47■■□□□ 1.19
KLHDC4-216ENST00000566561 ZNF608Q9ULD9 1512 aaPredicted RBP22.41■■□□□ 1.18
KLHDC4-216ENST00000566561 ARHGEF11O15085 1522 aa22.4■■□□□ 1.18
KLHDC4-216ENST00000566561 EIF4G3O43432 1585 aaKnown RBP22.39■■□□□ 1.18
KLHDC4-216ENST00000566561 TOPBP1Q92547 1522 aa22.38■■□□□ 1.17
KLHDC4-216ENST00000566561 SUPT5HO00267 1087 aaKnown RBP22.35■■□□□ 1.17
KLHDC4-216ENST00000566561 ABCC8Q09428 1581 aa22.34■■□□□ 1.17
KLHDC4-216ENST00000566561 DNMBPQ6XZF7 1577 aa22.33■■□□□ 1.16
KLHDC4-216ENST00000566561 CHD1O14646 1710 aa22.32■■□□□ 1.16
KLHDC4-216ENST00000566561 TARBP1Q13395 1621 aaKnown RBP22.24■■□□□ 1.15
KLHDC4-216ENST00000566561 AQRO60306 1485 aaKnown RBP eCLIP22.15■■□□□ 1.142e-8■■■□□ 18.4
KLHDC4-216ENST00000566561 CYB5RLQ6IPT4 315 aa22.14■■□□□ 1.13
KLHDC4-216ENST00000566561 ARAP1Q96P48 1450 aa22.14■■□□□ 1.13
KLHDC4-216ENST00000566561 POLA1P09884 1462 aaPredicted RBP22.13■■□□□ 1.13
KLHDC4-216ENST00000566561 WDR97A6NE52 1622 aa22.08■■□□□ 1.13
KLHDC4-216ENST00000566561 FBLN2P98095 1184 aa22.07■■□□□ 1.12
KLHDC4-216ENST00000566561 TRHP20396 242 aaPredicted RBP22.04■■□□□ 1.12
KLHDC4-216ENST00000566561 SOGA1O94964 1423 aa22.01■■□□□ 1.11
KLHDC4-216ENST00000566561 RAD54L2Q9Y4B4 1467 aa22.01■■□□□ 1.11
KLHDC4-216ENST00000566561 SNAPC4Q5SXM2 1469 aa21.99■■□□□ 1.11
KLHDC4-216ENST00000566561 SYNJ1O43426 1573 aa21.99■■□□□ 1.11
KLHDC4-216ENST00000566561 CLASP1Q7Z460 1538 aa21.98■■□□□ 1.11
KLHDC4-216ENST00000566561 FGD5Q6ZNL6 1462 aa21.97■■□□□ 1.11
KLHDC4-216ENST00000566561 CUX1P39880 1505 aa21.97■■□□□ 1.11
KLHDC4-216ENST00000566561 TDRD9Q8NDG6 1382 aaKnown RBP21.95■■□□□ 1.1
KLHDC4-216ENST00000566561 MAGI1Q96QZ7 1491 aaPredicted RBP21.95■■□□□ 1.1
KLHDC4-216ENST00000566561 PBRM1Q86U86 1689 aa21.89■■□□□ 1.1
KLHDC4-216ENST00000566561 GRIN2BQ13224 1484 aa21.88■■□□□ 1.09
KLHDC4-216ENST00000566561 CHMP7Q8WUX9 453 aaPredicted RBP21.86■■□□□ 1.09
KLHDC4-216ENST00000566561 SYNJ2O15056 1496 aa21.85■■□□□ 1.09
KLHDC4-216ENST00000566561 WRNQ14191 1432 aaPredicted RBP eCLIP21.77■■□□□ 1.08
KLHDC4-216ENST00000566561 GAPVD1Q14C86 1478 aa21.75■■□□□ 1.07
KLHDC4-216ENST00000566561 ABCA5Q8WWZ7 1642 aa21.74■■□□□ 1.07
KLHDC4-216ENST00000566561 ABCA10Q8WWZ4 1543 aa21.72■■□□□ 1.07
KLHDC4-216ENST00000566561 TOP2BQ02880 1626 aa21.68■■□□□ 1.06
KLHDC4-216ENST00000566561 AEBP2Q6ZN18 517 aaPredicted RBP21.67■■□□□ 1.06
KLHDC4-216ENST00000566561 BIVM-ERCC5R4GMW8 1640 aa21.66■■□□□ 1.06
KLHDC4-216ENST00000566561 ADAMTS12P58397 1594 aa21.61■■□□□ 1.05
KLHDC4-216ENST00000566561 GRIN2AQ12879 1464 aa21.6■■□□□ 1.05
KLHDC4-216ENST00000566561 CEP170Q5SW79 1584 aa21.56■■□□□ 1.04
KLHDC4-216ENST00000566561 ERCC6L2Q5T890 1561 aa21.56■■□□□ 1.04
KLHDC4-216ENST00000566561 SHROOM2Q13796 1616 aa21.53■■□□□ 1.04
KLHDC4-216ENST00000566561 NUP160Q12769 1436 aa21.52■■□□□ 1.04
KLHDC4-216ENST00000566561 KIF13AQ9H1H9 1805 aa21.47■■□□□ 1.03
KLHDC4-216ENST00000566561 FHAD1B1AJZ9 1412 aa21.46■■□□□ 1.03
KLHDC4-216ENST00000566561 ERICH3Q5RHP9 1530 aa21.45■■□□□ 1.02
KLHDC4-216ENST00000566561 KIF27Q86VH2 1401 aa21.34■■□□□ 1.01
KLHDC4-216ENST00000566561 PRG4Q92954 1404 aaPredicted RBP21.32■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 85.1 ms