RNA–Protein interactions for RNA: ENST00000566482.5

CNEP1R1-208, Transcript of CTD nuclear envelope phosphatase 1 regulatory subunit 1, humanhuman

TSL 1 (best)

Gene CNEP1R1, Length 826 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNEP1R1-208ENST00000566482 NISCHQ9Y2I1 1504 aa31.4■■■□□ 2.62
CNEP1R1-208ENST00000566482 CCDC180Q9P1Z9 1646 aa27.92■■■□□ 2.06
CNEP1R1-208ENST00000566482 ABCC9O60706 1549 aa27.37■■□□□ 1.97
CNEP1R1-208ENST00000566482 RB1CC1Q8TDY2 1594 aa26.3■■□□□ 1.8
CNEP1R1-208ENST00000566482 NACADO15069 1562 aa26.25■■□□□ 1.79
CNEP1R1-208ENST00000566482 DCAF8L2P0C7V8 631 aa26.24■■□□□ 1.79
CNEP1R1-208ENST00000566482 ZCCHC6Q5VYS8 1495 aaKnown RBP26.16■■□□□ 1.78
CNEP1R1-208ENST00000566482 MYO15BQ96JP2 1530 aa26.08■■□□□ 1.77
CNEP1R1-208ENST00000566482 DCAF1Q9Y4B6 1507 aa25.97■■□□□ 1.75
CNEP1R1-208ENST00000566482 UNC13AQ9UPW8 1703 aa25.71■■□□□ 1.71
CNEP1R1-208ENST00000566482 PABPN1Q86U42 306 aaKnown RBP eCLIP25.57■■□□□ 1.68
CNEP1R1-208ENST00000566482 BICRAQ9NZM4 1560 aa25.52■■□□□ 1.68
CNEP1R1-208ENST00000566482 SCRIBQ14160 1630 aa25.5■■□□□ 1.67
CNEP1R1-208ENST00000566482 SHROOM4Q9ULL8 1493 aa25.22■■□□□ 1.63
CNEP1R1-208ENST00000566482 DNAJC5BQ9UF47 199 aa25.15■■□□□ 1.62
CNEP1R1-208ENST00000566482 EIF4G1Q04637 1599 aaKnown RBP24.84■■□□□ 1.57
CNEP1R1-208ENST00000566482 CC2D2AQ9P2K1 1620 aa24.75■■□□□ 1.55
CNEP1R1-208ENST00000566482 CECR2Q9BXF3 1484 aa24.58■■□□□ 1.53
CNEP1R1-208ENST00000566482 SMARCA4P51532 1647 aa24.38■■□□□ 1.49
CNEP1R1-208ENST00000566482 BAZ1AQ9NRL2 1556 aaPredicted RBP24.33■■□□□ 1.49
CNEP1R1-208ENST00000566482 ATAD2BQ9ULI0 1458 aa24.25■■□□□ 1.47
CNEP1R1-208ENST00000566482 NCAPD3P42695 1498 aa24.23■■□□□ 1.47
CNEP1R1-208ENST00000566482 SMARCA2P51531 1590 aa24.22■■□□□ 1.47
CNEP1R1-208ENST00000566482 MROH2BQ7Z745 1585 aa24.21■■□□□ 1.47
CNEP1R1-208ENST00000566482 PEG3Q9GZU2 1588 aa24.12■■□□□ 1.45
CNEP1R1-208ENST00000566482 HMGXB3Q12766 1538 aa24.12■■□□□ 1.45
CNEP1R1-208ENST00000566482 BAZ1BQ9UIG0 1483 aaKnown RBP24.05■■□□□ 1.44
CNEP1R1-208ENST00000566482 WIZO95785 1651 aa23.95■■□□□ 1.42
CNEP1R1-208ENST00000566482 RSF1Q96T23 1441 aaPredicted RBP23.92■■□□□ 1.42
CNEP1R1-208ENST00000566482 NESP48681 1621 aa23.69■■□□□ 1.38
CNEP1R1-208ENST00000566482 TOP2AP11388 1531 aaKnown RBP23.69■■□□□ 1.38
CNEP1R1-208ENST00000566482 LAMC3Q9Y6N6 1575 aa23.6■■□□□ 1.37
CNEP1R1-208ENST00000566482 ERCC6Q03468 1493 aa23.59■■□□□ 1.37
CNEP1R1-208ENST00000566482 CADPSQ9ULU8 1353 aa23.52■■□□□ 1.36
CNEP1R1-208ENST00000566482 PDS5BQ9NTI5 1447 aa23.44■■□□□ 1.34
CNEP1R1-208ENST00000566482 CCDC88BA6NC98 1476 aa23.41■■□□□ 1.34
CNEP1R1-208ENST00000566482 KIF21AQ7Z4S6 1674 aa23.39■■□□□ 1.34
CNEP1R1-208ENST00000566482 CFTRP13569 1480 aa23.38■■□□□ 1.33
CNEP1R1-208ENST00000566482 CUX2O14529 1486 aa23.35■■□□□ 1.33
CNEP1R1-208ENST00000566482 THOC2Q8NI27 1593 aaKnown RBP23.33■■□□□ 1.33
CNEP1R1-208ENST00000566482 SUPT5HO00267 1087 aaKnown RBP23.29■■□□□ 1.32
CNEP1R1-208ENST00000566482 FANCD2Q9BXW9 1451 aa23.27■■□□□ 1.32
CNEP1R1-208ENST00000566482 CEP164Q9UPV0 1460 aa23.24■■□□□ 1.31
CNEP1R1-208ENST00000566482 MRC2Q9UBG0 1479 aa23.22■■□□□ 1.31
CNEP1R1-208ENST00000566482 PRDM2Q13029 1718 aa23.2■■□□□ 1.3
CNEP1R1-208ENST00000566482 WDR62O43379 1518 aa23.13■■□□□ 1.29
CNEP1R1-208ENST00000566482 URB2Q14146 1524 aaKnown RBP23.05■■□□□ 1.28
CNEP1R1-208ENST00000566482 TOPBP1Q92547 1522 aa22.89■■□□□ 1.26
CNEP1R1-208ENST00000566482 ABCC8Q09428 1581 aa22.86■■□□□ 1.25
CNEP1R1-208ENST00000566482 DNMBPQ6XZF7 1577 aa22.86■■□□□ 1.25
CNEP1R1-208ENST00000566482 IFT140Q96RY7 1462 aa22.75■■□□□ 1.23
CNEP1R1-208ENST00000566482 CUX1P39880 1505 aa22.72■■□□□ 1.23
CNEP1R1-208ENST00000566482 POLA1P09884 1462 aaPredicted RBP22.69■■□□□ 1.22
CNEP1R1-208ENST00000566482 ZNF608Q9ULD9 1512 aaPredicted RBP22.67■■□□□ 1.22
CNEP1R1-208ENST00000566482 DNAJC5Q9H3Z4 198 aa22.66■■□□□ 1.22
CNEP1R1-208ENST00000566482 TARBP1Q13395 1621 aaKnown RBP22.64■■□□□ 1.22
CNEP1R1-208ENST00000566482 AEBP2Q6ZN18 517 aaPredicted RBP22.64■■□□□ 1.21
CNEP1R1-208ENST00000566482 FGD5Q6ZNL6 1462 aa22.64■■□□□ 1.21
CNEP1R1-208ENST00000566482 RAD54L2Q9Y4B4 1467 aa22.6■■□□□ 1.21
CNEP1R1-208ENST00000566482 SOGA1O94964 1423 aa22.59■■□□□ 1.21
CNEP1R1-208ENST00000566482 EIF4G3O43432 1585 aaKnown RBP22.57■■□□□ 1.2
CNEP1R1-208ENST00000566482 WRNQ14191 1432 aaPredicted RBP eCLIP22.55■■□□□ 1.2
CNEP1R1-208ENST00000566482 AQRO60306 1485 aaKnown RBP eCLIP22.53■■□□□ 1.28e-7■■■□□ 16.1
CNEP1R1-208ENST00000566482 SYNJ1O43426 1573 aa22.5■■□□□ 1.19
CNEP1R1-208ENST00000566482 TOP2BQ02880 1626 aa22.5■■□□□ 1.19
CNEP1R1-208ENST00000566482 BIVM-ERCC5R4GMW8 1640 aa22.5■■□□□ 1.19
CNEP1R1-208ENST00000566482 TDRD9Q8NDG6 1382 aaKnown RBP22.48■■□□□ 1.19
CNEP1R1-208ENST00000566482 WDR97A6NE52 1622 aa22.46■■□□□ 1.19
CNEP1R1-208ENST00000566482 ABCA10Q8WWZ4 1543 aa22.41■■□□□ 1.18
CNEP1R1-208ENST00000566482 OSCARQ8IYS5 282 aa22.35■■□□□ 1.17
CNEP1R1-208ENST00000566482 GRIN2BQ13224 1484 aa22.34■■□□□ 1.17
CNEP1R1-208ENST00000566482 GAPVD1Q14C86 1478 aa22.34■■□□□ 1.17
CNEP1R1-208ENST00000566482 ABCA5Q8WWZ7 1642 aa22.33■■□□□ 1.17
CNEP1R1-208ENST00000566482 SNAPC4Q5SXM2 1469 aa22.33■■□□□ 1.16
CNEP1R1-208ENST00000566482 PBRM1Q86U86 1689 aa22.3■■□□□ 1.16
CNEP1R1-208ENST00000566482 CHD1O14646 1710 aa22.29■■□□□ 1.16
CNEP1R1-208ENST00000566482 MAGI1Q96QZ7 1491 aaPredicted RBP22.28■■□□□ 1.16
CNEP1R1-208ENST00000566482 FBLN2P98095 1184 aa22.25■■□□□ 1.15
CNEP1R1-208ENST00000566482 SYNJ2O15056 1496 aa22.19■■□□□ 1.14
CNEP1R1-208ENST00000566482 CHMP7Q8WUX9 453 aaPredicted RBP22.18■■□□□ 1.14
CNEP1R1-208ENST00000566482 ERICH3Q5RHP9 1530 aa22.14■■□□□ 1.13
CNEP1R1-208ENST00000566482 ADAMTS12P58397 1594 aa22.13■■□□□ 1.13
CNEP1R1-208ENST00000566482 FHAD1B1AJZ9 1412 aa22.07■■□□□ 1.12
CNEP1R1-208ENST00000566482 KIF27Q86VH2 1401 aa22.06■■□□□ 1.12
CNEP1R1-208ENST00000566482 CLASP1Q7Z460 1538 aa22.06■■□□□ 1.12
CNEP1R1-208ENST00000566482 GRIN2AQ12879 1464 aa22.05■■□□□ 1.12
CNEP1R1-208ENST00000566482 RIMBP3CA6NJZ7 1639 aa22.03■■□□□ 1.12
CNEP1R1-208ENST00000566482 RIMBP3BA6NNM3 1639 aa22.03■■□□□ 1.12
CNEP1R1-208ENST00000566482 RIMBP3Q9UFD9 1639 aa22.03■■□□□ 1.12
CNEP1R1-208ENST00000566482 ARHGEF11O15085 1522 aa22.02■■□□□ 1.12
CNEP1R1-208ENST00000566482 IGF1RP08069 1367 aa21.99■■□□□ 1.11
CNEP1R1-208ENST00000566482 TRIM41Q8WV44 630 aa21.97■■□□□ 1.11
CNEP1R1-208ENST00000566482 NUP160Q12769 1436 aa21.96■■□□□ 1.11
CNEP1R1-208ENST00000566482 CEP170Q5SW79 1584 aa21.95■■□□□ 1.11
CNEP1R1-208ENST00000566482 CUL7Q14999 1698 aa21.93■■□□□ 1.1
CNEP1R1-208ENST00000566482 RUSC2Q8N2Y8 1516 aa21.88■■□□□ 1.09
CNEP1R1-208ENST00000566482 ARAP1Q96P48 1450 aa21.86■■□□□ 1.09
CNEP1R1-208ENST00000566482 CARMIL1Q5VZK9 1371 aa21.86■■□□□ 1.09
CNEP1R1-208ENST00000566482 CYB5RLQ6IPT4 315 aa21.8■■□□□ 1.08
CNEP1R1-208ENST00000566482 SHROOM2Q13796 1616 aa21.8■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms