RNA–Protein interactions for RNA: ENST00000566333.1

CDH13-208, Transcript of cadherin 13, humanhuman

TSL 2

Gene CDH13, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH13-208ENST00000566333 NISCHQ9Y2I1 1504 aa19.8■□□□□ 0.76
CDH13-208ENST00000566333 CCDC180Q9P1Z9 1646 aa17.61■□□□□ 0.41
CDH13-208ENST00000566333 ABCC9O60706 1549 aa16.9■□□□□ 0.3
CDH13-208ENST00000566333 ZCCHC6Q5VYS8 1495 aaKnown RBP16.59■□□□□ 0.25
CDH13-208ENST00000566333 DCAF1Q9Y4B6 1507 aa16.43■□□□□ 0.22
CDH13-208ENST00000566333 NACADO15069 1562 aa16.42■□□□□ 0.22
CDH13-208ENST00000566333 MYO15BQ96JP2 1530 aa16.41■□□□□ 0.22
CDH13-208ENST00000566333 RB1CC1Q8TDY2 1594 aa16.38■□□□□ 0.21
CDH13-208ENST00000566333 DCAF8L2P0C7V8 631 aa16.21■□□□□ 0.19
CDH13-208ENST00000566333 UNC13AQ9UPW8 1703 aa16.19■□□□□ 0.18
CDH13-208ENST00000566333 SCRIBQ14160 1630 aa16.04■□□□□ 0.16
CDH13-208ENST00000566333 BICRAQ9NZM4 1560 aa15.96■□□□□ 0.15
CDH13-208ENST00000566333 SHROOM4Q9ULL8 1493 aa15.77■□□□□ 0.11
CDH13-208ENST00000566333 PABPN1Q86U42 306 aaKnown RBP eCLIP15.73■□□□□ 0.11
CDH13-208ENST00000566333 EIF4G1Q04637 1599 aaKnown RBP15.48■□□□□ 0.07
CDH13-208ENST00000566333 CECR2Q9BXF3 1484 aa15.39■□□□□ 0.05
CDH13-208ENST00000566333 SMARCA4P51532 1647 aa15.38■□□□□ 0.05
CDH13-208ENST00000566333 CC2D2AQ9P2K1 1620 aa15.36■□□□□ 0.05
CDH13-208ENST00000566333 BAZ1AQ9NRL2 1556 aaPredicted RBP15.33■□□□□ 0.05
CDH13-208ENST00000566333 MROH2BQ7Z745 1585 aa15.28■□□□□ 0.04
CDH13-208ENST00000566333 DNAJC5BQ9UF47 199 aa15.27■□□□□ 0.04
CDH13-208ENST00000566333 PEG3Q9GZU2 1588 aa15.24■□□□□ 0.03
CDH13-208ENST00000566333 SMARCA2P51531 1590 aa15.18■□□□□ 0.02
CDH13-208ENST00000566333 ATAD2BQ9ULI0 1458 aa15.16■□□□□ 0.02
CDH13-208ENST00000566333 WIZO95785 1651 aa15.16■□□□□ 0.02
CDH13-208ENST00000566333 HMGXB3Q12766 1538 aa15.14■□□□□ 0.01
CDH13-208ENST00000566333 RSF1Q96T23 1441 aaPredicted RBP15.14■□□□□ 0.01
CDH13-208ENST00000566333 NCAPD3P42695 1498 aa15.11■□□□□ 0.01
CDH13-208ENST00000566333 BAZ1BQ9UIG0 1483 aaKnown RBP15.05■□□□□ -0
CDH13-208ENST00000566333 TOP2AP11388 1531 aaKnown RBP14.99□□□□□ -0.01
CDH13-208ENST00000566333 AEBP2Q6ZN18 517 aaPredicted RBP14.93□□□□□ -0.02
CDH13-208ENST00000566333 CHIC1Q5VXU3 224 aa14.79□□□□□ -0.04
CDH13-208ENST00000566333 SUPT5HO00267 1087 aaKnown RBP14.75□□□□□ -0.05
CDH13-208ENST00000566333 CCDC88BA6NC98 1476 aa14.75□□□□□ -0.05
CDH13-208ENST00000566333 PRDM2Q13029 1718 aa14.74□□□□□ -0.05
CDH13-208ENST00000566333 LAMC3Q9Y6N6 1575 aa14.73□□□□□ -0.05
CDH13-208ENST00000566333 NESP48681 1621 aa14.72□□□□□ -0.05
CDH13-208ENST00000566333 KIF21AQ7Z4S6 1674 aa14.65□□□□□ -0.06
CDH13-208ENST00000566333 CFTRP13569 1480 aa14.65□□□□□ -0.06
CDH13-208ENST00000566333 CADPSQ9ULU8 1353 aa14.64□□□□□ -0.07
CDH13-208ENST00000566333 THOC2Q8NI27 1593 aaKnown RBP14.55□□□□□ -0.08
CDH13-208ENST00000566333 PDS5BQ9NTI5 1447 aa14.52□□□□□ -0.08
CDH13-208ENST00000566333 ERCC6Q03468 1493 aa14.51□□□□□ -0.09
CDH13-208ENST00000566333 FANCD2Q9BXW9 1451 aa14.51□□□□□ -0.09
CDH13-208ENST00000566333 CEP164Q9UPV0 1460 aa14.5□□□□□ -0.09
CDH13-208ENST00000566333 MRC2Q9UBG0 1479 aa14.44□□□□□ -0.1
CDH13-208ENST00000566333 WDR62O43379 1518 aa14.43□□□□□ -0.1
CDH13-208ENST00000566333 URB2Q14146 1524 aaKnown RBP14.41□□□□□ -0.1
CDH13-208ENST00000566333 DNMBPQ6XZF7 1577 aa14.37□□□□□ -0.11
CDH13-208ENST00000566333 CUX2O14529 1486 aa14.34□□□□□ -0.11
CDH13-208ENST00000566333 CUX1P39880 1505 aa14.34□□□□□ -0.11
CDH13-208ENST00000566333 ABCC8Q09428 1581 aa14.34□□□□□ -0.11
CDH13-208ENST00000566333 TOPBP1Q92547 1522 aa14.33□□□□□ -0.12
CDH13-208ENST00000566333 BIVM-ERCC5R4GMW8 1640 aa14.32□□□□□ -0.12
CDH13-208ENST00000566333 SYNJ1O43426 1573 aa14.3□□□□□ -0.12
CDH13-208ENST00000566333 TOP2BQ02880 1626 aa14.28□□□□□ -0.12
CDH13-208ENST00000566333 WRNQ14191 1432 aaPredicted RBP eCLIP14.24□□□□□ -0.13
CDH13-208ENST00000566333 WDR97A6NE52 1622 aa14.24□□□□□ -0.13
CDH13-208ENST00000566333 TARBP1Q13395 1621 aaKnown RBP14.23□□□□□ -0.13
CDH13-208ENST00000566333 POLA1P09884 1462 aaPredicted RBP14.23□□□□□ -0.13
CDH13-208ENST00000566333 FGD5Q6ZNL6 1462 aa14.22□□□□□ -0.13
CDH13-208ENST00000566333 IFT140Q96RY7 1462 aa14.16□□□□□ -0.14
CDH13-208ENST00000566333 EIF4G3O43432 1585 aaKnown RBP14.14□□□□□ -0.15
CDH13-208ENST00000566333 RAD54L2Q9Y4B4 1467 aa14.13□□□□□ -0.15
CDH13-208ENST00000566333 ZNF608Q9ULD9 1512 aaPredicted RBP14.11□□□□□ -0.15
CDH13-208ENST00000566333 ABCA5Q8WWZ7 1642 aa14.1□□□□□ -0.15
CDH13-208ENST00000566333 ABCA10Q8WWZ4 1543 aa14.1□□□□□ -0.15
CDH13-208ENST00000566333 SOGA1O94964 1423 aa14.08□□□□□ -0.15
CDH13-208ENST00000566333 PBRM1Q86U86 1689 aa14.07□□□□□ -0.16
CDH13-208ENST00000566333 AQRO60306 1485 aaKnown RBP eCLIP14□□□□□ -0.17
CDH13-208ENST00000566333 TDRD9Q8NDG6 1382 aaKnown RBP13.98□□□□□ -0.17
CDH13-208ENST00000566333 GAPVD1Q14C86 1478 aa13.98□□□□□ -0.17
CDH13-208ENST00000566333 ADAMTS12P58397 1594 aa13.95□□□□□ -0.18
CDH13-208ENST00000566333 CHD1O14646 1710 aa13.95□□□□□ -0.18
CDH13-208ENST00000566333 GRIN2BQ13224 1484 aa13.94□□□□□ -0.18
CDH13-208ENST00000566333 ERICH3Q5RHP9 1530 aa13.94□□□□□ -0.18
CDH13-208ENST00000566333 SNAPC4Q5SXM2 1469 aa13.93□□□□□ -0.18
CDH13-208ENST00000566333 MAGI1Q96QZ7 1491 aaPredicted RBP13.92□□□□□ -0.18
CDH13-208ENST00000566333 TRIM41Q8WV44 630 aa13.91□□□□□ -0.18
CDH13-208ENST00000566333 KIF27Q86VH2 1401 aa13.9□□□□□ -0.18
CDH13-208ENST00000566333 RUSC2Q8N2Y8 1516 aa13.9□□□□□ -0.19
CDH13-208ENST00000566333 CUL7Q14999 1698 aa13.89□□□□□ -0.19
CDH13-208ENST00000566333 SYNJ2O15056 1496 aa13.85□□□□□ -0.19
CDH13-208ENST00000566333 IGF1RP08069 1367 aa13.81□□□□□ -0.2
CDH13-208ENST00000566333 FHAD1B1AJZ9 1412 aa13.81□□□□□ -0.2
CDH13-208ENST00000566333 GRIN2AQ12879 1464 aa13.8□□□□□ -0.2
CDH13-208ENST00000566333 EEA1Q15075 1411 aa13.78□□□□□ -0.2
CDH13-208ENST00000566333 CEP170Q5SW79 1584 aa13.78□□□□□ -0.2
CDH13-208ENST00000566333 CLASP1Q7Z460 1538 aa13.76□□□□□ -0.21
CDH13-208ENST00000566333 PRXQ9BXM0 1461 aa13.74□□□□□ -0.21
CDH13-208ENST00000566333 NUP160Q12769 1436 aa13.73□□□□□ -0.21
CDH13-208ENST00000566333 KIF21BO75037 1637 aa13.73□□□□□ -0.21
CDH13-208ENST00000566333 CARMIL1Q5VZK9 1371 aa13.72□□□□□ -0.21
CDH13-208ENST00000566333 CTTNBP2Q8WZ74 1663 aa13.72□□□□□ -0.21
CDH13-208ENST00000566333 RAPGEF2Q9Y4G8 1499 aa13.7□□□□□ -0.22
CDH13-208ENST00000566333 SHROOM2Q13796 1616 aa13.68□□□□□ -0.22
CDH13-208ENST00000566333 CHMP7Q8WUX9 453 aaPredicted RBP13.68□□□□□ -0.22
CDH13-208ENST00000566333 FBLN2P98095 1184 aa13.66□□□□□ -0.22
CDH13-208ENST00000566333 CSRNP3Q8WYN3 585 aa13.64□□□□□ -0.23
CDH13-208ENST00000566333 IQGAP2Q13576 1575 aa13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms