RNA–Protein interactions for RNA: ENST00000566290.5

RAB40C-210, Transcript of RAB40C, member RAS oncogene family, humanhuman

TSL 3

Gene RAB40C, Length 753 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40C-210ENST00000566290 NISCHQ9Y2I1 1504 aa38.68■■■■□ 3.78
RAB40C-210ENST00000566290 ABCC9O60706 1549 aa35.36■■■■□ 3.25
RAB40C-210ENST00000566290 CCDC180Q9P1Z9 1646 aa34.37■■■■□ 3.09
RAB40C-210ENST00000566290 DNAJC5BQ9UF47 199 aa34.11■■■■□ 3.05
RAB40C-210ENST00000566290 RB1CC1Q8TDY2 1594 aa33.13■■■□□ 2.89
RAB40C-210ENST00000566290 PABPN1Q86U42 306 aaKnown RBP eCLIP32.86■■■□□ 2.85
RAB40C-210ENST00000566290 NACADO15069 1562 aa32.69■■■□□ 2.82
RAB40C-210ENST00000566290 DCAF8L2P0C7V8 631 aa32.53■■■□□ 2.8
RAB40C-210ENST00000566290 UNC13AQ9UPW8 1703 aa32.43■■■□□ 2.78
RAB40C-210ENST00000566290 BICRAQ9NZM4 1560 aa32.29■■■□□ 2.76
RAB40C-210ENST00000566290 ZCCHC6Q5VYS8 1495 aaKnown RBP32.2■■■□□ 2.75
RAB40C-210ENST00000566290 MYO15BQ96JP2 1530 aa32.09■■■□□ 2.73
RAB40C-210ENST00000566290 DCAF1Q9Y4B6 1507 aa31.93■■■□□ 2.7
RAB40C-210ENST00000566290 CECR2Q9BXF3 1484 aa31.91■■■□□ 2.7
RAB40C-210ENST00000566290 DNAJC5Q9H3Z4 198 aa31.9■■■□□ 2.7
RAB40C-210ENST00000566290 CC2D2AQ9P2K1 1620 aa31.85■■■□□ 2.69
RAB40C-210ENST00000566290 SHROOM4Q9ULL8 1493 aa31.59■■■□□ 2.65
RAB40C-210ENST00000566290 EIF4G1Q04637 1599 aaKnown RBP31.54■■■□□ 2.64
RAB40C-210ENST00000566290 SCRIBQ14160 1630 aa31.46■■■□□ 2.63
RAB40C-210ENST00000566290 CUX2O14529 1486 aa30.75■■■□□ 2.51
RAB40C-210ENST00000566290 ERCC6Q03468 1493 aa30.52■■■□□ 2.48
RAB40C-210ENST00000566290 NCAPD3P42695 1498 aa30.25■■■□□ 2.43
RAB40C-210ENST00000566290 TRIM41Q8WV44 630 aa30.15■■■□□ 2.42
RAB40C-210ENST00000566290 NESP48681 1621 aa30.14■■■□□ 2.41
RAB40C-210ENST00000566290 ATAD2BQ9ULI0 1458 aa30.05■■■□□ 2.4
RAB40C-210ENST00000566290 SMARCA4P51532 1647 aa30.04■■■□□ 2.4
RAB40C-210ENST00000566290 BAZ1AQ9NRL2 1556 aaPredicted RBP29.94■■■□□ 2.38
RAB40C-210ENST00000566290 THOC2Q8NI27 1593 aaKnown RBP29.91■■■□□ 2.38
RAB40C-210ENST00000566290 MROH2BQ7Z745 1585 aa29.87■■■□□ 2.37
RAB40C-210ENST00000566290 HMGXB3Q12766 1538 aa29.86■■■□□ 2.37
RAB40C-210ENST00000566290 SMARCA2P51531 1590 aa29.82■■■□□ 2.36
RAB40C-210ENST00000566290 PEG3Q9GZU2 1588 aa29.72■■■□□ 2.35
RAB40C-210ENST00000566290 BAZ1BQ9UIG0 1483 aaKnown RBP29.66■■■□□ 2.34
RAB40C-210ENST00000566290 LAMC3Q9Y6N6 1575 aa29.64■■■□□ 2.34
RAB40C-210ENST00000566290 KIF21AQ7Z4S6 1674 aa29.63■■■□□ 2.33
RAB40C-210ENST00000566290 PDS5BQ9NTI5 1447 aa29.54■■■□□ 2.32
RAB40C-210ENST00000566290 WIZO95785 1651 aa29.53■■■□□ 2.32
RAB40C-210ENST00000566290 RSF1Q96T23 1441 aaPredicted RBP29.45■■■□□ 2.31
RAB40C-210ENST00000566290 SUPT5HO00267 1087 aaKnown RBP29.37■■■□□ 2.29
RAB40C-210ENST00000566290 MRC2Q9UBG0 1479 aa29.35■■■□□ 2.29
RAB40C-210ENST00000566290 CADPSQ9ULU8 1353 aa29.3■■■□□ 2.28
RAB40C-210ENST00000566290 WDR62O43379 1518 aa29.3■■■□□ 2.28
RAB40C-210ENST00000566290 OSCARQ8IYS5 282 aa29.29■■■□□ 2.28
RAB40C-210ENST00000566290 TOP2AP11388 1531 aaKnown RBP29.15■■■□□ 2.26
RAB40C-210ENST00000566290 CEP164Q9UPV0 1460 aa29.04■■■□□ 2.24
RAB40C-210ENST00000566290 RIMBP3CA6NJZ7 1639 aa28.96■■■□□ 2.23
RAB40C-210ENST00000566290 RIMBP3BA6NNM3 1639 aa28.96■■■□□ 2.23
RAB40C-210ENST00000566290 RIMBP3Q9UFD9 1639 aa28.96■■■□□ 2.23
RAB40C-210ENST00000566290 FANCD2Q9BXW9 1451 aa28.96■■■□□ 2.23
RAB40C-210ENST00000566290 CCDC88BA6NC98 1476 aa28.85■■■□□ 2.21
RAB40C-210ENST00000566290 CFTRP13569 1480 aa28.84■■■□□ 2.21
RAB40C-210ENST00000566290 URB2Q14146 1524 aaKnown RBP28.8■■■□□ 2.2
RAB40C-210ENST00000566290 ARHGEF11O15085 1522 aa28.78■■■□□ 2.2
RAB40C-210ENST00000566290 CYB5RLQ6IPT4 315 aa28.72■■■□□ 2.19
RAB40C-210ENST00000566290 TRHP20396 242 aaPredicted RBP28.67■■■□□ 2.18
RAB40C-210ENST00000566290 ZNF608Q9ULD9 1512 aaPredicted RBP28.63■■■□□ 2.17
RAB40C-210ENST00000566290 PRDM2Q13029 1718 aa28.54■■■□□ 2.16
RAB40C-210ENST00000566290 IFT140Q96RY7 1462 aa28.5■■■□□ 2.15
RAB40C-210ENST00000566290 CHIC1Q5VXU3 224 aa28.47■■■□□ 2.15
RAB40C-210ENST00000566290 AEBP2Q6ZN18 517 aaPredicted RBP28.47■■■□□ 2.15
RAB40C-210ENST00000566290 ARAP1Q96P48 1450 aa28.45■■■□□ 2.14
RAB40C-210ENST00000566290 EIF4G3O43432 1585 aaKnown RBP28.33■■■□□ 2.12
RAB40C-210ENST00000566290 TOPBP1Q92547 1522 aa28.31■■■□□ 2.12
RAB40C-210ENST00000566290 CHD1O14646 1710 aa28.31■■■□□ 2.12
RAB40C-210ENST00000566290 FBLN2P98095 1184 aa28.27■■■□□ 2.12
RAB40C-210ENST00000566290 AQRO60306 1485 aaKnown RBP eCLIP28.27■■■□□ 2.122e-6■■■■■ 26.9
RAB40C-210ENST00000566290 DNMBPQ6XZF7 1577 aa28.16■■■□□ 2.1
RAB40C-210ENST00000566290 ABCC8Q09428 1581 aa28.11■■■□□ 2.09
RAB40C-210ENST00000566290 TARBP1Q13395 1621 aaKnown RBP28.11■■■□□ 2.09
RAB40C-210ENST00000566290 CUX1P39880 1505 aa28.02■■■□□ 2.08
RAB40C-210ENST00000566290 POLA1P09884 1462 aaPredicted RBP28.01■■■□□ 2.07
RAB40C-210ENST00000566290 CLASP1Q7Z460 1538 aa27.96■■■□□ 2.07
RAB40C-210ENST00000566290 TDRD9Q8NDG6 1382 aaKnown RBP27.96■■■□□ 2.07
RAB40C-210ENST00000566290 RAD54L2Q9Y4B4 1467 aa27.95■■■□□ 2.06
RAB40C-210ENST00000566290 FGD5Q6ZNL6 1462 aa27.91■■■□□ 2.06
RAB40C-210ENST00000566290 SNAPC4Q5SXM2 1469 aa27.89■■■□□ 2.05
RAB40C-210ENST00000566290 CHMP7Q8WUX9 453 aaPredicted RBP27.88■■■□□ 2.05
RAB40C-210ENST00000566290 SOGA1O94964 1423 aa27.86■■■□□ 2.05
RAB40C-210ENST00000566290 SYNJ1O43426 1573 aa27.82■■■□□ 2.04
RAB40C-210ENST00000566290 GAPVD1Q14C86 1478 aa27.76■■■□□ 2.04
RAB40C-210ENST00000566290 WRNQ14191 1432 aaPredicted RBP eCLIP27.73■■■□□ 2.03
RAB40C-210ENST00000566290 MAGI1Q96QZ7 1491 aaPredicted RBP27.71■■■□□ 2.03
RAB40C-210ENST00000566290 WDR97A6NE52 1622 aa27.68■■■□□ 2.02
RAB40C-210ENST00000566290 TOP2BQ02880 1626 aa27.68■■■□□ 2.02
RAB40C-210ENST00000566290 BIVM-ERCC5R4GMW8 1640 aa27.67■■■□□ 2.02
RAB40C-210ENST00000566290 SYNJ2O15056 1496 aa27.67■■■□□ 2.02
RAB40C-210ENST00000566290 GRIN2BQ13224 1484 aa27.66■■■□□ 2.02
RAB40C-210ENST00000566290 ABCA10Q8WWZ4 1543 aa27.61■■■□□ 2.01
RAB40C-210ENST00000566290 ERCC6L2Q5T890 1561 aa27.55■■■□□ 2
RAB40C-210ENST00000566290 ABCA5Q8WWZ7 1642 aa27.52■■■□□ 2
RAB40C-210ENST00000566290 EEA1Q15075 1411 aa27.5■■□□□ 1.99
RAB40C-210ENST00000566290 PBRM1Q86U86 1689 aa27.48■■□□□ 1.99
RAB40C-210ENST00000566290 ILDR1Q86SU0 546 aaPredicted RBP27.41■■□□□ 1.98
RAB40C-210ENST00000566290 KIF13AQ9H1H9 1805 aa27.39■■□□□ 1.98
RAB40C-210ENST00000566290 CEP170Q5SW79 1584 aa27.35■■□□□ 1.97
RAB40C-210ENST00000566290 GRIN2AQ12879 1464 aa27.31■■□□□ 1.96
RAB40C-210ENST00000566290 KDM4FA0A1W2PPD8 638 aa27.3■■□□□ 1.96
RAB40C-210ENST00000566290 ADAMTS12P58397 1594 aa27.26■■□□□ 1.96
RAB40C-210ENST00000566290 NUP160Q12769 1436 aa27.26■■□□□ 1.95
RAB40C-210ENST00000566290 ERICH3Q5RHP9 1530 aa27.24■■□□□ 1.95
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