RNA–Protein interactions for RNA: ENST00000566239.1

HACD3-208, Transcript of 3-hydroxyacyl-CoA dehydratase 3, humanhuman

TSL 2

Gene HACD3, Length 393 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HACD3-208ENST00000566239 NISCHQ9Y2I1 1504 aa33.24■■■□□ 2.91
HACD3-208ENST00000566239 CCDC180Q9P1Z9 1646 aa29.9■■■□□ 2.38
HACD3-208ENST00000566239 ABCC9O60706 1549 aa29.62■■■□□ 2.33
HACD3-208ENST00000566239 RB1CC1Q8TDY2 1594 aa28.35■■■□□ 2.13
HACD3-208ENST00000566239 NACADO15069 1562 aa28.17■■■□□ 2.1
HACD3-208ENST00000566239 DCAF8L2P0C7V8 631 aa27.96■■■□□ 2.07
HACD3-208ENST00000566239 MYO15BQ96JP2 1530 aa27.81■■■□□ 2.04
HACD3-208ENST00000566239 UNC13AQ9UPW8 1703 aa27.79■■■□□ 2.04
HACD3-208ENST00000566239 ZCCHC6Q5VYS8 1495 aaKnown RBP27.58■■■□□ 2.01
HACD3-208ENST00000566239 DNAJC5BQ9UF47 199 aa27.55■■■□□ 2
HACD3-208ENST00000566239 PABPN1Q86U42 306 aaKnown RBP eCLIP27.53■■■□□ 2
HACD3-208ENST00000566239 DCAF1Q9Y4B6 1507 aa27.5■■□□□ 1.99
HACD3-208ENST00000566239 BICRAQ9NZM4 1560 aa27.45■■□□□ 1.99
HACD3-208ENST00000566239 SCRIBQ14160 1630 aa27.17■■□□□ 1.94
HACD3-208ENST00000566239 SHROOM4Q9ULL8 1493 aa27.15■■□□□ 1.94
HACD3-208ENST00000566239 CC2D2AQ9P2K1 1620 aa26.82■■□□□ 1.88
HACD3-208ENST00000566239 EIF4G1Q04637 1599 aaKnown RBP26.79■■□□□ 1.88
HACD3-208ENST00000566239 CECR2Q9BXF3 1484 aa26.68■■□□□ 1.86
HACD3-208ENST00000566239 SMARCA4P51532 1647 aa25.95■■□□□ 1.74
HACD3-208ENST00000566239 NCAPD3P42695 1498 aa25.94■■□□□ 1.74
HACD3-208ENST00000566239 SMARCA2P51531 1590 aa25.88■■□□□ 1.73
HACD3-208ENST00000566239 ATAD2BQ9ULI0 1458 aa25.86■■□□□ 1.73
HACD3-208ENST00000566239 BAZ1AQ9NRL2 1556 aaPredicted RBP25.85■■□□□ 1.73
HACD3-208ENST00000566239 HMGXB3Q12766 1538 aa25.82■■□□□ 1.72
HACD3-208ENST00000566239 PEG3Q9GZU2 1588 aa25.69■■□□□ 1.7
HACD3-208ENST00000566239 BAZ1BQ9UIG0 1483 aaKnown RBP25.67■■□□□ 1.7
HACD3-208ENST00000566239 ERCC6Q03468 1493 aa25.6■■□□□ 1.69
HACD3-208ENST00000566239 MROH2BQ7Z745 1585 aa25.59■■□□□ 1.69
HACD3-208ENST00000566239 CUX2O14529 1486 aa25.52■■□□□ 1.68
HACD3-208ENST00000566239 NESP48681 1621 aa25.47■■□□□ 1.67
HACD3-208ENST00000566239 LAMC3Q9Y6N6 1575 aa25.41■■□□□ 1.66
HACD3-208ENST00000566239 WIZO95785 1651 aa25.36■■□□□ 1.65
HACD3-208ENST00000566239 KIF21AQ7Z4S6 1674 aa25.28■■□□□ 1.64
HACD3-208ENST00000566239 DNAJC5Q9H3Z4 198 aa25.27■■□□□ 1.64
HACD3-208ENST00000566239 THOC2Q8NI27 1593 aaKnown RBP25.27■■□□□ 1.64
HACD3-208ENST00000566239 PDS5BQ9NTI5 1447 aa25.2■■□□□ 1.63
HACD3-208ENST00000566239 CADPSQ9ULU8 1353 aa25.14■■□□□ 1.61
HACD3-208ENST00000566239 RSF1Q96T23 1441 aaPredicted RBP25.09■■□□□ 1.61
HACD3-208ENST00000566239 TOP2AP11388 1531 aaKnown RBP25.03■■□□□ 1.6
HACD3-208ENST00000566239 MRC2Q9UBG0 1479 aa24.98■■□□□ 1.59
HACD3-208ENST00000566239 WDR62O43379 1518 aa24.93■■□□□ 1.58
HACD3-208ENST00000566239 CEP164Q9UPV0 1460 aa24.92■■□□□ 1.58
HACD3-208ENST00000566239 CFTRP13569 1480 aa24.89■■□□□ 1.58
HACD3-208ENST00000566239 FANCD2Q9BXW9 1451 aa24.89■■□□□ 1.57
HACD3-208ENST00000566239 PRDM2Q13029 1718 aa24.88■■□□□ 1.57
HACD3-208ENST00000566239 CCDC88BA6NC98 1476 aa24.7■■□□□ 1.54
HACD3-208ENST00000566239 URB2Q14146 1524 aaKnown RBP24.66■■□□□ 1.54
HACD3-208ENST00000566239 ABCC8Q09428 1581 aa24.45■■□□□ 1.5
HACD3-208ENST00000566239 TOPBP1Q92547 1522 aa24.44■■□□□ 1.5
HACD3-208ENST00000566239 IFT140Q96RY7 1462 aa24.41■■□□□ 1.5
HACD3-208ENST00000566239 DNMBPQ6XZF7 1577 aa24.4■■□□□ 1.5
HACD3-208ENST00000566239 OSCARQ8IYS5 282 aa24.33■■□□□ 1.49
HACD3-208ENST00000566239 ZNF608Q9ULD9 1512 aaPredicted RBP24.3■■□□□ 1.48
HACD3-208ENST00000566239 EIF4G3O43432 1585 aaKnown RBP24.28■■□□□ 1.48
HACD3-208ENST00000566239 TARBP1Q13395 1621 aaKnown RBP24.24■■□□□ 1.47
HACD3-208ENST00000566239 TRIM41Q8WV44 630 aa24.23■■□□□ 1.47
HACD3-208ENST00000566239 POLA1P09884 1462 aaPredicted RBP24.18■■□□□ 1.46
HACD3-208ENST00000566239 CHD1O14646 1710 aa24.13■■□□□ 1.45
HACD3-208ENST00000566239 AQRO60306 1485 aaKnown RBP eCLIP24.1■■□□□ 1.451e-6■■■■□ 26.7
HACD3-208ENST00000566239 RIMBP3CA6NJZ7 1639 aa24.07■■□□□ 1.44
HACD3-208ENST00000566239 RIMBP3BA6NNM3 1639 aa24.07■■□□□ 1.44
HACD3-208ENST00000566239 RIMBP3Q9UFD9 1639 aa24.07■■□□□ 1.44
HACD3-208ENST00000566239 SUPT5HO00267 1087 aaKnown RBP24.07■■□□□ 1.44
HACD3-208ENST00000566239 SOGA1O94964 1423 aa24.07■■□□□ 1.44
HACD3-208ENST00000566239 FGD5Q6ZNL6 1462 aa24.07■■□□□ 1.44
HACD3-208ENST00000566239 RAD54L2Q9Y4B4 1467 aa24.07■■□□□ 1.44
HACD3-208ENST00000566239 WDR97A6NE52 1622 aa24.06■■□□□ 1.44
HACD3-208ENST00000566239 CUX1P39880 1505 aa24.05■■□□□ 1.44
HACD3-208ENST00000566239 ARHGEF11O15085 1522 aa23.97■■□□□ 1.43
HACD3-208ENST00000566239 TDRD9Q8NDG6 1382 aaKnown RBP23.97■■□□□ 1.43
HACD3-208ENST00000566239 FBLN2P98095 1184 aa23.93■■□□□ 1.42
HACD3-208ENST00000566239 PBRM1Q86U86 1689 aa23.9■■□□□ 1.42
HACD3-208ENST00000566239 SNAPC4Q5SXM2 1469 aa23.89■■□□□ 1.42
HACD3-208ENST00000566239 MAGI1Q96QZ7 1491 aaPredicted RBP23.87■■□□□ 1.41
HACD3-208ENST00000566239 GRIN2BQ13224 1484 aa23.87■■□□□ 1.41
HACD3-208ENST00000566239 SYNJ1O43426 1573 aa23.81■■□□□ 1.4
HACD3-208ENST00000566239 GAPVD1Q14C86 1478 aa23.8■■□□□ 1.4
HACD3-208ENST00000566239 ABCA10Q8WWZ4 1543 aa23.79■■□□□ 1.4
HACD3-208ENST00000566239 CHMP7Q8WUX9 453 aaPredicted RBP23.79■■□□□ 1.4
HACD3-208ENST00000566239 ABCA5Q8WWZ7 1642 aa23.79■■□□□ 1.4
HACD3-208ENST00000566239 BIVM-ERCC5R4GMW8 1640 aa23.79■■□□□ 1.4
HACD3-208ENST00000566239 SYNJ2O15056 1496 aa23.78■■□□□ 1.4
HACD3-208ENST00000566239 CLASP1Q7Z460 1538 aa23.76■■□□□ 1.39
HACD3-208ENST00000566239 TOP2BQ02880 1626 aa23.76■■□□□ 1.39
HACD3-208ENST00000566239 CYB5RLQ6IPT4 315 aa23.73■■□□□ 1.39
HACD3-208ENST00000566239 WRNQ14191 1432 aaPredicted RBP eCLIP23.72■■□□□ 1.39
HACD3-208ENST00000566239 ARAP1Q96P48 1450 aa23.71■■□□□ 1.39
HACD3-208ENST00000566239 ADAMTS12P58397 1594 aa23.6■■□□□ 1.37
HACD3-208ENST00000566239 GRIN2AQ12879 1464 aa23.56■■□□□ 1.36
HACD3-208ENST00000566239 ERICH3Q5RHP9 1530 aa23.54■■□□□ 1.36
HACD3-208ENST00000566239 FHAD1B1AJZ9 1412 aa23.5■■□□□ 1.35
HACD3-208ENST00000566239 CEP170Q5SW79 1584 aa23.48■■□□□ 1.35
HACD3-208ENST00000566239 TRHP20396 242 aaPredicted RBP23.46■■□□□ 1.35
HACD3-208ENST00000566239 NUP160Q12769 1436 aa23.45■■□□□ 1.34
HACD3-208ENST00000566239 SHROOM2Q13796 1616 aa23.41■■□□□ 1.34
HACD3-208ENST00000566239 ERCC6L2Q5T890 1561 aa23.36■■□□□ 1.33
HACD3-208ENST00000566239 CUL7Q14999 1698 aa23.28■■□□□ 1.32
HACD3-208ENST00000566239 RUSC2Q8N2Y8 1516 aa23.27■■□□□ 1.32
HACD3-208ENST00000566239 KIF27Q86VH2 1401 aa23.26■■□□□ 1.31
HACD3-208ENST00000566239 PRG4Q92954 1404 aaPredicted RBP23.22■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 8.3 ms