RNA–Protein interactions for RNA: ENST00000566095.6

SF3B3-207, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 3

Gene SF3B3, Length 453 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-207ENST00000566095 NISCHQ9Y2I1 1504 aa22.64■■□□□ 1.21
SF3B3-207ENST00000566095 CCDC180Q9P1Z9 1646 aa19.98■□□□□ 0.79
SF3B3-207ENST00000566095 ZCCHC6Q5VYS8 1495 aaKnown RBP18.97■□□□□ 0.63
SF3B3-207ENST00000566095 ABCC9O60706 1549 aa18.96■□□□□ 0.63
SF3B3-207ENST00000566095 DCAF1Q9Y4B6 1507 aa18.83■□□□□ 0.6
SF3B3-207ENST00000566095 MYO15BQ96JP2 1530 aa18.75■□□□□ 0.59
SF3B3-207ENST00000566095 DCAF8L2P0C7V8 631 aa18.72■□□□□ 0.59
SF3B3-207ENST00000566095 NACADO15069 1562 aa18.68■□□□□ 0.58
SF3B3-207ENST00000566095 RB1CC1Q8TDY2 1594 aa18.58■□□□□ 0.56
SF3B3-207ENST00000566095 SCRIBQ14160 1630 aa18.18■□□□□ 0.5
SF3B3-207ENST00000566095 SHROOM4Q9ULL8 1493 aa18.11■□□□□ 0.49
SF3B3-207ENST00000566095 UNC13AQ9UPW8 1703 aa17.99■□□□□ 0.47
SF3B3-207ENST00000566095 BICRAQ9NZM4 1560 aa17.83■□□□□ 0.44
SF3B3-207ENST00000566095 PABPN1Q86U42 306 aaKnown RBP eCLIP17.76■□□□□ 0.43
SF3B3-207ENST00000566095 BAZ1AQ9NRL2 1556 aaPredicted RBP17.58■□□□□ 0.41
SF3B3-207ENST00000566095 CECR2Q9BXF3 1484 aa17.48■□□□□ 0.39
SF3B3-207ENST00000566095 SMARCA4P51532 1647 aa17.46■□□□□ 0.39
SF3B3-207ENST00000566095 EIF4G1Q04637 1599 aaKnown RBP17.4■□□□□ 0.38
SF3B3-207ENST00000566095 RSF1Q96T23 1441 aaPredicted RBP17.4■□□□□ 0.38
SF3B3-207ENST00000566095 MROH2BQ7Z745 1585 aa17.39■□□□□ 0.37
SF3B3-207ENST00000566095 SUPT5HO00267 1087 aaKnown RBP17.36■□□□□ 0.37
SF3B3-207ENST00000566095 SMARCA2P51531 1590 aa17.34■□□□□ 0.37
SF3B3-207ENST00000566095 PEG3Q9GZU2 1588 aa17.31■□□□□ 0.36
SF3B3-207ENST00000566095 ATAD2BQ9ULI0 1458 aa17.24■□□□□ 0.35
SF3B3-207ENST00000566095 WIZO95785 1651 aa17.22■□□□□ 0.35
SF3B3-207ENST00000566095 CC2D2AQ9P2K1 1620 aa17.19■□□□□ 0.34
SF3B3-207ENST00000566095 BAZ1BQ9UIG0 1483 aaKnown RBP17.18■□□□□ 0.34
SF3B3-207ENST00000566095 NCAPD3P42695 1498 aa17.18■□□□□ 0.34
SF3B3-207ENST00000566095 TOP2AP11388 1531 aaKnown RBP17.17■□□□□ 0.34
SF3B3-207ENST00000566095 HMGXB3Q12766 1538 aa17.17■□□□□ 0.34
SF3B3-207ENST00000566095 CCDC88BA6NC98 1476 aa16.91■□□□□ 0.3
SF3B3-207ENST00000566095 DNAJC5BQ9UF47 199 aa16.8■□□□□ 0.28
SF3B3-207ENST00000566095 CADPSQ9ULU8 1353 aa16.71■□□□□ 0.27
SF3B3-207ENST00000566095 CFTRP13569 1480 aa16.7■□□□□ 0.26
SF3B3-207ENST00000566095 LAMC3Q9Y6N6 1575 aa16.69■□□□□ 0.26
SF3B3-207ENST00000566095 PRDM2Q13029 1718 aa16.65■□□□□ 0.26
SF3B3-207ENST00000566095 PDS5BQ9NTI5 1447 aa16.6■□□□□ 0.25
SF3B3-207ENST00000566095 FANCD2Q9BXW9 1451 aa16.52■□□□□ 0.23
SF3B3-207ENST00000566095 CEP164Q9UPV0 1460 aa16.49■□□□□ 0.23
SF3B3-207ENST00000566095 NESP48681 1621 aa16.49■□□□□ 0.23
SF3B3-207ENST00000566095 WRNQ14191 1432 aaPredicted RBP eCLIP16.47■□□□□ 0.23
SF3B3-207ENST00000566095 CHIC1Q5VXU3 224 aa16.47■□□□□ 0.23
SF3B3-207ENST00000566095 ABCC8Q09428 1581 aa16.46■□□□□ 0.23
SF3B3-207ENST00000566095 TRIM41Q8WV44 630 aa16.45■□□□□ 0.22
SF3B3-207ENST00000566095 ERCC6Q03468 1493 aa16.42■□□□□ 0.22
SF3B3-207ENST00000566095 TOP2BQ02880 1626 aa16.36■□□□□ 0.21
SF3B3-207ENST00000566095 KIF21AQ7Z4S6 1674 aa16.36■□□□□ 0.21
SF3B3-207ENST00000566095 DNMBPQ6XZF7 1577 aa16.35■□□□□ 0.21
SF3B3-207ENST00000566095 MRC2Q9UBG0 1479 aa16.35■□□□□ 0.21
SF3B3-207ENST00000566095 BIVM-ERCC5R4GMW8 1640 aa16.34■□□□□ 0.21
SF3B3-207ENST00000566095 SYNJ1O43426 1573 aa16.3■□□□□ 0.2
SF3B3-207ENST00000566095 CUX1P39880 1505 aa16.3■□□□□ 0.2
SF3B3-207ENST00000566095 TOPBP1Q92547 1522 aa16.29■□□□□ 0.2
SF3B3-207ENST00000566095 URB2Q14146 1524 aaKnown RBP16.25■□□□□ 0.19
SF3B3-207ENST00000566095 WDR62O43379 1518 aa16.24■□□□□ 0.19
SF3B3-207ENST00000566095 EEA1Q15075 1411 aa16.22■□□□□ 0.19
SF3B3-207ENST00000566095 FGD5Q6ZNL6 1462 aa16.21■□□□□ 0.19
SF3B3-207ENST00000566095 THOC2Q8NI27 1593 aaKnown RBP16.21■□□□□ 0.18
SF3B3-207ENST00000566095 POLA1P09884 1462 aaPredicted RBP16.17■□□□□ 0.18
SF3B3-207ENST00000566095 SOGA1O94964 1423 aa16.15■□□□□ 0.18
SF3B3-207ENST00000566095 IFT140Q96RY7 1462 aa16.14■□□□□ 0.17
SF3B3-207ENST00000566095 KIF27Q86VH2 1401 aa16.13■□□□□ 0.17
SF3B3-207ENST00000566095 ABCA10Q8WWZ4 1543 aa16.12■□□□□ 0.17
SF3B3-207ENST00000566095 WDR97A6NE52 1622 aa16.11■□□□□ 0.17
SF3B3-207ENST00000566095 CUX2O14529 1486 aa16.08■□□□□ 0.16
SF3B3-207ENST00000566095 RAD54L2Q9Y4B4 1467 aa16.04■□□□□ 0.16
SF3B3-207ENST00000566095 TARBP1Q13395 1621 aaKnown RBP16.03■□□□□ 0.16
SF3B3-207ENST00000566095 CSRNP3Q8WYN3 585 aa16.02■□□□□ 0.16
SF3B3-207ENST00000566095 GAPVD1Q14C86 1478 aa15.98■□□□□ 0.15
SF3B3-207ENST00000566095 FAM9AQ8IZU1 332 aaPredicted RBP15.98■□□□□ 0.15
SF3B3-207ENST00000566095 DNAJC5Q9H3Z4 198 aa15.98■□□□□ 0.15
SF3B3-207ENST00000566095 ERICH3Q5RHP9 1530 aa15.97■□□□□ 0.15
SF3B3-207ENST00000566095 ABCA5Q8WWZ7 1642 aa15.97■□□□□ 0.15
SF3B3-207ENST00000566095 TDRD9Q8NDG6 1382 aaKnown RBP15.94■□□□□ 0.14
SF3B3-207ENST00000566095 GRIN2BQ13224 1484 aa15.94■□□□□ 0.14
SF3B3-207ENST00000566095 CUL7Q14999 1698 aa15.94■□□□□ 0.14
SF3B3-207ENST00000566095 RUSC2Q8N2Y8 1516 aa15.92■□□□□ 0.14
SF3B3-207ENST00000566095 KIF21BO75037 1637 aa15.91■□□□□ 0.14
SF3B3-207ENST00000566095 IGF1RP08069 1367 aa15.9■□□□□ 0.14
SF3B3-207ENST00000566095 EIF4G3O43432 1585 aaKnown RBP15.9■□□□□ 0.14
SF3B3-207ENST00000566095 GOLGA3Q08378 1498 aa15.9■□□□□ 0.14
SF3B3-207ENST00000566095 PBRM1Q86U86 1689 aa15.89■□□□□ 0.13
SF3B3-207ENST00000566095 CARMIL1Q5VZK9 1371 aa15.87■□□□□ 0.13
SF3B3-207ENST00000566095 AQRO60306 1485 aaKnown RBP eCLIP15.87■□□□□ 0.131e-8■■■■■ 36.6
SF3B3-207ENST00000566095 PRXQ9BXM0 1461 aa15.87■□□□□ 0.13
SF3B3-207ENST00000566095 ZNF608Q9ULD9 1512 aaPredicted RBP15.87■□□□□ 0.13
SF3B3-207ENST00000566095 MAGI1Q96QZ7 1491 aaPredicted RBP15.86■□□□□ 0.13
SF3B3-207ENST00000566095 RAPGEF2Q9Y4G8 1499 aa15.85■□□□□ 0.13
SF3B3-207ENST00000566095 FHAD1B1AJZ9 1412 aa15.85■□□□□ 0.13
SF3B3-207ENST00000566095 ADAMTS12P58397 1594 aa15.79■□□□□ 0.12
SF3B3-207ENST00000566095 SNAPC4Q5SXM2 1469 aa15.79■□□□□ 0.12
SF3B3-207ENST00000566095 UBTFP17480 764 aaKnown RBP15.79■□□□□ 0.12
SF3B3-207ENST00000566095 TNIKQ9UKE5 1360 aa15.77■□□□□ 0.12
SF3B3-207ENST00000566095 SYNJ2O15056 1496 aa15.77■□□□□ 0.11
SF3B3-207ENST00000566095 CHMP7Q8WUX9 453 aaPredicted RBP15.74■□□□□ 0.11
SF3B3-207ENST00000566095 LOC105371045A0A1W2PR82 267 aa15.72■□□□□ 0.11
SF3B3-207ENST00000566095 GRIN2AQ12879 1464 aa15.7■□□□□ 0.1
SF3B3-207ENST00000566095 EHMT2Q96KQ7 1210 aa15.69■□□□□ 0.1
SF3B3-207ENST00000566095 FBLN2P98095 1184 aa15.67■□□□□ 0.1
SF3B3-207ENST00000566095 CTTNBP2Q8WZ74 1663 aa15.66■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 8.1 ms