RNA–Protein interactions for RNA: ENST00000566016.5

SHCBP1-205, Transcript of SHC binding and spindle associated 1, humanhuman

TSL 1 (best)

Gene SHCBP1, Length 1,482 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHCBP1-205ENST00000566016 NISCHQ9Y2I1 1504 aa51.04■■■■■ 5.76
SHCBP1-205ENST00000566016 CCDC180Q9P1Z9 1646 aa45.41■■■■■ 4.86
SHCBP1-205ENST00000566016 ABCC9O60706 1549 aa44.01■■■■■ 4.64
SHCBP1-205ENST00000566016 ZCCHC6Q5VYS8 1495 aaKnown RBP42.59■■■■■ 4.41
SHCBP1-205ENST00000566016 NACADO15069 1562 aa42.58■■■■■ 4.41
SHCBP1-205ENST00000566016 RB1CC1Q8TDY2 1594 aa42.56■■■■■ 4.4
SHCBP1-205ENST00000566016 MYO15BQ96JP2 1530 aa42.47■■■■■ 4.39
SHCBP1-205ENST00000566016 DCAF1Q9Y4B6 1507 aa42.34■■■■■ 4.37
SHCBP1-205ENST00000566016 DCAF8L2P0C7V8 631 aa42.28■■■■■ 4.36
SHCBP1-205ENST00000566016 UNC13AQ9UPW8 1703 aa41.66■■■■■ 4.26
SHCBP1-205ENST00000566016 SCRIBQ14160 1630 aa41.29■■■■■ 4.2
SHCBP1-205ENST00000566016 BICRAQ9NZM4 1560 aa41.25■■■■■ 4.19
SHCBP1-205ENST00000566016 PABPN1Q86U42 306 aaKnown RBP eCLIP41.06■■■■■ 4.16
SHCBP1-205ENST00000566016 SHROOM4Q9ULL8 1493 aa40.96■■■■■ 4.15
SHCBP1-205ENST00000566016 EIF4G1Q04637 1599 aaKnown RBP40.14■■■■■ 4.02
SHCBP1-205ENST00000566016 DNAJC5BQ9UF47 199 aa40.13■■■■■ 4.01
SHCBP1-205ENST00000566016 CC2D2AQ9P2K1 1620 aa39.91■■■■□ 3.98
SHCBP1-205ENST00000566016 CECR2Q9BXF3 1484 aa39.65■■■■□ 3.94
SHCBP1-205ENST00000566016 SMARCA4P51532 1647 aa39.59■■■■□ 3.93
SHCBP1-205ENST00000566016 BAZ1AQ9NRL2 1556 aaPredicted RBP39.58■■■■□ 3.93
SHCBP1-205ENST00000566016 SMARCA2P51531 1590 aa39.3■■■■□ 3.88
SHCBP1-205ENST00000566016 MROH2BQ7Z745 1585 aa39.29■■■■□ 3.88
SHCBP1-205ENST00000566016 ATAD2BQ9ULI0 1458 aa39.27■■■■□ 3.88
SHCBP1-205ENST00000566016 PEG3Q9GZU2 1588 aa39.26■■■■□ 3.88
SHCBP1-205ENST00000566016 NCAPD3P42695 1498 aa39.24■■■■□ 3.87
SHCBP1-205ENST00000566016 HMGXB3Q12766 1538 aa39.13■■■■□ 3.86
SHCBP1-205ENST00000566016 BAZ1BQ9UIG0 1483 aaKnown RBP38.96■■■■□ 3.83
SHCBP1-205ENST00000566016 RSF1Q96T23 1441 aaPredicted RBP38.91■■■■□ 3.82
SHCBP1-205ENST00000566016 WIZO95785 1651 aa38.89■■■■□ 3.82
SHCBP1-205ENST00000566016 TOP2AP11388 1531 aaKnown RBP38.54■■■■□ 3.76
SHCBP1-205ENST00000566016 LAMC3Q9Y6N6 1575 aa38.23■■■■□ 3.71
SHCBP1-205ENST00000566016 NESP48681 1621 aa38.15■■■■□ 3.7
SHCBP1-205ENST00000566016 CADPSQ9ULU8 1353 aa38.07■■■■□ 3.68
SHCBP1-205ENST00000566016 CCDC88BA6NC98 1476 aa38■■■■□ 3.67
SHCBP1-205ENST00000566016 ERCC6Q03468 1493 aa37.94■■■■□ 3.66
SHCBP1-205ENST00000566016 CFTRP13569 1480 aa37.93■■■■□ 3.66
SHCBP1-205ENST00000566016 SUPT5HO00267 1087 aaKnown RBP37.9■■■■□ 3.66
SHCBP1-205ENST00000566016 PDS5BQ9NTI5 1447 aa37.89■■■■□ 3.66
SHCBP1-205ENST00000566016 KIF21AQ7Z4S6 1674 aa37.81■■■■□ 3.64
SHCBP1-205ENST00000566016 PRDM2Q13029 1718 aa37.8■■■■□ 3.64
SHCBP1-205ENST00000566016 THOC2Q8NI27 1593 aaKnown RBP37.65■■■■□ 3.62
SHCBP1-205ENST00000566016 FANCD2Q9BXW9 1451 aa37.64■■■■□ 3.62
SHCBP1-205ENST00000566016 CEP164Q9UPV0 1460 aa37.59■■■■□ 3.61
SHCBP1-205ENST00000566016 CUX2O14529 1486 aa37.56■■■■□ 3.6
SHCBP1-205ENST00000566016 MRC2Q9UBG0 1479 aa37.49■■■■□ 3.59
SHCBP1-205ENST00000566016 WDR62O43379 1518 aa37.41■■■■□ 3.58
SHCBP1-205ENST00000566016 URB2Q14146 1524 aaKnown RBP37.26■■■■□ 3.55
SHCBP1-205ENST00000566016 ABCC8Q09428 1581 aa37.14■■■■□ 3.54
SHCBP1-205ENST00000566016 DNMBPQ6XZF7 1577 aa37.09■■■■□ 3.53
SHCBP1-205ENST00000566016 TOPBP1Q92547 1522 aa37.07■■■■□ 3.53
SHCBP1-205ENST00000566016 CUX1P39880 1505 aa36.87■■■■□ 3.49
SHCBP1-205ENST00000566016 IFT140Q96RY7 1462 aa36.8■■■■□ 3.48
SHCBP1-205ENST00000566016 POLA1P09884 1462 aaPredicted RBP36.78■■■■□ 3.48
SHCBP1-205ENST00000566016 TARBP1Q13395 1621 aaKnown RBP36.71■■■■□ 3.47
SHCBP1-205ENST00000566016 FGD5Q6ZNL6 1462 aa36.69■■■■□ 3.46
SHCBP1-205ENST00000566016 WRNQ14191 1432 aaPredicted RBP eCLIP36.69■■■■□ 3.46
SHCBP1-205ENST00000566016 BIVM-ERCC5R4GMW8 1640 aa36.69■■■■□ 3.46
SHCBP1-205ENST00000566016 TOP2BQ02880 1626 aa36.66■■■■□ 3.46
SHCBP1-205ENST00000566016 SYNJ1O43426 1573 aa36.61■■■■□ 3.45
SHCBP1-205ENST00000566016 SOGA1O94964 1423 aa36.57■■■■□ 3.44
SHCBP1-205ENST00000566016 ZNF608Q9ULD9 1512 aaPredicted RBP36.56■■■■□ 3.44
SHCBP1-205ENST00000566016 RAD54L2Q9Y4B4 1467 aa36.53■■■■□ 3.44
SHCBP1-205ENST00000566016 WDR97A6NE52 1622 aa36.52■■■■□ 3.44
SHCBP1-205ENST00000566016 EIF4G3O43432 1585 aaKnown RBP36.52■■■■□ 3.44
SHCBP1-205ENST00000566016 ABCA10Q8WWZ4 1543 aa36.4■■■■□ 3.42
SHCBP1-205ENST00000566016 AQRO60306 1485 aaKnown RBP eCLIP36.34■■■■□ 3.412e-7■■■■■ 33.5
SHCBP1-205ENST00000566016 TDRD9Q8NDG6 1382 aaKnown RBP36.29■■■■□ 3.4
SHCBP1-205ENST00000566016 ABCA5Q8WWZ7 1642 aa36.28■■■■□ 3.4
SHCBP1-205ENST00000566016 GAPVD1Q14C86 1478 aa36.19■■■■□ 3.38
SHCBP1-205ENST00000566016 PBRM1Q86U86 1689 aa36.19■■■■□ 3.38
SHCBP1-205ENST00000566016 GRIN2BQ13224 1484 aa36.18■■■■□ 3.38
SHCBP1-205ENST00000566016 MAGI1Q96QZ7 1491 aaPredicted RBP36.1■■■■□ 3.37
SHCBP1-205ENST00000566016 SNAPC4Q5SXM2 1469 aa36.07■■■■□ 3.37
SHCBP1-205ENST00000566016 DNAJC5Q9H3Z4 198 aa36.05■■■■□ 3.36
SHCBP1-205ENST00000566016 CHD1O14646 1710 aa36.03■■■■□ 3.36
SHCBP1-205ENST00000566016 ERICH3Q5RHP9 1530 aa36■■■■□ 3.35
SHCBP1-205ENST00000566016 SYNJ2O15056 1496 aa35.93■■■■□ 3.34
SHCBP1-205ENST00000566016 KIF27Q86VH2 1401 aa35.92■■■■□ 3.34
SHCBP1-205ENST00000566016 OSCARQ8IYS5 282 aa35.92■■■■□ 3.34
SHCBP1-205ENST00000566016 ADAMTS12P58397 1594 aa35.9■■■■□ 3.34
SHCBP1-205ENST00000566016 TRIM41Q8WV44 630 aa35.85■■■■□ 3.33
SHCBP1-205ENST00000566016 FHAD1B1AJZ9 1412 aa35.79■■■■□ 3.32
SHCBP1-205ENST00000566016 FBLN2P98095 1184 aa35.78■■■■□ 3.32
SHCBP1-205ENST00000566016 CHMP7Q8WUX9 453 aaPredicted RBP35.78■■■■□ 3.32
SHCBP1-205ENST00000566016 CUL7Q14999 1698 aa35.74■■■■□ 3.31
SHCBP1-205ENST00000566016 GRIN2AQ12879 1464 aa35.72■■■■□ 3.31
SHCBP1-205ENST00000566016 IGF1RP08069 1367 aa35.69■■■■□ 3.3
SHCBP1-205ENST00000566016 CLASP1Q7Z460 1538 aa35.64■■■■□ 3.3
SHCBP1-205ENST00000566016 NUP160Q12769 1436 aa35.57■■■■□ 3.28
SHCBP1-205ENST00000566016 RUSC2Q8N2Y8 1516 aa35.56■■■■□ 3.28
SHCBP1-205ENST00000566016 CHIC1Q5VXU3 224 aa35.54■■■■□ 3.28
SHCBP1-205ENST00000566016 CEP170Q5SW79 1584 aa35.53■■■■□ 3.28
SHCBP1-205ENST00000566016 CARMIL1Q5VZK9 1371 aa35.49■■■■□ 3.27
SHCBP1-205ENST00000566016 ARHGEF11O15085 1522 aa35.42■■■■□ 3.26
SHCBP1-205ENST00000566016 EEA1Q15075 1411 aa35.41■■■■□ 3.26
SHCBP1-205ENST00000566016 RIMBP3CA6NJZ7 1639 aa35.41■■■■□ 3.26
SHCBP1-205ENST00000566016 RIMBP3BA6NNM3 1639 aa35.41■■■■□ 3.26
SHCBP1-205ENST00000566016 RIMBP3Q9UFD9 1639 aa35.41■■■■□ 3.26
SHCBP1-205ENST00000566016 RAPGEF2Q9Y4G8 1499 aa35.35■■■■□ 3.25
SHCBP1-205ENST00000566016 SHROOM2Q13796 1616 aa35.34■■■■□ 3.25
Retrieved 100 of 20,778 RNA–protein pairs in 75.3 ms