RNA–Protein interactions for RNA: ENST00000565995.5

RNF40-208, Transcript of ring finger protein 40, humanhuman

TSL 4

Gene RNF40, Length 586 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40-208ENST00000565995 NISCHQ9Y2I1 1504 aa32.69■■■□□ 2.82
RNF40-208ENST00000565995 ABCC9O60706 1549 aa29.63■■■□□ 2.33
RNF40-208ENST00000565995 CCDC180Q9P1Z9 1646 aa29.6■■■□□ 2.33
RNF40-208ENST00000565995 RB1CC1Q8TDY2 1594 aa28.21■■■□□ 2.11
RNF40-208ENST00000565995 DNAJC5BQ9UF47 199 aa28.09■■■□□ 2.09
RNF40-208ENST00000565995 NACADO15069 1562 aa27.98■■■□□ 2.07
RNF40-208ENST00000565995 UNC13AQ9UPW8 1703 aa27.75■■■□□ 2.03
RNF40-208ENST00000565995 MYO15BQ96JP2 1530 aa27.55■■■□□ 2
RNF40-208ENST00000565995 DCAF8L2P0C7V8 631 aa27.47■■□□□ 1.99
RNF40-208ENST00000565995 PABPN1Q86U42 306 aaKnown RBP eCLIP27.47■■□□□ 1.99
RNF40-208ENST00000565995 BICRAQ9NZM4 1560 aa27.43■■□□□ 1.98
RNF40-208ENST00000565995 DCAF1Q9Y4B6 1507 aa27.07■■□□□ 1.92
RNF40-208ENST00000565995 SHROOM4Q9ULL8 1493 aa27.06■■□□□ 1.92
RNF40-208ENST00000565995 ZCCHC6Q5VYS8 1495 aaKnown RBP27.01■■□□□ 1.91
RNF40-208ENST00000565995 CC2D2AQ9P2K1 1620 aa26.87■■□□□ 1.89
RNF40-208ENST00000565995 CECR2Q9BXF3 1484 aa26.76■■□□□ 1.87
RNF40-208ENST00000565995 SCRIBQ14160 1630 aa26.76■■□□□ 1.87
RNF40-208ENST00000565995 EIF4G1Q04637 1599 aaKnown RBP26.74■■□□□ 1.87
RNF40-208ENST00000565995 DNAJC5Q9H3Z4 198 aa26.05■■□□□ 1.76
RNF40-208ENST00000565995 NCAPD3P42695 1498 aa25.79■■□□□ 1.72
RNF40-208ENST00000565995 CUX2O14529 1486 aa25.76■■□□□ 1.71
RNF40-208ENST00000565995 ATAD2BQ9ULI0 1458 aa25.64■■□□□ 1.69
RNF40-208ENST00000565995 HMGXB3Q12766 1538 aa25.6■■□□□ 1.69
RNF40-208ENST00000565995 SMARCA2P51531 1590 aa25.59■■□□□ 1.69
RNF40-208ENST00000565995 ERCC6Q03468 1493 aa25.59■■□□□ 1.69
RNF40-208ENST00000565995 SMARCA4P51532 1647 aa25.59■■□□□ 1.69
RNF40-208ENST00000565995 PEG3Q9GZU2 1588 aa25.41■■□□□ 1.66
RNF40-208ENST00000565995 NESP48681 1621 aa25.41■■□□□ 1.66
RNF40-208ENST00000565995 BAZ1AQ9NRL2 1556 aaPredicted RBP25.39■■□□□ 1.66
RNF40-208ENST00000565995 BAZ1BQ9UIG0 1483 aaKnown RBP25.34■■□□□ 1.65
RNF40-208ENST00000565995 THOC2Q8NI27 1593 aaKnown RBP25.31■■□□□ 1.64
RNF40-208ENST00000565995 LAMC3Q9Y6N6 1575 aa25.3■■□□□ 1.64
RNF40-208ENST00000565995 KIF21AQ7Z4S6 1674 aa25.21■■□□□ 1.63
RNF40-208ENST00000565995 MROH2BQ7Z745 1585 aa25.14■■□□□ 1.62
RNF40-208ENST00000565995 PDS5BQ9NTI5 1447 aa25.07■■□□□ 1.6
RNF40-208ENST00000565995 CADPSQ9ULU8 1353 aa24.94■■□□□ 1.58
RNF40-208ENST00000565995 WIZO95785 1651 aa24.88■■□□□ 1.57
RNF40-208ENST00000565995 WDR62O43379 1518 aa24.87■■□□□ 1.57
RNF40-208ENST00000565995 MRC2Q9UBG0 1479 aa24.87■■□□□ 1.57
RNF40-208ENST00000565995 CEP164Q9UPV0 1460 aa24.7■■□□□ 1.54
RNF40-208ENST00000565995 FANCD2Q9BXW9 1451 aa24.64■■□□□ 1.54
RNF40-208ENST00000565995 CFTRP13569 1480 aa24.64■■□□□ 1.53
RNF40-208ENST00000565995 TRIM41Q8WV44 630 aa24.61■■□□□ 1.53
RNF40-208ENST00000565995 PRDM2Q13029 1718 aa24.58■■□□□ 1.53
RNF40-208ENST00000565995 TOP2AP11388 1531 aaKnown RBP24.52■■□□□ 1.52
RNF40-208ENST00000565995 RSF1Q96T23 1441 aaPredicted RBP24.51■■□□□ 1.51
RNF40-208ENST00000565995 URB2Q14146 1524 aaKnown RBP24.48■■□□□ 1.51
RNF40-208ENST00000565995 OSCARQ8IYS5 282 aa24.46■■□□□ 1.51
RNF40-208ENST00000565995 RIMBP3CA6NJZ7 1639 aa24.27■■□□□ 1.48
RNF40-208ENST00000565995 RIMBP3BA6NNM3 1639 aa24.27■■□□□ 1.48
RNF40-208ENST00000565995 RIMBP3Q9UFD9 1639 aa24.27■■□□□ 1.48
RNF40-208ENST00000565995 IFT140Q96RY7 1462 aa24.24■■□□□ 1.47
RNF40-208ENST00000565995 CCDC88BA6NC98 1476 aa24.22■■□□□ 1.47
RNF40-208ENST00000565995 ZNF608Q9ULD9 1512 aaPredicted RBP24.2■■□□□ 1.46
RNF40-208ENST00000565995 TOPBP1Q92547 1522 aa24.18■■□□□ 1.46
RNF40-208ENST00000565995 ABCC8Q09428 1581 aa24.16■■□□□ 1.46
RNF40-208ENST00000565995 EIF4G3O43432 1585 aaKnown RBP24.12■■□□□ 1.45
RNF40-208ENST00000565995 ARHGEF11O15085 1522 aa24.11■■□□□ 1.45
RNF40-208ENST00000565995 DNMBPQ6XZF7 1577 aa24.09■■□□□ 1.45
RNF40-208ENST00000565995 TARBP1Q13395 1621 aaKnown RBP24.07■■□□□ 1.44
RNF40-208ENST00000565995 CHD1O14646 1710 aa24.07■■□□□ 1.44
RNF40-208ENST00000565995 AQRO60306 1485 aaKnown RBP eCLIP23.93■■□□□ 1.423e-7■■■■■ 29.3
RNF40-208ENST00000565995 POLA1P09884 1462 aaPredicted RBP23.89■■□□□ 1.42
RNF40-208ENST00000565995 CYB5RLQ6IPT4 315 aa23.85■■□□□ 1.41
RNF40-208ENST00000565995 WDR97A6NE52 1622 aa23.84■■□□□ 1.41
RNF40-208ENST00000565995 ARAP1Q96P48 1450 aa23.83■■□□□ 1.41
RNF40-208ENST00000565995 RAD54L2Q9Y4B4 1467 aa23.77■■□□□ 1.4
RNF40-208ENST00000565995 SOGA1O94964 1423 aa23.76■■□□□ 1.39
RNF40-208ENST00000565995 CLASP1Q7Z460 1538 aa23.73■■□□□ 1.39
RNF40-208ENST00000565995 FBLN2P98095 1184 aa23.72■■□□□ 1.39
RNF40-208ENST00000565995 TDRD9Q8NDG6 1382 aaKnown RBP23.7■■□□□ 1.38
RNF40-208ENST00000565995 FGD5Q6ZNL6 1462 aa23.68■■□□□ 1.38
RNF40-208ENST00000565995 SNAPC4Q5SXM2 1469 aa23.67■■□□□ 1.38
RNF40-208ENST00000565995 MAGI1Q96QZ7 1491 aaPredicted RBP23.67■■□□□ 1.38
RNF40-208ENST00000565995 SYNJ1O43426 1573 aa23.66■■□□□ 1.38
RNF40-208ENST00000565995 CUX1P39880 1505 aa23.65■■□□□ 1.38
RNF40-208ENST00000565995 TRHP20396 242 aaPredicted RBP23.63■■□□□ 1.37
RNF40-208ENST00000565995 PBRM1Q86U86 1689 aa23.62■■□□□ 1.37
RNF40-208ENST00000565995 GRIN2BQ13224 1484 aa23.6■■□□□ 1.37
RNF40-208ENST00000565995 SYNJ2O15056 1496 aa23.57■■□□□ 1.36
RNF40-208ENST00000565995 CHMP7Q8WUX9 453 aaPredicted RBP23.56■■□□□ 1.36
RNF40-208ENST00000565995 ABCA5Q8WWZ7 1642 aa23.48■■□□□ 1.35
RNF40-208ENST00000565995 GAPVD1Q14C86 1478 aa23.48■■□□□ 1.35
RNF40-208ENST00000565995 ABCA10Q8WWZ4 1543 aa23.45■■□□□ 1.34
RNF40-208ENST00000565995 GRIN2AQ12879 1464 aa23.3■■□□□ 1.32
RNF40-208ENST00000565995 SHROOM2Q13796 1616 aa23.3■■□□□ 1.32
RNF40-208ENST00000565995 BIVM-ERCC5R4GMW8 1640 aa23.3■■□□□ 1.32
RNF40-208ENST00000565995 ADAMTS12P58397 1594 aa23.28■■□□□ 1.32
RNF40-208ENST00000565995 ERCC6L2Q5T890 1561 aa23.28■■□□□ 1.32
RNF40-208ENST00000565995 CEP170Q5SW79 1584 aa23.27■■□□□ 1.32
RNF40-208ENST00000565995 NUP160Q12769 1436 aa23.26■■□□□ 1.31
RNF40-208ENST00000565995 TOP2BQ02880 1626 aa23.25■■□□□ 1.31
RNF40-208ENST00000565995 WRNQ14191 1432 aaPredicted RBP eCLIP23.24■■□□□ 1.31
RNF40-208ENST00000565995 KIF13AQ9H1H9 1805 aa23.2■■□□□ 1.3
RNF40-208ENST00000565995 ERICH3Q5RHP9 1530 aa23.18■■□□□ 1.3
RNF40-208ENST00000565995 FHAD1B1AJZ9 1412 aa23.16■■□□□ 1.3
RNF40-208ENST00000565995 AEBP2Q6ZN18 517 aaPredicted RBP23.16■■□□□ 1.3
RNF40-208ENST00000565995 SUPT5HO00267 1087 aaKnown RBP23.03■■□□□ 1.28
RNF40-208ENST00000565995 PRG4Q92954 1404 aaPredicted RBP22.99■■□□□ 1.27
RNF40-208ENST00000565995 RUSC2Q8N2Y8 1516 aa22.98■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms