RNA–Protein interactions for RNA: ENST00000565545.1

CSPG4P13-201, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 13, humanhuman

TSL 5

Gene CSPG4P13, Length 657 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P13-201ENST00000565545 NISCHQ9Y2I1 1504 aa43.94■■■■■ 4.63
CSPG4P13-201ENST00000565545 ABCC9O60706 1549 aa39.64■■■■□ 3.94
CSPG4P13-201ENST00000565545 CCDC180Q9P1Z9 1646 aa39.18■■■■□ 3.86
CSPG4P13-201ENST00000565545 RB1CC1Q8TDY2 1594 aa37.53■■■■□ 3.6
CSPG4P13-201ENST00000565545 DNAJC5BQ9UF47 199 aa37.46■■■■□ 3.59
CSPG4P13-201ENST00000565545 DCAF8L2P0C7V8 631 aa37.28■■■■□ 3.56
CSPG4P13-201ENST00000565545 NACADO15069 1562 aa37.21■■■■□ 3.55
CSPG4P13-201ENST00000565545 PABPN1Q86U42 306 aaKnown RBP eCLIP36.98■■■■□ 3.51
CSPG4P13-201ENST00000565545 ZCCHC6Q5VYS8 1495 aaKnown RBP36.85■■■■□ 3.49
CSPG4P13-201ENST00000565545 MYO15BQ96JP2 1530 aa36.55■■■■□ 3.44
CSPG4P13-201ENST00000565545 UNC13AQ9UPW8 1703 aa36.5■■■■□ 3.43
CSPG4P13-201ENST00000565545 DCAF1Q9Y4B6 1507 aa36.46■■■■□ 3.43
CSPG4P13-201ENST00000565545 BICRAQ9NZM4 1560 aa36.38■■■■□ 3.41
CSPG4P13-201ENST00000565545 SHROOM4Q9ULL8 1493 aa35.88■■■■□ 3.33
CSPG4P13-201ENST00000565545 SCRIBQ14160 1630 aa35.79■■■■□ 3.32
CSPG4P13-201ENST00000565545 CECR2Q9BXF3 1484 aa35.73■■■■□ 3.31
CSPG4P13-201ENST00000565545 CC2D2AQ9P2K1 1620 aa35.7■■■■□ 3.31
CSPG4P13-201ENST00000565545 EIF4G1Q04637 1599 aaKnown RBP35.56■■■■□ 3.28
CSPG4P13-201ENST00000565545 DNAJC5Q9H3Z4 198 aa34.62■■■■□ 3.13
CSPG4P13-201ENST00000565545 NCAPD3P42695 1498 aa34.39■■■■□ 3.1
CSPG4P13-201ENST00000565545 ERCC6Q03468 1493 aa34.28■■■■□ 3.08
CSPG4P13-201ENST00000565545 ATAD2BQ9ULI0 1458 aa34.25■■■■□ 3.07
CSPG4P13-201ENST00000565545 CUX2O14529 1486 aa34.21■■■■□ 3.07
CSPG4P13-201ENST00000565545 SMARCA2P51531 1590 aa34.11■■■■□ 3.05
CSPG4P13-201ENST00000565545 SMARCA4P51532 1647 aa34.08■■■■□ 3.05
CSPG4P13-201ENST00000565545 HMGXB3Q12766 1538 aa34.03■■■■□ 3.04
CSPG4P13-201ENST00000565545 BAZ1AQ9NRL2 1556 aaPredicted RBP34■■■■□ 3.03
CSPG4P13-201ENST00000565545 NESP48681 1621 aa33.94■■■■□ 3.02
CSPG4P13-201ENST00000565545 BAZ1BQ9UIG0 1483 aaKnown RBP33.93■■■■□ 3.02
CSPG4P13-201ENST00000565545 RSF1Q96T23 1441 aaPredicted RBP33.91■■■■□ 3.02
CSPG4P13-201ENST00000565545 SUPT5HO00267 1087 aaKnown RBP33.9■■■■□ 3.02
CSPG4P13-201ENST00000565545 MROH2BQ7Z745 1585 aa33.86■■■■□ 3.01
CSPG4P13-201ENST00000565545 PEG3Q9GZU2 1588 aa33.7■■■□□ 2.99
CSPG4P13-201ENST00000565545 LAMC3Q9Y6N6 1575 aa33.6■■■□□ 2.97
CSPG4P13-201ENST00000565545 WIZO95785 1651 aa33.57■■■□□ 2.96
CSPG4P13-201ENST00000565545 PDS5BQ9NTI5 1447 aa33.54■■■□□ 2.96
CSPG4P13-201ENST00000565545 THOC2Q8NI27 1593 aaKnown RBP33.52■■■□□ 2.96
CSPG4P13-201ENST00000565545 CADPSQ9ULU8 1353 aa33.39■■■□□ 2.94
CSPG4P13-201ENST00000565545 KIF21AQ7Z4S6 1674 aa33.36■■■□□ 2.93
CSPG4P13-201ENST00000565545 TOP2AP11388 1531 aaKnown RBP33.3■■■□□ 2.92
CSPG4P13-201ENST00000565545 MRC2Q9UBG0 1479 aa33.21■■■□□ 2.91
CSPG4P13-201ENST00000565545 TRIM41Q8WV44 630 aa33.09■■■□□ 2.89
CSPG4P13-201ENST00000565545 WDR62O43379 1518 aa33.07■■■□□ 2.88
CSPG4P13-201ENST00000565545 CEP164Q9UPV0 1460 aa33.03■■■□□ 2.88
CSPG4P13-201ENST00000565545 FANCD2Q9BXW9 1451 aa32.98■■■□□ 2.87
CSPG4P13-201ENST00000565545 CCDC88BA6NC98 1476 aa32.89■■■□□ 2.86
CSPG4P13-201ENST00000565545 CFTRP13569 1480 aa32.89■■■□□ 2.86
CSPG4P13-201ENST00000565545 OSCARQ8IYS5 282 aa32.78■■■□□ 2.84
CSPG4P13-201ENST00000565545 URB2Q14146 1524 aaKnown RBP32.68■■■□□ 2.82
CSPG4P13-201ENST00000565545 IFT140Q96RY7 1462 aa32.39■■■□□ 2.78
CSPG4P13-201ENST00000565545 ZNF608Q9ULD9 1512 aaPredicted RBP32.36■■■□□ 2.77
CSPG4P13-201ENST00000565545 CHIC1Q5VXU3 224 aa32.35■■■□□ 2.77
CSPG4P13-201ENST00000565545 PRDM2Q13029 1718 aa32.33■■■□□ 2.77
CSPG4P13-201ENST00000565545 TOPBP1Q92547 1522 aa32.3■■■□□ 2.76
CSPG4P13-201ENST00000565545 ABCC8Q09428 1581 aa32.24■■■□□ 2.75
CSPG4P13-201ENST00000565545 RIMBP3CA6NJZ7 1639 aa32.17■■■□□ 2.74
CSPG4P13-201ENST00000565545 RIMBP3BA6NNM3 1639 aa32.17■■■□□ 2.74
CSPG4P13-201ENST00000565545 RIMBP3Q9UFD9 1639 aa32.17■■■□□ 2.74
CSPG4P13-201ENST00000565545 DNMBPQ6XZF7 1577 aa32.12■■■□□ 2.73
CSPG4P13-201ENST00000565545 ARHGEF11O15085 1522 aa32.09■■■□□ 2.73
CSPG4P13-201ENST00000565545 AQRO60306 1485 aaKnown RBP eCLIP32.08■■■□□ 2.73
CSPG4P13-201ENST00000565545 EIF4G3O43432 1585 aaKnown RBP32.07■■■□□ 2.72
CSPG4P13-201ENST00000565545 FBLN2P98095 1184 aa32.07■■■□□ 2.72
CSPG4P13-201ENST00000565545 CYB5RLQ6IPT4 315 aa32.05■■■□□ 2.72
CSPG4P13-201ENST00000565545 WRNQ14191 1432 aaPredicted RBP eCLIP31.95■■■□□ 2.71
CSPG4P13-201ENST00000565545 TARBP1Q13395 1621 aaKnown RBP31.95■■■□□ 2.71
CSPG4P13-201ENST00000565545 POLA1P09884 1462 aaPredicted RBP31.95■■■□□ 2.7
CSPG4P13-201ENST00000565545 SOGA1O94964 1423 aa31.89■■■□□ 2.7
CSPG4P13-201ENST00000565545 RAD54L2Q9Y4B4 1467 aa31.89■■■□□ 2.7
CSPG4P13-201ENST00000565545 TDRD9Q8NDG6 1382 aaKnown RBP31.88■■■□□ 2.69
CSPG4P13-201ENST00000565545 CHD1O14646 1710 aa31.85■■■□□ 2.69
CSPG4P13-201ENST00000565545 TRHP20396 242 aaPredicted RBP31.83■■■□□ 2.69
CSPG4P13-201ENST00000565545 SYNJ1O43426 1573 aa31.78■■■□□ 2.68
CSPG4P13-201ENST00000565545 TOP2BQ02880 1626 aa31.77■■■□□ 2.68
CSPG4P13-201ENST00000565545 BIVM-ERCC5R4GMW8 1640 aa31.77■■■□□ 2.68
CSPG4P13-201ENST00000565545 CHMP7Q8WUX9 453 aaPredicted RBP31.75■■■□□ 2.67
CSPG4P13-201ENST00000565545 ARAP1Q96P48 1450 aa31.75■■■□□ 2.67
CSPG4P13-201ENST00000565545 FGD5Q6ZNL6 1462 aa31.73■■■□□ 2.67
CSPG4P13-201ENST00000565545 CUX1P39880 1505 aa31.7■■■□□ 2.67
CSPG4P13-201ENST00000565545 SNAPC4Q5SXM2 1469 aa31.7■■■□□ 2.66
CSPG4P13-201ENST00000565545 GRIN2BQ13224 1484 aa31.59■■■□□ 2.65
CSPG4P13-201ENST00000565545 WDR97A6NE52 1622 aa31.59■■■□□ 2.65
CSPG4P13-201ENST00000565545 MAGI1Q96QZ7 1491 aaPredicted RBP31.59■■■□□ 2.65
CSPG4P13-201ENST00000565545 CLASP1Q7Z460 1538 aa31.52■■■□□ 2.64
CSPG4P13-201ENST00000565545 SYNJ2O15056 1496 aa31.51■■■□□ 2.63
CSPG4P13-201ENST00000565545 GAPVD1Q14C86 1478 aa31.46■■■□□ 2.63
CSPG4P13-201ENST00000565545 EEA1Q15075 1411 aa31.42■■■□□ 2.62
CSPG4P13-201ENST00000565545 ABCA10Q8WWZ4 1543 aa31.33■■■□□ 2.61
CSPG4P13-201ENST00000565545 PBRM1Q86U86 1689 aa31.29■■■□□ 2.6
CSPG4P13-201ENST00000565545 FAM9AQ8IZU1 332 aaPredicted RBP31.27■■■□□ 2.6
CSPG4P13-201ENST00000565545 ABCA5Q8WWZ7 1642 aa31.23■■■□□ 2.59
CSPG4P13-201ENST00000565545 RUSC2Q8N2Y8 1516 aa31.22■■■□□ 2.59
CSPG4P13-201ENST00000565545 KIF27Q86VH2 1401 aa31.22■■■□□ 2.59
CSPG4P13-201ENST00000565545 CSRNP3Q8WYN3 585 aa31.17■■■□□ 2.58
CSPG4P13-201ENST00000565545 GRIN2AQ12879 1464 aa31.16■■■□□ 2.58
CSPG4P13-201ENST00000565545 AEBP2Q6ZN18 517 aaPredicted RBP31.11■■■□□ 2.57
CSPG4P13-201ENST00000565545 FHAD1B1AJZ9 1412 aa31.05■■■□□ 2.56
CSPG4P13-201ENST00000565545 NUP160Q12769 1436 aa31.05■■■□□ 2.56
CSPG4P13-201ENST00000565545 ERCC6L2Q5T890 1561 aa31.05■■■□□ 2.56
CSPG4P13-201ENST00000565545 ADAMTS12P58397 1594 aa31.04■■■□□ 2.56
Retrieved 100 of 20,778 RNA–protein pairs in 93.7 ms