RNA–Protein interactions for RNA: ENST00000565452.1

VPS9D1-205, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 178 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-205ENST00000565452 NISCHQ9Y2I1 1504 aa23.13■■□□□ 1.29
VPS9D1-205ENST00000565452 ABCC9O60706 1549 aa21.67■■□□□ 1.06
VPS9D1-205ENST00000565452 DNAJC5BQ9UF47 199 aa21.02■□□□□ 0.96
VPS9D1-205ENST00000565452 CCDC180Q9P1Z9 1646 aa20.86■□□□□ 0.93
VPS9D1-205ENST00000565452 RB1CC1Q8TDY2 1594 aa20.3■□□□□ 0.84
VPS9D1-205ENST00000565452 PABPN1Q86U42 306 aaKnown RBP eCLIP20.22■□□□□ 0.83
VPS9D1-205ENST00000565452 DCAF8L2P0C7V8 631 aa20.08■□□□□ 0.81
VPS9D1-205ENST00000565452 NACADO15069 1562 aa20.03■□□□□ 0.8
VPS9D1-205ENST00000565452 DNAJC5Q9H3Z4 198 aa19.84■□□□□ 0.77
VPS9D1-205ENST00000565452 BICRAQ9NZM4 1560 aa19.66■□□□□ 0.74
VPS9D1-205ENST00000565452 CECR2Q9BXF3 1484 aa19.62■□□□□ 0.73
VPS9D1-205ENST00000565452 UNC13AQ9UPW8 1703 aa19.59■□□□□ 0.73
VPS9D1-205ENST00000565452 MYO15BQ96JP2 1530 aa19.55■□□□□ 0.72
VPS9D1-205ENST00000565452 CC2D2AQ9P2K1 1620 aa19.46■□□□□ 0.71
VPS9D1-205ENST00000565452 SHROOM4Q9ULL8 1493 aa19.41■□□□□ 0.7
VPS9D1-205ENST00000565452 EIF4G1Q04637 1599 aaKnown RBP19.27■□□□□ 0.67
VPS9D1-205ENST00000565452 SCRIBQ14160 1630 aa19.05■□□□□ 0.64
VPS9D1-205ENST00000565452 DCAF1Q9Y4B6 1507 aa19.05■□□□□ 0.64
VPS9D1-205ENST00000565452 ZCCHC6Q5VYS8 1495 aaKnown RBP18.96■□□□□ 0.63
VPS9D1-205ENST00000565452 CUX2O14529 1486 aa18.95■□□□□ 0.62
VPS9D1-205ENST00000565452 ERCC6Q03468 1493 aa18.8■□□□□ 0.6
VPS9D1-205ENST00000565452 TRIM41Q8WV44 630 aa18.7■□□□□ 0.58
VPS9D1-205ENST00000565452 NCAPD3P42695 1498 aa18.58■□□□□ 0.56
VPS9D1-205ENST00000565452 NESP48681 1621 aa18.4■□□□□ 0.54
VPS9D1-205ENST00000565452 ATAD2BQ9ULI0 1458 aa18.39■□□□□ 0.53
VPS9D1-205ENST00000565452 SMARCA2P51531 1590 aa18.27■□□□□ 0.52
VPS9D1-205ENST00000565452 HMGXB3Q12766 1538 aa18.24■□□□□ 0.51
VPS9D1-205ENST00000565452 PDS5BQ9NTI5 1447 aa18.23■□□□□ 0.51
VPS9D1-205ENST00000565452 THOC2Q8NI27 1593 aaKnown RBP18.21■□□□□ 0.51
VPS9D1-205ENST00000565452 OSCARQ8IYS5 282 aa18.19■□□□□ 0.5
VPS9D1-205ENST00000565452 BAZ1BQ9UIG0 1483 aaKnown RBP18.16■□□□□ 0.5
VPS9D1-205ENST00000565452 LAMC3Q9Y6N6 1575 aa18.15■□□□□ 0.5
VPS9D1-205ENST00000565452 SMARCA4P51532 1647 aa18.08■□□□□ 0.48
VPS9D1-205ENST00000565452 CADPSQ9ULU8 1353 aa18.03■□□□□ 0.48
VPS9D1-205ENST00000565452 MRC2Q9UBG0 1479 aa18■□□□□ 0.47
VPS9D1-205ENST00000565452 KIF21AQ7Z4S6 1674 aa17.98■□□□□ 0.47
VPS9D1-205ENST00000565452 BAZ1AQ9NRL2 1556 aaPredicted RBP17.97■□□□□ 0.47
VPS9D1-205ENST00000565452 PEG3Q9GZU2 1588 aa17.93■□□□□ 0.46
VPS9D1-205ENST00000565452 WDR62O43379 1518 aa17.9■□□□□ 0.46
VPS9D1-205ENST00000565452 TRHP20396 242 aaPredicted RBP17.83■□□□□ 0.44
VPS9D1-205ENST00000565452 AEBP2Q6ZN18 517 aaPredicted RBP17.81■□□□□ 0.44
VPS9D1-205ENST00000565452 CEP164Q9UPV0 1460 aa17.8■□□□□ 0.44
VPS9D1-205ENST00000565452 MROH2BQ7Z745 1585 aa17.79■□□□□ 0.44
VPS9D1-205ENST00000565452 CYB5RLQ6IPT4 315 aa17.78■□□□□ 0.44
VPS9D1-205ENST00000565452 FANCD2Q9BXW9 1451 aa17.74■□□□□ 0.43
VPS9D1-205ENST00000565452 RIMBP3CA6NJZ7 1639 aa17.71■□□□□ 0.43
VPS9D1-205ENST00000565452 RIMBP3BA6NNM3 1639 aa17.71■□□□□ 0.43
VPS9D1-205ENST00000565452 RIMBP3Q9UFD9 1639 aa17.71■□□□□ 0.43
VPS9D1-205ENST00000565452 ARHGEF11O15085 1522 aa17.65■□□□□ 0.42
VPS9D1-205ENST00000565452 CFTRP13569 1480 aa17.61■□□□□ 0.41
VPS9D1-205ENST00000565452 URB2Q14146 1524 aaKnown RBP17.57■□□□□ 0.4
VPS9D1-205ENST00000565452 IFT140Q96RY7 1462 aa17.5■□□□□ 0.39
VPS9D1-205ENST00000565452 ZNF608Q9ULD9 1512 aaPredicted RBP17.48■□□□□ 0.39
VPS9D1-205ENST00000565452 FBLN2P98095 1184 aa17.48■□□□□ 0.39
VPS9D1-205ENST00000565452 WIZO95785 1651 aa17.47■□□□□ 0.39
VPS9D1-205ENST00000565452 ARAP1Q96P48 1450 aa17.44■□□□□ 0.38
VPS9D1-205ENST00000565452 RSF1Q96T23 1441 aaPredicted RBP17.39■□□□□ 0.38
VPS9D1-205ENST00000565452 AQRO60306 1485 aaKnown RBP eCLIP17.32■□□□□ 0.36
VPS9D1-205ENST00000565452 ABCC8Q09428 1581 aa17.31■□□□□ 0.36
VPS9D1-205ENST00000565452 TOPBP1Q92547 1522 aa17.29■□□□□ 0.36
VPS9D1-205ENST00000565452 CHMP7Q8WUX9 453 aaPredicted RBP17.25■□□□□ 0.35
VPS9D1-205ENST00000565452 TOP2AP11388 1531 aaKnown RBP17.24■□□□□ 0.35
VPS9D1-205ENST00000565452 EIF4G3O43432 1585 aaKnown RBP17.23■□□□□ 0.35
VPS9D1-205ENST00000565452 CHD1O14646 1710 aa17.18■□□□□ 0.34
VPS9D1-205ENST00000565452 TDRD9Q8NDG6 1382 aaKnown RBP17.16■□□□□ 0.34
VPS9D1-205ENST00000565452 CCDC88BA6NC98 1476 aa17.15■□□□□ 0.34
VPS9D1-205ENST00000565452 DNMBPQ6XZF7 1577 aa17.13■□□□□ 0.33
VPS9D1-205ENST00000565452 SOGA1O94964 1423 aa17.12■□□□□ 0.33
VPS9D1-205ENST00000565452 TARBP1Q13395 1621 aaKnown RBP17.1■□□□□ 0.33
VPS9D1-205ENST00000565452 PRDM2Q13029 1718 aa17.08■□□□□ 0.32
VPS9D1-205ENST00000565452 POLA1P09884 1462 aaPredicted RBP17.07■□□□□ 0.32
VPS9D1-205ENST00000565452 CLASP1Q7Z460 1538 aa17.06■□□□□ 0.32
VPS9D1-205ENST00000565452 RAD54L2Q9Y4B4 1467 aa17.06■□□□□ 0.32
VPS9D1-205ENST00000565452 GAPVD1Q14C86 1478 aa17.05■□□□□ 0.32
VPS9D1-205ENST00000565452 SNAPC4Q5SXM2 1469 aa17.05■□□□□ 0.32
VPS9D1-205ENST00000565452 SYNJ1O43426 1573 aa17.05■□□□□ 0.32
VPS9D1-205ENST00000565452 ILDR1Q86SU0 546 aaPredicted RBP17.04■□□□□ 0.32
VPS9D1-205ENST00000565452 MAGI1Q96QZ7 1491 aaPredicted RBP17■□□□□ 0.31
VPS9D1-205ENST00000565452 SYNJ2O15056 1496 aa16.98■□□□□ 0.31
VPS9D1-205ENST00000565452 GRIN2BQ13224 1484 aa16.98■□□□□ 0.31
VPS9D1-205ENST00000565452 WDR97A6NE52 1622 aa16.91■□□□□ 0.3
VPS9D1-205ENST00000565452 FGD5Q6ZNL6 1462 aa16.87■□□□□ 0.29
VPS9D1-205ENST00000565452 KDM4FA0A1W2PPD8 638 aa16.87■□□□□ 0.29
VPS9D1-205ENST00000565452 FAM69CQ0P6D2 419 aa16.85■□□□□ 0.29
VPS9D1-205ENST00000565452 NPM1P06748 294 aaKnown RBP eCLIP16.83■□□□□ 0.28
VPS9D1-205ENST00000565452 ERCC6L2Q5T890 1561 aa16.75■□□□□ 0.27
VPS9D1-205ENST00000565452 CUX1P39880 1505 aa16.73■□□□□ 0.27
VPS9D1-205ENST00000565452 GRIN2AQ12879 1464 aa16.71■□□□□ 0.27
VPS9D1-205ENST00000565452 JPH4Q96JJ6 628 aa16.7■□□□□ 0.26
VPS9D1-205ENST00000565452 CEP170Q5SW79 1584 aa16.69■□□□□ 0.26
VPS9D1-205ENST00000565452 NUP160Q12769 1436 aa16.69■□□□□ 0.26
VPS9D1-205ENST00000565452 ABCC10Q5T3U5 1492 aa16.68■□□□□ 0.26
VPS9D1-205ENST00000565452 ABCA10Q8WWZ4 1543 aa16.66■□□□□ 0.26
VPS9D1-205ENST00000565452 PRG4Q92954 1404 aaPredicted RBP16.65■□□□□ 0.26
VPS9D1-205ENST00000565452 KIF13AQ9H1H9 1805 aa16.63■□□□□ 0.25
VPS9D1-205ENST00000565452 PBRM1Q86U86 1689 aa16.62■□□□□ 0.25
VPS9D1-205ENST00000565452 FHAD1B1AJZ9 1412 aa16.61■□□□□ 0.25
VPS9D1-205ENST00000565452 SHROOM2Q13796 1616 aa16.57■□□□□ 0.24
VPS9D1-205ENST00000565452 WRNQ14191 1432 aaPredicted RBP eCLIP16.57■□□□□ 0.24
VPS9D1-205ENST00000565452 ABCA5Q8WWZ7 1642 aa16.56■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms