RNA–Protein interactions for RNA: ENST00000565393.2

TCF4-228, Transcript of transcription factor 4, humanhuman

TSL 1 (best)

Gene TCF4, Length 314 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCF4-228ENST00000565393 NISCHQ9Y2I1 1504 aa15.63■□□□□ 0.09
TCF4-228ENST00000565393 ABCC9O60706 1549 aa14□□□□□ -0.17
TCF4-228ENST00000565393 CCDC180Q9P1Z9 1646 aa13.85□□□□□ -0.19
TCF4-228ENST00000565393 DCAF8L2P0C7V8 631 aa13.48□□□□□ -0.25
TCF4-228ENST00000565393 RB1CC1Q8TDY2 1594 aa13.27□□□□□ -0.29
TCF4-228ENST00000565393 NACADO15069 1562 aa13.19□□□□□ -0.3
TCF4-228ENST00000565393 PABPN1Q86U42 306 aaKnown RBP eCLIP13.17□□□□□ -0.3
TCF4-228ENST00000565393 DNAJC5BQ9UF47 199 aa13.15□□□□□ -0.3
TCF4-228ENST00000565393 MYO15BQ96JP2 1530 aa12.98□□□□□ -0.33
TCF4-228ENST00000565393 ZCCHC6Q5VYS8 1495 aaKnown RBP12.91□□□□□ -0.34
TCF4-228ENST00000565393 DCAF1Q9Y4B6 1507 aa12.85□□□□□ -0.35
TCF4-228ENST00000565393 BICRAQ9NZM4 1560 aa12.83□□□□□ -0.36
TCF4-228ENST00000565393 UNC13AQ9UPW8 1703 aa12.79□□□□□ -0.36
TCF4-228ENST00000565393 SCRIBQ14160 1630 aa12.74□□□□□ -0.37
TCF4-228ENST00000565393 SHROOM4Q9ULL8 1493 aa12.65□□□□□ -0.38
TCF4-228ENST00000565393 CECR2Q9BXF3 1484 aa12.59□□□□□ -0.39
TCF4-228ENST00000565393 CC2D2AQ9P2K1 1620 aa12.56□□□□□ -0.4
TCF4-228ENST00000565393 EIF4G1Q04637 1599 aaKnown RBP12.54□□□□□ -0.4
TCF4-228ENST00000565393 NCAPD3P42695 1498 aa12.23□□□□□ -0.45
TCF4-228ENST00000565393 ATAD2BQ9ULI0 1458 aa12.2□□□□□ -0.46
TCF4-228ENST00000565393 SMARCA2P51531 1590 aa12.13□□□□□ -0.47
TCF4-228ENST00000565393 SMARCA4P51532 1647 aa12.12□□□□□ -0.47
TCF4-228ENST00000565393 BAZ1AQ9NRL2 1556 aaPredicted RBP12.11□□□□□ -0.47
TCF4-228ENST00000565393 ERCC6Q03468 1493 aa12.1□□□□□ -0.47
TCF4-228ENST00000565393 BAZ1BQ9UIG0 1483 aaKnown RBP12.08□□□□□ -0.47
TCF4-228ENST00000565393 MROH2BQ7Z745 1585 aa12.06□□□□□ -0.48
TCF4-228ENST00000565393 HMGXB3Q12766 1538 aa12.05□□□□□ -0.48
TCF4-228ENST00000565393 DNAJC5Q9H3Z4 198 aa12.03□□□□□ -0.48
TCF4-228ENST00000565393 NESP48681 1621 aa12.02□□□□□ -0.49
TCF4-228ENST00000565393 CUX2O14529 1486 aa11.97□□□□□ -0.49
TCF4-228ENST00000565393 PEG3Q9GZU2 1588 aa11.96□□□□□ -0.49
TCF4-228ENST00000565393 PDS5BQ9NTI5 1447 aa11.92□□□□□ -0.5
TCF4-228ENST00000565393 CADPSQ9ULU8 1353 aa11.91□□□□□ -0.5
TCF4-228ENST00000565393 LAMC3Q9Y6N6 1575 aa11.88□□□□□ -0.51
TCF4-228ENST00000565393 WIZO95785 1651 aa11.87□□□□□ -0.51
TCF4-228ENST00000565393 RSF1Q96T23 1441 aaPredicted RBP11.87□□□□□ -0.51
TCF4-228ENST00000565393 MRC2Q9UBG0 1479 aa11.75□□□□□ -0.53
TCF4-228ENST00000565393 THOC2Q8NI27 1593 aaKnown RBP11.75□□□□□ -0.53
TCF4-228ENST00000565393 FANCD2Q9BXW9 1451 aa11.74□□□□□ -0.53
TCF4-228ENST00000565393 CFTRP13569 1480 aa11.73□□□□□ -0.53
TCF4-228ENST00000565393 KIF21AQ7Z4S6 1674 aa11.73□□□□□ -0.53
TCF4-228ENST00000565393 TOP2AP11388 1531 aaKnown RBP11.72□□□□□ -0.53
TCF4-228ENST00000565393 CEP164Q9UPV0 1460 aa11.72□□□□□ -0.53
TCF4-228ENST00000565393 CCDC88BA6NC98 1476 aa11.68□□□□□ -0.54
TCF4-228ENST00000565393 WDR62O43379 1518 aa11.65□□□□□ -0.54
TCF4-228ENST00000565393 OSCARQ8IYS5 282 aa11.62□□□□□ -0.55
TCF4-228ENST00000565393 TRIM41Q8WV44 630 aa11.61□□□□□ -0.55
TCF4-228ENST00000565393 URB2Q14146 1524 aaKnown RBP11.6□□□□□ -0.55
TCF4-228ENST00000565393 SUPT5HO00267 1087 aaKnown RBP11.59□□□□□ -0.55
TCF4-228ENST00000565393 IFT140Q96RY7 1462 aa11.5□□□□□ -0.57
TCF4-228ENST00000565393 TOPBP1Q92547 1522 aa11.5□□□□□ -0.57
TCF4-228ENST00000565393 ABCC8Q09428 1581 aa11.5□□□□□ -0.57
TCF4-228ENST00000565393 FBLN2P98095 1184 aa11.49□□□□□ -0.57
TCF4-228ENST00000565393 ZNF608Q9ULD9 1512 aaPredicted RBP11.48□□□□□ -0.57
TCF4-228ENST00000565393 AQRO60306 1485 aaKnown RBP eCLIP11.44□□□□□ -0.58
TCF4-228ENST00000565393 SOGA1O94964 1423 aa11.43□□□□□ -0.58
TCF4-228ENST00000565393 TDRD9Q8NDG6 1382 aaKnown RBP11.41□□□□□ -0.58
TCF4-228ENST00000565393 DNMBPQ6XZF7 1577 aa11.41□□□□□ -0.58
TCF4-228ENST00000565393 RAD54L2Q9Y4B4 1467 aa11.39□□□□□ -0.59
TCF4-228ENST00000565393 POLA1P09884 1462 aaPredicted RBP11.38□□□□□ -0.59
TCF4-228ENST00000565393 PRDM2Q13029 1718 aa11.38□□□□□ -0.59
TCF4-228ENST00000565393 CHMP7Q8WUX9 453 aaPredicted RBP11.38□□□□□ -0.59
TCF4-228ENST00000565393 CYB5RLQ6IPT4 315 aa11.37□□□□□ -0.59
TCF4-228ENST00000565393 FGD5Q6ZNL6 1462 aa11.33□□□□□ -0.6
TCF4-228ENST00000565393 TARBP1Q13395 1621 aaKnown RBP11.32□□□□□ -0.6
TCF4-228ENST00000565393 EIF4G3O43432 1585 aaKnown RBP11.31□□□□□ -0.6
TCF4-228ENST00000565393 CUX1P39880 1505 aa11.3□□□□□ -0.6
TCF4-228ENST00000565393 GRIN2BQ13224 1484 aa11.26□□□□□ -0.61
TCF4-228ENST00000565393 ARHGEF11O15085 1522 aa11.26□□□□□ -0.61
TCF4-228ENST00000565393 SNAPC4Q5SXM2 1469 aa11.25□□□□□ -0.61
TCF4-228ENST00000565393 TRHP20396 242 aaPredicted RBP11.25□□□□□ -0.61
TCF4-228ENST00000565393 RIMBP3CA6NJZ7 1639 aa11.24□□□□□ -0.61
TCF4-228ENST00000565393 RIMBP3BA6NNM3 1639 aa11.24□□□□□ -0.61
TCF4-228ENST00000565393 RIMBP3Q9UFD9 1639 aa11.24□□□□□ -0.61
TCF4-228ENST00000565393 WRNQ14191 1432 aaPredicted RBP eCLIP11.24□□□□□ -0.61
TCF4-228ENST00000565393 GAPVD1Q14C86 1478 aa11.24□□□□□ -0.61
TCF4-228ENST00000565393 MAGI1Q96QZ7 1491 aaPredicted RBP11.2□□□□□ -0.62
TCF4-228ENST00000565393 SYNJ2O15056 1496 aa11.19□□□□□ -0.62
TCF4-228ENST00000565393 CHD1O14646 1710 aa11.18□□□□□ -0.62
TCF4-228ENST00000565393 ABCA10Q8WWZ4 1543 aa11.18□□□□□ -0.62
TCF4-228ENST00000565393 WDR97A6NE52 1622 aa11.17□□□□□ -0.62
TCF4-228ENST00000565393 ARAP1Q96P48 1450 aa11.15□□□□□ -0.62
TCF4-228ENST00000565393 SYNJ1O43426 1573 aa11.15□□□□□ -0.62
TCF4-228ENST00000565393 TOP2BQ02880 1626 aa11.11□□□□□ -0.63
TCF4-228ENST00000565393 FHAD1B1AJZ9 1412 aa11.1□□□□□ -0.63
TCF4-228ENST00000565393 CLASP1Q7Z460 1538 aa11.1□□□□□ -0.63
TCF4-228ENST00000565393 GRIN2AQ12879 1464 aa11.08□□□□□ -0.64
TCF4-228ENST00000565393 JPH4Q96JJ6 628 aa11.08□□□□□ -0.64
TCF4-228ENST00000565393 ABCA5Q8WWZ7 1642 aa11.08□□□□□ -0.64
TCF4-228ENST00000565393 PBRM1Q86U86 1689 aa11.06□□□□□ -0.64
TCF4-228ENST00000565393 BIVM-ERCC5R4GMW8 1640 aa11.06□□□□□ -0.64
TCF4-228ENST00000565393 NUP160Q12769 1436 aa11.03□□□□□ -0.64
TCF4-228ENST00000565393 ERICH3Q5RHP9 1530 aa11.03□□□□□ -0.64
TCF4-228ENST00000565393 IGF1RP08069 1367 aa11.03□□□□□ -0.64
TCF4-228ENST00000565393 NPM1P06748 294 aaKnown RBP eCLIP11.02□□□□□ -0.65
TCF4-228ENST00000565393 KIF27Q86VH2 1401 aa11.01□□□□□ -0.65
TCF4-228ENST00000565393 PRG4Q92954 1404 aaPredicted RBP11.01□□□□□ -0.65
TCF4-228ENST00000565393 ADAMTS12P58397 1594 aa11□□□□□ -0.65
TCF4-228ENST00000565393 CEP170Q5SW79 1584 aa11□□□□□ -0.65
TCF4-228ENST00000565393 TTBK1Q5TCY1 1321 aaPredicted RBP10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms