RNA–Protein interactions for RNA: ENST00000565173.1

CAPN3-213, Transcript of calpain 3, humanhuman

TSL 4

Gene CAPN3, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-213ENST00000565173 NISCHQ9Y2I1 1504 aa21.6■■□□□ 1.05
CAPN3-213ENST00000565173 ABCC9O60706 1549 aa19.35■□□□□ 0.69
CAPN3-213ENST00000565173 CCDC180Q9P1Z9 1646 aa19.33■□□□□ 0.68
CAPN3-213ENST00000565173 RB1CC1Q8TDY2 1594 aa18.4■□□□□ 0.54
CAPN3-213ENST00000565173 NACADO15069 1562 aa18.3■□□□□ 0.52
CAPN3-213ENST00000565173 DNAJC5BQ9UF47 199 aa18.23■□□□□ 0.51
CAPN3-213ENST00000565173 DCAF8L2P0C7V8 631 aa18.21■□□□□ 0.51
CAPN3-213ENST00000565173 MYO15BQ96JP2 1530 aa18.07■□□□□ 0.48
CAPN3-213ENST00000565173 PABPN1Q86U42 306 aaKnown RBP eCLIP18.05■□□□□ 0.48
CAPN3-213ENST00000565173 UNC13AQ9UPW8 1703 aa17.99■□□□□ 0.47
CAPN3-213ENST00000565173 BICRAQ9NZM4 1560 aa17.91■□□□□ 0.46
CAPN3-213ENST00000565173 ZCCHC6Q5VYS8 1495 aaKnown RBP17.89■□□□□ 0.45
CAPN3-213ENST00000565173 DCAF1Q9Y4B6 1507 aa17.84■□□□□ 0.45
CAPN3-213ENST00000565173 SHROOM4Q9ULL8 1493 aa17.63■□□□□ 0.41
CAPN3-213ENST00000565173 SCRIBQ14160 1630 aa17.61■□□□□ 0.41
CAPN3-213ENST00000565173 CC2D2AQ9P2K1 1620 aa17.47■□□□□ 0.39
CAPN3-213ENST00000565173 EIF4G1Q04637 1599 aaKnown RBP17.45■□□□□ 0.38
CAPN3-213ENST00000565173 CECR2Q9BXF3 1484 aa17.43■□□□□ 0.38
CAPN3-213ENST00000565173 NCAPD3P42695 1498 aa16.93■□□□□ 0.3
CAPN3-213ENST00000565173 ATAD2BQ9ULI0 1458 aa16.86■□□□□ 0.29
CAPN3-213ENST00000565173 SMARCA4P51532 1647 aa16.81■□□□□ 0.28
CAPN3-213ENST00000565173 SMARCA2P51531 1590 aa16.78■□□□□ 0.28
CAPN3-213ENST00000565173 HMGXB3Q12766 1538 aa16.76■□□□□ 0.27
CAPN3-213ENST00000565173 BAZ1AQ9NRL2 1556 aaPredicted RBP16.73■□□□□ 0.27
CAPN3-213ENST00000565173 DNAJC5Q9H3Z4 198 aa16.7■□□□□ 0.26
CAPN3-213ENST00000565173 PEG3Q9GZU2 1588 aa16.68■□□□□ 0.26
CAPN3-213ENST00000565173 CUX2O14529 1486 aa16.67■□□□□ 0.26
CAPN3-213ENST00000565173 ERCC6Q03468 1493 aa16.67■□□□□ 0.26
CAPN3-213ENST00000565173 BAZ1BQ9UIG0 1483 aaKnown RBP16.67■□□□□ 0.26
CAPN3-213ENST00000565173 MROH2BQ7Z745 1585 aa16.64■□□□□ 0.25
CAPN3-213ENST00000565173 NESP48681 1621 aa16.64■□□□□ 0.25
CAPN3-213ENST00000565173 LAMC3Q9Y6N6 1575 aa16.5■□□□□ 0.23
CAPN3-213ENST00000565173 THOC2Q8NI27 1593 aaKnown RBP16.44■□□□□ 0.22
CAPN3-213ENST00000565173 WIZO95785 1651 aa16.43■□□□□ 0.22
CAPN3-213ENST00000565173 PDS5BQ9NTI5 1447 aa16.41■□□□□ 0.22
CAPN3-213ENST00000565173 CADPSQ9ULU8 1353 aa16.4■□□□□ 0.22
CAPN3-213ENST00000565173 KIF21AQ7Z4S6 1674 aa16.39■□□□□ 0.21
CAPN3-213ENST00000565173 RSF1Q96T23 1441 aaPredicted RBP16.32■□□□□ 0.2
CAPN3-213ENST00000565173 MRC2Q9UBG0 1479 aa16.26■□□□□ 0.19
CAPN3-213ENST00000565173 WDR62O43379 1518 aa16.23■□□□□ 0.19
CAPN3-213ENST00000565173 CFTRP13569 1480 aa16.22■□□□□ 0.19
CAPN3-213ENST00000565173 TOP2AP11388 1531 aaKnown RBP16.2■□□□□ 0.18
CAPN3-213ENST00000565173 FANCD2Q9BXW9 1451 aa16.2■□□□□ 0.18
CAPN3-213ENST00000565173 CEP164Q9UPV0 1460 aa16.19■□□□□ 0.18
CAPN3-213ENST00000565173 URB2Q14146 1524 aaKnown RBP16.08■□□□□ 0.16
CAPN3-213ENST00000565173 CCDC88BA6NC98 1476 aa16.06■□□□□ 0.16
CAPN3-213ENST00000565173 PRDM2Q13029 1718 aa15.98■□□□□ 0.15
CAPN3-213ENST00000565173 OSCARQ8IYS5 282 aa15.93■□□□□ 0.14
CAPN3-213ENST00000565173 TRIM41Q8WV44 630 aa15.92■□□□□ 0.14
CAPN3-213ENST00000565173 TOPBP1Q92547 1522 aa15.89■□□□□ 0.13
CAPN3-213ENST00000565173 IFT140Q96RY7 1462 aa15.88■□□□□ 0.13
CAPN3-213ENST00000565173 ZNF608Q9ULD9 1512 aaPredicted RBP15.88■□□□□ 0.13
CAPN3-213ENST00000565173 ABCC8Q09428 1581 aa15.84■□□□□ 0.13
CAPN3-213ENST00000565173 DNMBPQ6XZF7 1577 aa15.82■□□□□ 0.12
CAPN3-213ENST00000565173 TARBP1Q13395 1621 aaKnown RBP15.76■□□□□ 0.11
CAPN3-213ENST00000565173 EIF4G3O43432 1585 aaKnown RBP15.75■□□□□ 0.11
CAPN3-213ENST00000565173 AQRO60306 1485 aaKnown RBP eCLIP15.74■□□□□ 0.11
CAPN3-213ENST00000565173 POLA1P09884 1462 aaPredicted RBP15.73■□□□□ 0.11
CAPN3-213ENST00000565173 RIMBP3CA6NJZ7 1639 aa15.69■□□□□ 0.1
CAPN3-213ENST00000565173 RIMBP3BA6NNM3 1639 aa15.69■□□□□ 0.1
CAPN3-213ENST00000565173 RIMBP3Q9UFD9 1639 aa15.69■□□□□ 0.1
CAPN3-213ENST00000565173 RAD54L2Q9Y4B4 1467 aa15.69■□□□□ 0.1
CAPN3-213ENST00000565173 SOGA1O94964 1423 aa15.67■□□□□ 0.1
CAPN3-213ENST00000565173 ARHGEF11O15085 1522 aa15.65■□□□□ 0.1
CAPN3-213ENST00000565173 TDRD9Q8NDG6 1382 aaKnown RBP15.64■□□□□ 0.09
CAPN3-213ENST00000565173 CUX1P39880 1505 aa15.63■□□□□ 0.09
CAPN3-213ENST00000565173 FGD5Q6ZNL6 1462 aa15.63■□□□□ 0.09
CAPN3-213ENST00000565173 CHD1O14646 1710 aa15.62■□□□□ 0.09
CAPN3-213ENST00000565173 FBLN2P98095 1184 aa15.6■□□□□ 0.09
CAPN3-213ENST00000565173 SUPT5HO00267 1087 aaKnown RBP15.57■□□□□ 0.08
CAPN3-213ENST00000565173 CYB5RLQ6IPT4 315 aa15.56■□□□□ 0.08
CAPN3-213ENST00000565173 WDR97A6NE52 1622 aa15.56■□□□□ 0.08
CAPN3-213ENST00000565173 SNAPC4Q5SXM2 1469 aa15.54■□□□□ 0.08
CAPN3-213ENST00000565173 GRIN2BQ13224 1484 aa15.52■□□□□ 0.07
CAPN3-213ENST00000565173 ARAP1Q96P48 1450 aa15.51■□□□□ 0.07
CAPN3-213ENST00000565173 MAGI1Q96QZ7 1491 aaPredicted RBP15.51■□□□□ 0.07
CAPN3-213ENST00000565173 CHMP7Q8WUX9 453 aaPredicted RBP15.5■□□□□ 0.07
CAPN3-213ENST00000565173 CLASP1Q7Z460 1538 aa15.48■□□□□ 0.07
CAPN3-213ENST00000565173 SYNJ2O15056 1496 aa15.46■□□□□ 0.07
CAPN3-213ENST00000565173 GAPVD1Q14C86 1478 aa15.46■□□□□ 0.07
CAPN3-213ENST00000565173 ABCA10Q8WWZ4 1543 aa15.46■□□□□ 0.07
CAPN3-213ENST00000565173 SYNJ1O43426 1573 aa15.43■□□□□ 0.06
CAPN3-213ENST00000565173 PBRM1Q86U86 1689 aa15.42■□□□□ 0.06
CAPN3-213ENST00000565173 ABCA5Q8WWZ7 1642 aa15.42■□□□□ 0.06
CAPN3-213ENST00000565173 WRNQ14191 1432 aaPredicted RBP eCLIP15.4■□□□□ 0.06
CAPN3-213ENST00000565173 TOP2BQ02880 1626 aa15.36■□□□□ 0.05
CAPN3-213ENST00000565173 BIVM-ERCC5R4GMW8 1640 aa15.35■□□□□ 0.05
CAPN3-213ENST00000565173 TRHP20396 242 aaPredicted RBP15.35■□□□□ 0.05
CAPN3-213ENST00000565173 GRIN2AQ12879 1464 aa15.32■□□□□ 0.04
CAPN3-213ENST00000565173 ADAMTS12P58397 1594 aa15.29■□□□□ 0.04
CAPN3-213ENST00000565173 NUP160Q12769 1436 aa15.28■□□□□ 0.04
CAPN3-213ENST00000565173 CEP170Q5SW79 1584 aa15.27■□□□□ 0.03
CAPN3-213ENST00000565173 FHAD1B1AJZ9 1412 aa15.26■□□□□ 0.03
CAPN3-213ENST00000565173 ERCC6L2Q5T890 1561 aa15.26■□□□□ 0.03
CAPN3-213ENST00000565173 ERICH3Q5RHP9 1530 aa15.26■□□□□ 0.03
CAPN3-213ENST00000565173 SHROOM2Q13796 1616 aa15.2■□□□□ 0.02
CAPN3-213ENST00000565173 JPH4Q96JJ6 628 aa15.15■□□□□ 0.02
CAPN3-213ENST00000565173 PRG4Q92954 1404 aaPredicted RBP15.13■□□□□ 0.01
CAPN3-213ENST00000565173 IGF1RP08069 1367 aa15.11■□□□□ 0.01
CAPN3-213ENST00000565173 RUSC2Q8N2Y8 1516 aa15.07■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 79.8 ms