RNA–Protein interactions for RNA: ENST00000565142.1

ITGAM-204, Transcript of integrin subunit alpha M, humanhuman

TSL 3

Gene ITGAM, Length 516 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ITGAM-204ENST00000565142 NISCHQ9Y2I1 1504 aa40.25■■■■■ 4.03
ITGAM-204ENST00000565142 CCDC180Q9P1Z9 1646 aa36.1■■■■□ 3.37
ITGAM-204ENST00000565142 ABCC9O60706 1549 aa35.48■■■■□ 3.27
ITGAM-204ENST00000565142 RB1CC1Q8TDY2 1594 aa34.04■■■■□ 3.04
ITGAM-204ENST00000565142 NACADO15069 1562 aa33.91■■■■□ 3.02
ITGAM-204ENST00000565142 MYO15BQ96JP2 1530 aa33.63■■■□□ 2.97
ITGAM-204ENST00000565142 ZCCHC6Q5VYS8 1495 aaKnown RBP33.53■■■□□ 2.96
ITGAM-204ENST00000565142 UNC13AQ9UPW8 1703 aa33.42■■■□□ 2.94
ITGAM-204ENST00000565142 DCAF8L2P0C7V8 631 aa33.41■■■□□ 2.94
ITGAM-204ENST00000565142 DCAF1Q9Y4B6 1507 aa33.35■■■□□ 2.93
ITGAM-204ENST00000565142 BICRAQ9NZM4 1560 aa33.11■■■□□ 2.89
ITGAM-204ENST00000565142 PABPN1Q86U42 306 aaKnown RBP eCLIP32.95■■■□□ 2.87
ITGAM-204ENST00000565142 DNAJC5BQ9UF47 199 aa32.83■■■□□ 2.85
ITGAM-204ENST00000565142 SCRIBQ14160 1630 aa32.81■■■□□ 2.84
ITGAM-204ENST00000565142 SHROOM4Q9ULL8 1493 aa32.73■■■□□ 2.83
ITGAM-204ENST00000565142 EIF4G1Q04637 1599 aaKnown RBP32.22■■■□□ 2.75
ITGAM-204ENST00000565142 CC2D2AQ9P2K1 1620 aa32.17■■■□□ 2.74
ITGAM-204ENST00000565142 CECR2Q9BXF3 1484 aa31.93■■■□□ 2.7
ITGAM-204ENST00000565142 SMARCA4P51532 1647 aa31.38■■■□□ 2.61
ITGAM-204ENST00000565142 NCAPD3P42695 1498 aa31.25■■■□□ 2.59
ITGAM-204ENST00000565142 BAZ1AQ9NRL2 1556 aaPredicted RBP31.24■■■□□ 2.59
ITGAM-204ENST00000565142 ATAD2BQ9ULI0 1458 aa31.21■■■□□ 2.59
ITGAM-204ENST00000565142 SMARCA2P51531 1590 aa31.19■■■□□ 2.58
ITGAM-204ENST00000565142 HMGXB3Q12766 1538 aa31.18■■■□□ 2.58
ITGAM-204ENST00000565142 PEG3Q9GZU2 1588 aa31.12■■■□□ 2.57
ITGAM-204ENST00000565142 MROH2BQ7Z745 1585 aa31.01■■■□□ 2.56
ITGAM-204ENST00000565142 BAZ1BQ9UIG0 1483 aaKnown RBP30.94■■■□□ 2.54
ITGAM-204ENST00000565142 WIZO95785 1651 aa30.69■■■□□ 2.5
ITGAM-204ENST00000565142 NESP48681 1621 aa30.64■■■□□ 2.5
ITGAM-204ENST00000565142 ERCC6Q03468 1493 aa30.58■■■□□ 2.49
ITGAM-204ENST00000565142 LAMC3Q9Y6N6 1575 aa30.55■■■□□ 2.48
ITGAM-204ENST00000565142 CUX2O14529 1486 aa30.5■■■□□ 2.47
ITGAM-204ENST00000565142 RSF1Q96T23 1441 aaPredicted RBP30.47■■■□□ 2.47
ITGAM-204ENST00000565142 THOC2Q8NI27 1593 aaKnown RBP30.41■■■□□ 2.46
ITGAM-204ENST00000565142 KIF21AQ7Z4S6 1674 aa30.38■■■□□ 2.45
ITGAM-204ENST00000565142 TOP2AP11388 1531 aaKnown RBP30.37■■■□□ 2.45
ITGAM-204ENST00000565142 CADPSQ9ULU8 1353 aa30.26■■■□□ 2.43
ITGAM-204ENST00000565142 PDS5BQ9NTI5 1447 aa30.22■■■□□ 2.43
ITGAM-204ENST00000565142 CFTRP13569 1480 aa30.07■■■□□ 2.4
ITGAM-204ENST00000565142 MRC2Q9UBG0 1479 aa30.04■■■□□ 2.4
ITGAM-204ENST00000565142 WDR62O43379 1518 aa30.02■■■□□ 2.4
ITGAM-204ENST00000565142 PRDM2Q13029 1718 aa30.01■■■□□ 2.39
ITGAM-204ENST00000565142 CEP164Q9UPV0 1460 aa29.99■■■□□ 2.39
ITGAM-204ENST00000565142 FANCD2Q9BXW9 1451 aa29.97■■■□□ 2.39
ITGAM-204ENST00000565142 CCDC88BA6NC98 1476 aa29.9■■■□□ 2.38
ITGAM-204ENST00000565142 DNAJC5Q9H3Z4 198 aa29.83■■■□□ 2.37
ITGAM-204ENST00000565142 URB2Q14146 1524 aaKnown RBP29.75■■■□□ 2.35
ITGAM-204ENST00000565142 TOPBP1Q92547 1522 aa29.48■■■□□ 2.31
ITGAM-204ENST00000565142 DNMBPQ6XZF7 1577 aa29.46■■■□□ 2.31
ITGAM-204ENST00000565142 ABCC8Q09428 1581 aa29.39■■■□□ 2.29
ITGAM-204ENST00000565142 IFT140Q96RY7 1462 aa29.36■■■□□ 2.29
ITGAM-204ENST00000565142 ZNF608Q9ULD9 1512 aaPredicted RBP29.28■■■□□ 2.28
ITGAM-204ENST00000565142 TARBP1Q13395 1621 aaKnown RBP29.26■■■□□ 2.27
ITGAM-204ENST00000565142 EIF4G3O43432 1585 aaKnown RBP29.26■■■□□ 2.27
ITGAM-204ENST00000565142 POLA1P09884 1462 aaPredicted RBP29.21■■■□□ 2.27
ITGAM-204ENST00000565142 SUPT5HO00267 1087 aaKnown RBP29.17■■■□□ 2.26
ITGAM-204ENST00000565142 CUX1P39880 1505 aa29.14■■■□□ 2.25
ITGAM-204ENST00000565142 FGD5Q6ZNL6 1462 aa29.08■■■□□ 2.25
ITGAM-204ENST00000565142 WDR97A6NE52 1622 aa29.03■■■□□ 2.24
ITGAM-204ENST00000565142 RAD54L2Q9Y4B4 1467 aa29.03■■■□□ 2.24
ITGAM-204ENST00000565142 AQRO60306 1485 aaKnown RBP eCLIP28.98■■■□□ 2.23
ITGAM-204ENST00000565142 CHD1O14646 1710 aa28.97■■■□□ 2.23
ITGAM-204ENST00000565142 SOGA1O94964 1423 aa28.95■■■□□ 2.23
ITGAM-204ENST00000565142 OSCARQ8IYS5 282 aa28.93■■■□□ 2.22
ITGAM-204ENST00000565142 BIVM-ERCC5R4GMW8 1640 aa28.87■■■□□ 2.21
ITGAM-204ENST00000565142 TDRD9Q8NDG6 1382 aaKnown RBP28.83■■■□□ 2.21
ITGAM-204ENST00000565142 PBRM1Q86U86 1689 aa28.81■■■□□ 2.2
ITGAM-204ENST00000565142 TOP2BQ02880 1626 aa28.81■■■□□ 2.2
ITGAM-204ENST00000565142 ABCA5Q8WWZ7 1642 aa28.8■■■□□ 2.2
ITGAM-204ENST00000565142 SYNJ1O43426 1573 aa28.8■■■□□ 2.2
ITGAM-204ENST00000565142 SNAPC4Q5SXM2 1469 aa28.79■■■□□ 2.2
ITGAM-204ENST00000565142 ABCA10Q8WWZ4 1543 aa28.79■■■□□ 2.2
ITGAM-204ENST00000565142 RIMBP3CA6NJZ7 1639 aa28.78■■■□□ 2.2
ITGAM-204ENST00000565142 RIMBP3BA6NNM3 1639 aa28.78■■■□□ 2.2
ITGAM-204ENST00000565142 RIMBP3Q9UFD9 1639 aa28.78■■■□□ 2.2
ITGAM-204ENST00000565142 MAGI1Q96QZ7 1491 aaPredicted RBP28.75■■■□□ 2.19
ITGAM-204ENST00000565142 GRIN2BQ13224 1484 aa28.74■■■□□ 2.19
ITGAM-204ENST00000565142 WRNQ14191 1432 aaPredicted RBP eCLIP28.73■■■□□ 2.19
ITGAM-204ENST00000565142 ARHGEF11O15085 1522 aa28.7■■■□□ 2.19
ITGAM-204ENST00000565142 GAPVD1Q14C86 1478 aa28.67■■■□□ 2.18
ITGAM-204ENST00000565142 CLASP1Q7Z460 1538 aa28.64■■■□□ 2.17
ITGAM-204ENST00000565142 SYNJ2O15056 1496 aa28.62■■■□□ 2.17
ITGAM-204ENST00000565142 TRIM41Q8WV44 630 aa28.61■■■□□ 2.17
ITGAM-204ENST00000565142 ADAMTS12P58397 1594 aa28.55■■■□□ 2.16
ITGAM-204ENST00000565142 FBLN2P98095 1184 aa28.53■■■□□ 2.16
ITGAM-204ENST00000565142 ARAP1Q96P48 1450 aa28.46■■■□□ 2.15
ITGAM-204ENST00000565142 ERICH3Q5RHP9 1530 aa28.44■■■□□ 2.14
ITGAM-204ENST00000565142 CHMP7Q8WUX9 453 aaPredicted RBP28.43■■■□□ 2.14
ITGAM-204ENST00000565142 GRIN2AQ12879 1464 aa28.41■■■□□ 2.14
ITGAM-204ENST00000565142 CEP170Q5SW79 1584 aa28.35■■■□□ 2.13
ITGAM-204ENST00000565142 FHAD1B1AJZ9 1412 aa28.33■■■□□ 2.13
ITGAM-204ENST00000565142 NUP160Q12769 1436 aa28.32■■■□□ 2.12
ITGAM-204ENST00000565142 SHROOM2Q13796 1616 aa28.24■■■□□ 2.11
ITGAM-204ENST00000565142 CYB5RLQ6IPT4 315 aa28.2■■■□□ 2.1
ITGAM-204ENST00000565142 CUL7Q14999 1698 aa28.16■■■□□ 2.1
ITGAM-204ENST00000565142 ERCC6L2Q5T890 1561 aa28.16■■■□□ 2.1
ITGAM-204ENST00000565142 RUSC2Q8N2Y8 1516 aa28.16■■■□□ 2.1
ITGAM-204ENST00000565142 KIF27Q86VH2 1401 aa28.12■■■□□ 2.09
ITGAM-204ENST00000565142 IGF1RP08069 1367 aa28.02■■■□□ 2.08
ITGAM-204ENST00000565142 PRG4Q92954 1404 aaPredicted RBP27.9■■■□□ 2.06
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms