RNA–Protein interactions for RNA: ENST00000565121.1

NEIL1-209, Transcript of nei like DNA glycosylase 1, humanhuman

TSL 2

Gene NEIL1, Length 1,169 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEIL1-209ENST00000565121 NISCHQ9Y2I1 1504 aa33.29■■■□□ 2.92
NEIL1-209ENST00000565121 ABCC9O60706 1549 aa30.07■■■□□ 2.4
NEIL1-209ENST00000565121 CCDC180Q9P1Z9 1646 aa29.82■■■□□ 2.36
NEIL1-209ENST00000565121 RB1CC1Q8TDY2 1594 aa28.47■■■□□ 2.15
NEIL1-209ENST00000565121 DNAJC5BQ9UF47 199 aa28.39■■■□□ 2.14
NEIL1-209ENST00000565121 DCAF8L2P0C7V8 631 aa28.29■■■□□ 2.12
NEIL1-209ENST00000565121 NACADO15069 1562 aa28.25■■■□□ 2.11
NEIL1-209ENST00000565121 PABPN1Q86U42 306 aaKnown RBP eCLIP28.06■■■□□ 2.08
NEIL1-209ENST00000565121 UNC13AQ9UPW8 1703 aa27.88■■■□□ 2.05
NEIL1-209ENST00000565121 MYO15BQ96JP2 1530 aa27.79■■■□□ 2.04
NEIL1-209ENST00000565121 BICRAQ9NZM4 1560 aa27.72■■■□□ 2.03
NEIL1-209ENST00000565121 ZCCHC6Q5VYS8 1495 aaKnown RBP27.56■■■□□ 2
NEIL1-209ENST00000565121 DCAF1Q9Y4B6 1507 aa27.42■■□□□ 1.98
NEIL1-209ENST00000565121 SCRIBQ14160 1630 aa27.28■■□□□ 1.96
NEIL1-209ENST00000565121 SHROOM4Q9ULL8 1493 aa27.18■■□□□ 1.94
NEIL1-209ENST00000565121 CC2D2AQ9P2K1 1620 aa27.11■■□□□ 1.93
NEIL1-209ENST00000565121 CECR2Q9BXF3 1484 aa27.06■■□□□ 1.92
NEIL1-209ENST00000565121 EIF4G1Q04637 1599 aaKnown RBP27.01■■□□□ 1.92
NEIL1-209ENST00000565121 NCAPD3P42695 1498 aa26.12■■□□□ 1.77
NEIL1-209ENST00000565121 ATAD2BQ9ULI0 1458 aa26.06■■□□□ 1.76
NEIL1-209ENST00000565121 DNAJC5Q9H3Z4 198 aa26.03■■□□□ 1.76
NEIL1-209ENST00000565121 SMARCA4P51532 1647 aa25.99■■□□□ 1.75
NEIL1-209ENST00000565121 ERCC6Q03468 1493 aa25.91■■□□□ 1.74
NEIL1-209ENST00000565121 SMARCA2P51531 1590 aa25.91■■□□□ 1.74
NEIL1-209ENST00000565121 HMGXB3Q12766 1538 aa25.87■■□□□ 1.73
NEIL1-209ENST00000565121 CUX2O14529 1486 aa25.85■■□□□ 1.73
NEIL1-209ENST00000565121 NESP48681 1621 aa25.82■■□□□ 1.72
NEIL1-209ENST00000565121 BAZ1AQ9NRL2 1556 aaPredicted RBP25.81■■□□□ 1.72
NEIL1-209ENST00000565121 BAZ1BQ9UIG0 1483 aaKnown RBP25.78■■□□□ 1.72
NEIL1-209ENST00000565121 MROH2BQ7Z745 1585 aa25.7■■□□□ 1.71
NEIL1-209ENST00000565121 PEG3Q9GZU2 1588 aa25.69■■□□□ 1.7
NEIL1-209ENST00000565121 LAMC3Q9Y6N6 1575 aa25.51■■□□□ 1.67
NEIL1-209ENST00000565121 THOC2Q8NI27 1593 aaKnown RBP25.49■■□□□ 1.67
NEIL1-209ENST00000565121 KIF21AQ7Z4S6 1674 aa25.42■■□□□ 1.66
NEIL1-209ENST00000565121 PDS5BQ9NTI5 1447 aa25.39■■□□□ 1.66
NEIL1-209ENST00000565121 WIZO95785 1651 aa25.39■■□□□ 1.65
NEIL1-209ENST00000565121 CADPSQ9ULU8 1353 aa25.35■■□□□ 1.65
NEIL1-209ENST00000565121 MRC2Q9UBG0 1479 aa25.19■■□□□ 1.62
NEIL1-209ENST00000565121 RSF1Q96T23 1441 aaPredicted RBP25.13■■□□□ 1.61
NEIL1-209ENST00000565121 WDR62O43379 1518 aa25.12■■□□□ 1.61
NEIL1-209ENST00000565121 CEP164Q9UPV0 1460 aa25.07■■□□□ 1.6
NEIL1-209ENST00000565121 FANCD2Q9BXW9 1451 aa25.06■■□□□ 1.6
NEIL1-209ENST00000565121 CFTRP13569 1480 aa25.02■■□□□ 1.6
NEIL1-209ENST00000565121 TOP2AP11388 1531 aaKnown RBP25■■□□□ 1.59
NEIL1-209ENST00000565121 TRIM41Q8WV44 630 aa24.93■■□□□ 1.58
NEIL1-209ENST00000565121 URB2Q14146 1524 aaKnown RBP24.88■■□□□ 1.57
NEIL1-209ENST00000565121 CCDC88BA6NC98 1476 aa24.78■■□□□ 1.56
NEIL1-209ENST00000565121 OSCARQ8IYS5 282 aa24.74■■□□□ 1.55
NEIL1-209ENST00000565121 PRDM2Q13029 1718 aa24.69■■□□□ 1.54
NEIL1-209ENST00000565121 ZNF608Q9ULD9 1512 aaPredicted RBP24.61■■□□□ 1.53
NEIL1-209ENST00000565121 TOPBP1Q92547 1522 aa24.58■■□□□ 1.53
NEIL1-209ENST00000565121 IFT140Q96RY7 1462 aa24.57■■□□□ 1.52
NEIL1-209ENST00000565121 ABCC8Q09428 1581 aa24.45■■□□□ 1.5
NEIL1-209ENST00000565121 DNMBPQ6XZF7 1577 aa24.44■■□□□ 1.5
NEIL1-209ENST00000565121 RIMBP3CA6NJZ7 1639 aa24.4■■□□□ 1.5
NEIL1-209ENST00000565121 RIMBP3BA6NNM3 1639 aa24.4■■□□□ 1.5
NEIL1-209ENST00000565121 RIMBP3Q9UFD9 1639 aa24.4■■□□□ 1.5
NEIL1-209ENST00000565121 EIF4G3O43432 1585 aaKnown RBP24.4■■□□□ 1.5
NEIL1-209ENST00000565121 AQRO60306 1485 aaKnown RBP eCLIP24.39■■□□□ 1.5
NEIL1-209ENST00000565121 TARBP1Q13395 1621 aaKnown RBP24.35■■□□□ 1.49
NEIL1-209ENST00000565121 POLA1P09884 1462 aaPredicted RBP24.32■■□□□ 1.48
NEIL1-209ENST00000565121 ARHGEF11O15085 1522 aa24.3■■□□□ 1.48
NEIL1-209ENST00000565121 RAD54L2Q9Y4B4 1467 aa24.3■■□□□ 1.48
NEIL1-209ENST00000565121 FBLN2P98095 1184 aa24.27■■□□□ 1.48
NEIL1-209ENST00000565121 CHD1O14646 1710 aa24.25■■□□□ 1.47
NEIL1-209ENST00000565121 TDRD9Q8NDG6 1382 aaKnown RBP24.24■■□□□ 1.47
NEIL1-209ENST00000565121 SOGA1O94964 1423 aa24.23■■□□□ 1.47
NEIL1-209ENST00000565121 CYB5RLQ6IPT4 315 aa24.22■■□□□ 1.47
NEIL1-209ENST00000565121 FGD5Q6ZNL6 1462 aa24.17■■□□□ 1.46
NEIL1-209ENST00000565121 CUX1P39880 1505 aa24.14■■□□□ 1.45
NEIL1-209ENST00000565121 SNAPC4Q5SXM2 1469 aa24.1■■□□□ 1.45
NEIL1-209ENST00000565121 ARAP1Q96P48 1450 aa24.09■■□□□ 1.45
NEIL1-209ENST00000565121 SUPT5HO00267 1087 aaKnown RBP24.05■■□□□ 1.44
NEIL1-209ENST00000565121 CHMP7Q8WUX9 453 aaPredicted RBP24.04■■□□□ 1.44
NEIL1-209ENST00000565121 GRIN2BQ13224 1484 aa23.99■■□□□ 1.43
NEIL1-209ENST00000565121 WDR97A6NE52 1622 aa23.99■■□□□ 1.43
NEIL1-209ENST00000565121 TRHP20396 242 aaPredicted RBP23.97■■□□□ 1.43
NEIL1-209ENST00000565121 MAGI1Q96QZ7 1491 aaPredicted RBP23.97■■□□□ 1.43
NEIL1-209ENST00000565121 CLASP1Q7Z460 1538 aa23.96■■□□□ 1.43
NEIL1-209ENST00000565121 GAPVD1Q14C86 1478 aa23.92■■□□□ 1.42
NEIL1-209ENST00000565121 SYNJ2O15056 1496 aa23.91■■□□□ 1.42
NEIL1-209ENST00000565121 SYNJ1O43426 1573 aa23.91■■□□□ 1.42
NEIL1-209ENST00000565121 PBRM1Q86U86 1689 aa23.87■■□□□ 1.41
NEIL1-209ENST00000565121 ABCA10Q8WWZ4 1543 aa23.85■■□□□ 1.41
NEIL1-209ENST00000565121 ABCA5Q8WWZ7 1642 aa23.81■■□□□ 1.4
NEIL1-209ENST00000565121 WRNQ14191 1432 aaPredicted RBP eCLIP23.74■■□□□ 1.39
NEIL1-209ENST00000565121 GRIN2AQ12879 1464 aa23.68■■□□□ 1.38
NEIL1-209ENST00000565121 TOP2BQ02880 1626 aa23.67■■□□□ 1.38
NEIL1-209ENST00000565121 BIVM-ERCC5R4GMW8 1640 aa23.67■■□□□ 1.38
NEIL1-209ENST00000565121 ERCC6L2Q5T890 1561 aa23.66■■□□□ 1.38
NEIL1-209ENST00000565121 ADAMTS12P58397 1594 aa23.65■■□□□ 1.38
NEIL1-209ENST00000565121 CEP170Q5SW79 1584 aa23.62■■□□□ 1.37
NEIL1-209ENST00000565121 NUP160Q12769 1436 aa23.61■■□□□ 1.37
NEIL1-209ENST00000565121 FHAD1B1AJZ9 1412 aa23.59■■□□□ 1.37
NEIL1-209ENST00000565121 ERICH3Q5RHP9 1530 aa23.53■■□□□ 1.36
NEIL1-209ENST00000565121 SHROOM2Q13796 1616 aa23.48■■□□□ 1.35
NEIL1-209ENST00000565121 JPH4Q96JJ6 628 aa23.44■■□□□ 1.34
NEIL1-209ENST00000565121 PRG4Q92954 1404 aaPredicted RBP23.42■■□□□ 1.34
NEIL1-209ENST00000565121 RUSC2Q8N2Y8 1516 aa23.3■■□□□ 1.32
NEIL1-209ENST00000565121 AEBP2Q6ZN18 517 aaPredicted RBP23.3■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 85.2 ms